Wall clock time and date at job start Mon Mar 30 2020 02:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.46900 * 2 1 4 4 C 1.52998 * 109.47490 * 119.99821 * 2 1 3 5 5 C 1.50713 * 109.21893 * 313.45507 * 4 2 1 6 6 H 1.07999 * 119.99916 * 