Wall clock time and date at job start Mon Mar 30 2020 02:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47106 * 2 1 4 4 H 1.09000 * 109.46925 * 182.08402 * 3 2 1 5 5 C 1.50693 * 109.47341 * 62.07854 * 3 2 1 6 6 H 1.08002 * 120.00379 * 240.00519 * 5 3 2 7 7 C 1.37873 * 119.99977 * 60.00163 * 5 3 2 8 8 N 1.31517 * 119.99990 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00191 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47441 * 89.99671 * 9 7 5 11 11 H 1.48500 * 109.47134 * 209.99954 * 9 7 5 12 12 H 1.48502 * 109.46597 * 329.99865 * 9 7 5 13 13 C 1.53005 * 109.46825 * 302.07675 * 3 2 1 14 14 C 1.52580 * 109.23045 * 300.31923 * 13 3 2 15 15 C 1.53100 * 109.95883 * 169.00364 * 14 13 3 16 16 S 1.81749 * 108.84044 * 63.02439 * 15 14 13 17 17 C 1.81750 * 102.21954 * 306.73508 * 16 15 14 18 18 C 1.52577 * 109.22635 * 179.07999 * 13 3 2 19 19 H 1.08995 * 109.47538 * 306.03837 * 1 2 3 20 20 H 1.09000 * 109.46786 * 66.04240 * 1 2 3 21 21 H 1.08998 * 109.47161 * 186.03590 * 1 2 3 22 22 H 1.08998 * 109.47069 * 239.99756 * 2 1 3 23 23 H 1.09001 * 109.47027 * 119.99548 * 2 1 3 24 24 H 0.97002 * 119.99645 * 179.97438 * 8 7 5 25 25 H 1.09007 * 109.22325 * 59.68034 * 13 3 2 26 26 H 1.08994 * 109.38705 * 289.15537 * 14 13 3 27 27 H 1.08999 * 109.39100 * 48.85050 * 14 13 3 28 28 H 1.09000 * 109.57155 * 303.22082 * 15 14 13 29 29 H 1.08997 * 109.57267 * 182.83143 * 15 14 13 30 30 H 1.09003 * 109.57732 * 293.45922 * 17 16 15 31 31 H 1.08999 * 109.57867 * 173.07285 * 17 16 15 32 32 H 1.09010 * 109.39252 * 311.14972 * 18 13 3 33 33 H 1.09002 * 109.39275 * 70.94588 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 -0.0374 5 6 1.5802 2.1379 1.2553 6 1 0.9564 3.0170 1.1882 7 6 1.9559 1.6519 2.4897 8 7 2.7150 0.5811 2.5715 9 14 1.3854 2.5134 4.0459 10 1 0.0919 1.9329 4.4874 11 1 2.4006 2.3298 5.1139 12 1 1.2101 3.9627 3.7734 13 6 1.4877 2.1787 -1.2223 14 6 1.9499 1.4656 -2.4896 15 6 1.1942 2.0140 -3.7030 16 16 1.6023 3.7738 -3.9025 17 6 1.2292 4.4444 -2.2549 18 6 1.9809 3.6224 -1.2047 19 1 -0.3634 0.6046 0.8309 20 1 -0.3633 0.4173 -0.9391 21 1 -0.3633 -1.0219 0.1081 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 2.9796 0.2394 3.4399 25 1 0.3983 2.1711 -1.1840 26 1 3.0192 1.6269 -2.6261 27 1 1.7559 0.3972 -2.3950 28 1 0.1213 1.9035 -3.5454 29 1 1.4923 1.4663 -4.5969 30 1 0.1570 4.3813 -2.0692 31 1 1.5501 5.4847 -2.2028 32 1 1.8085 4.0517 -0.2176 33 1 3.0479 3.6431 -1.4267 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259745153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:39 Heat of formation + Delta-G solvation = -44.819758 kcal Electronic energy + Delta-G solvation = -13208.007591 eV Core-core repulsion = 11165.066682 eV Total energy + Delta-G solvation = -2042.940909 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.32856 -35.36841 -33.25089 -32.28527 -29.54166 -27.05640 -25.03887 -23.69477 -22.13217 -20.17382 -18.18005 -17.62617 -16.70674 -15.59690 -15.40635 -15.23511 -14.71694 -14.48685 -14.01687 -13.68436 -13.54112 -13.53697 -12.96398 -12.81583 -12.41823 -12.38127 -12.19192 -11.84666 -11.51157 -11.45485 -11.17208 -10.90486 -10.47544 -10.37077 -10.27354 -8.60131 -8.00971 -6.11012 0.95015 1.40739 1.43601 1.50914 1.66310 2.46448 3.27059 3.87423 4.04275 4.06568 4.21906 4.39975 4.51778 4.65685 4.68996 4.71233 4.83231 4.88061 4.98439 5.11632 5.14564 5.22509 5.38495 5.47561 5.51382 5.67250 5.72301 5.77814 6.05448 6.28060 6.48058 6.99539 7.54992 9.03110 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.039977 B = 0.009684 C = 0.008479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.234339 B = 2890.761547 C = 3301.516302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.115 4.115 3 C 0.056 3.944 4 H -0.013 1.013 5 C -0.504 4.504 6 H 0.055 0.945 7 C 0.013 3.987 8 N -0.919 5.919 9 Si 0.939 3.061 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.268 1.268 13 C -0.076 4.076 14 C -0.115 4.115 15 C -0.064 4.064 16 S -0.308 6.308 17 C -0.065 4.065 18 C -0.107 4.107 19 H 0.038 0.962 20 H 0.052 0.948 21 H 0.037 0.963 22 H 0.034 0.966 23 H 0.054 0.946 24 H 0.256 0.744 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.008 3.093 -9.270 10.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.153 4.153 3 C 0.037 3.963 4 H 0.005 0.995 5 C -0.542 4.542 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.559 5.559 9 Si 0.766 3.234 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.192 1.192 13 C -0.095 4.095 14 C -0.154 4.154 15 C -0.212 4.212 16 S -0.082 6.082 17 C -0.213 4.213 18 C -0.146 4.146 19 H 0.057 0.943 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.088 0.912 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.554 3.534 -10.056 11.236 hybrid contribution -0.390 -0.385 2.311 2.375 sum -3.944 3.149 -7.746 9.245 Atomic orbital electron populations 1.21549 0.96559 0.99286 1.00652 1.21470 0.95493 0.98988 0.99369 1.18605 0.93523 0.92315 0.91821 0.99514 1.21430 1.30114 1.11234 0.91445 0.92680 1.25607 0.95625 0.95691 1.01574 1.70017 1.37630 1.23870 1.24399 0.85851 0.77767 0.79429 0.80387 1.20582 1.21700 1.19250 1.21043 0.99567 0.94196 0.94652 1.21806 0.99651 1.00795 0.93154 1.23440 1.03329 0.92273 1.02137 1.86551 1.89660 1.11174 1.20865 1.23446 1.03340 1.02233 0.92261 1.21656 0.99069 0.95476 0.98397 0.94263 0.92886 0.94406 0.94783 0.92762 0.93512 0.92172 0.92380 0.90397 0.89347 0.86634 0.89623 0.87238 0.91182 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 9.19 71.98 0.66 -4.24 16 2 C -0.12 -5.20 5.12 30.59 0.16 -5.05 16 3 C 0.06 2.61 1.67 -11.54 -0.02 2.59 16 4 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 5 C -0.50 -25.90 6.40 25.60 0.16 -25.74 16 6 H 0.06 2.78 6.70 -2.91 -0.02 2.76 16 7 C 0.01 0.69 5.30 84.65 0.45 1.14 16 8 N -0.92 -52.26 11.30 21.45 0.24 -52.01 16 9 Si 0.94 42.85 29.54 68.60 2.03 44.87 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 C -0.08 -2.83 1.11 -11.07 -0.01 -2.85 16 14 C -0.12 -3.68 4.94 30.49 0.15 -3.52 16 15 C -0.06 -1.68 6.45 72.02 0.46 -1.22 16 16 S -0.31 -8.82 22.33 -56.49 -1.26 -10.08 16 17 C -0.06 -1.87 6.45 72.01 0.46 -1.40 16 18 C -0.11 -3.79 4.94 30.49 0.15 -3.64 16 19 H 0.04 1.72 7.09 -2.39 -0.02 1.70 16 20 H 0.05 1.84 6.73 -2.39 -0.02 1.82 16 21 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.03 1.39 6.28 -2.39 -0.01 1.37 16 23 H 0.05 2.86 6.02 -2.39 -0.01 2.85 16 24 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 25 H 0.06 2.24 6.43 -2.38 -0.02 2.23 16 26 H 0.06 1.95 8.06 -2.39 -0.02 1.93 16 27 H 0.08 2.46 5.89 -2.39 -0.01 2.45 16 28 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.07 2.74 6.22 -2.38 -0.01 2.72 16 33 H 0.05 1.98 8.06 -2.39 -0.02 1.96 16 Total: -1.00 -55.96 260.71 4.71 -51.26 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.07 Total: 9.90 kcal Atomic # 6 Polarization: -46.57 SS G_CDS: 2.63 Total: -43.94 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.24 Total: -52.01 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.26 Total: -10.08 kcal Total: -55.96 4.71 -51.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259745153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.437 kcal (2) G-P(sol) polarization free energy of solvation -55.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds