Wall clock time and date at job start Mon Mar 30 2020 02:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47305 * 2 1 4 4 H 1.09003 * 109.46810 * 304.32089 * 3 2 1 5 5 C 1.50697 * 109.47212 * 64.32087 * 3 2 1 6 6 H 1.07998 * 119.99973 * 65.26860 * 5 3 2 7 7 C 1.37881 * 120.00179 * 245.26819 * 5 3 2 8 8 N 1.31512 * 119.99923 * 9.82122 * 7 5 3 9 9 Si 1.86794 * 120.00246 * 189.82065 * 7 5 3 10 10 H 1.48505 * 109.47232 * 270.00080 * 9 7 5 11 11 H 1.48509 * 109.47014 * 29.99742 * 9 7 5 12 12 H 1.48495 * 109.47598 * 149.99859 * 9 7 5 13 13 C 1.53004 * 109.47062 * 184.32252 * 3 2 1 14 14 C 1.52581 * 109.22458 * 180.59359 * 13 3 2 15 15 C 1.53118 * 109.94827 * 168.96227 * 14 13 3 16 16 S 1.81744 * 108.80479 * 63.08525 * 15 14 13 17 17 C 1.81747 * 102.22503 * 306.71794 * 16 15 14 18 18 C 1.52584 * 109.22542 * 59.40442 * 13 3 2 19 19 H 1.08999 * 109.46744 * 63.71172 * 1 2 3 20 20 H 1.09003 * 109.47147 * 183.71324 * 1 2 3 21 21 H 1.08996 * 109.46938 * 303.71307 * 1 2 3 22 22 H 1.09000 * 109.46907 * 239.99686 * 2 1 3 23 23 H 1.09004 * 109.47026 * 120.00110 * 2 1 3 24 24 H 0.97004 * 119.99749 * 356.11665 * 8 7 5 25 25 H 1.08992 * 109.22369 * 299.99543 * 13 3 2 26 26 H 1.08996 * 109.39474 * 289.15479 * 14 13 3 27 27 H 1.09000 * 109.39073 * 48.85636 * 14 13 3 28 28 H 1.09002 * 109.60392 * 303.28218 * 15 14 13 29 29 H 1.08989 * 109.57552 * 182.87465 * 15 14 13 30 30 H 1.09004 * 109.57290 * 293.45719 * 17 16 15 31 31 H 1.08997 * 109.68386 * 173.13955 * 17 16 15 32 32 H 1.09003 * 109.38920 * 311.13987 * 18 13 3 33 33 H 1.08998 * 109.39047 * 70.84271 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6148 1.9781 -0.8488 5 6 1.6271 2.1213 1.2805 6 1 2.0246 1.7803 2.2250 7 6 0.7416 3.1777 1.2462 8 7 0.1099 3.4703 0.1305 9 14 0.4394 4.1933 2.7845 10 1 -0.6826 3.6010 3.5563 11 1 1.6661 4.2011 3.6215 12 1 0.0945 5.5853 2.3989 13 6 3.5662 1.4437 -0.1087 14 6 4.0698 2.8840 -0.0934 15 6 5.5915 2.9036 0.0753 16 16 6.3507 2.0897 -1.3614 17 6 5.4886 0.4901 -1.3977 18 6 3.9786 0.7423 -1.3995 19 1 -0.3633 0.4551 -0.9214 20 1 -0.3633 -1.0255 0.0666 21 1 -0.3633 0.5704 0.8548 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 0.3083 2.9793 -0.6822 25 1 3.9870 0.9073 0.7416 26 1 3.8027 3.3708 -1.0313 27 1 3.6074 3.4202 0.7354 28 1 5.8655 2.3691 0.9849 29 1 5.9388 3.9348 0.1367 30 1 5.7608 -0.0914 -0.5168 31 1 5.7686 -0.0575 -2.2975 32 1 3.4529 -0.2094 -1.4780 33 1 3.7174 1.3697 -2.2517 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259745158.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:41 Heat of formation + Delta-G solvation = -36.976775 kcal Electronic energy + Delta-G solvation = -13179.666403 eV Core-core repulsion = 11137.065591 eV Total energy + Delta-G solvation = -2042.600812 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.67193 -33.82699 -31.65385 -30.85085 -28.11226 -24.83829 -23.25332 -22.20034 -20.28353 -19.32193 -16.67813 -16.32975 -14.32585 -14.16087 -14.03736 -13.74397 -13.29574 -12.98395 -12.60287 -12.28234 -12.14122 -12.01532 -11.36283 -10.89075 -10.78226 -10.78157 -10.33491 -10.14100 -10.06186 -9.84514 -9.62224 -9.17084 -9.04233 -8.53381 -8.18639 -7.36636 -6.34132 -4.00473 2.15814 2.88474 3.40936 3.44042 3.59344 4.50506 5.15240 5.28887 5.34012 5.40964 5.54655 5.68466 5.81421 5.93542 6.02334 6.16217 6.26844 6.33525 6.43852 6.54132 6.56673 6.79747 6.85973 7.05020 7.11119 7.16268 7.33169 7.51446 7.55736 8.28474 8.45602 8.91969 9.68123 11.04573 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.031629 B = 0.010888 C = 0.008732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.058030 B = 2570.969235 C = 3205.732480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.111 4.111 3 C 0.030 3.970 4 H 0.044 0.956 5 C -0.584 4.584 6 H 0.045 0.955 7 C 0.025 3.975 8 N -0.911 5.911 9 Si 1.059 2.941 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.285 1.285 13 C -0.079 4.079 14 C -0.104 4.104 15 C -0.070 4.070 16 S -0.302 6.302 17 C -0.071 4.071 18 C -0.124 4.124 19 H 0.038 0.962 20 H 0.024 0.976 21 H 0.068 0.932 22 H 0.029 0.971 23 H 0.040 0.960 24 H 0.271 0.729 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.353 -3.886 -1.150 8.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.148 4.148 3 C 0.011 3.989 4 H 0.062 0.938 5 C -0.622 4.622 6 H 0.063 0.937 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.888 3.112 10 H -0.217 1.217 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.098 4.098 14 C -0.143 4.143 15 C -0.218 4.218 16 S -0.077 6.077 17 C -0.219 4.219 18 C -0.163 4.163 19 H 0.057 0.943 20 H 0.043 0.957 21 H 0.087 0.913 22 H 0.047 0.953 23 H 0.058 0.942 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.261 -2.236 -1.233 7.697 hybrid contribution 0.062 -1.784 0.253 1.803 sum 7.323 -4.020 -0.980 8.412 Atomic orbital electron populations 1.21577 0.96763 0.98389 1.02274 1.21694 0.95591 0.99560 0.97983 1.19030 0.89071 0.92241 0.98573 0.93821 1.21753 1.30284 1.17575 0.92595 0.93667 1.25667 0.92978 0.96353 1.02964 1.70806 1.38376 1.44399 1.01191 0.83684 0.75947 0.76657 0.74869 1.21658 1.21514 1.21070 1.21185 1.00232 0.94069 0.94362 1.21656 0.90424 0.98557 1.03669 1.23544 1.00052 1.02028 0.96184 1.86467 1.56576 1.20493 1.44179 1.23409 0.98857 0.94982 1.04654 1.21992 0.92165 1.01752 1.00369 0.94273 0.95734 0.91348 0.95284 0.94160 0.91599 0.93097 0.92133 0.88820 0.90481 0.88766 0.90526 0.88917 0.90920 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.78 37.16 0.36 -2.45 16 2 C -0.11 -2.31 5.17 -26.73 -0.14 -2.45 16 3 C 0.03 0.68 1.60 -91.77 -0.15 0.53 16 4 H 0.04 1.10 5.83 -51.93 -0.30 0.80 16 5 C -0.58 -14.93 5.71 -34.44 -0.20 -15.13 16 6 H 0.04 1.19 7.83 -52.49 -0.41 0.78 16 7 C 0.03 0.67 5.39 -17.82 -0.10 0.58 16 8 N -0.91 -25.86 13.64 55.43 0.76 -25.10 16 9 Si 1.06 24.25 29.91 -169.99 -5.09 19.16 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C -0.08 -1.56 1.52 -91.05 -0.14 -1.70 16 14 C -0.10 -2.03 4.96 -26.88 -0.13 -2.17 16 15 C -0.07 -1.16 6.46 37.22 0.24 -0.92 16 16 S -0.30 -4.92 22.33 -107.50 -2.40 -7.32 16 17 C -0.07 -1.06 6.45 37.21 0.24 -0.82 16 18 C -0.12 -2.11 4.94 -26.89 -0.13 -2.25 16 19 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 20 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 21 H 0.07 1.63 7.19 -51.93 -0.37 1.25 16 22 H 0.03 0.55 5.95 -51.93 -0.31 0.24 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.27 7.68 6.35 -40.82 -0.26 7.42 16 25 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 26 H 0.06 1.24 8.05 -51.93 -0.42 0.82 16 27 H 0.09 2.04 6.80 -51.93 -0.35 1.69 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.19 5.76 -51.93 -0.30 0.89 16 33 H 0.07 1.19 8.05 -51.93 -0.42 0.77 16 LS Contribution 266.10 15.07 4.01 4.01 Total: -1.00 -26.66 266.10 -8.18 -34.83 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.32 Total: 1.19 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: -0.14 Total: -26.78 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.76 Total: -25.10 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -5.09 Total: 19.16 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -2.40 Total: -7.32 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -26.66 -8.18 -34.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259745158.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.142 kcal (2) G-P(sol) polarization free energy of solvation -26.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds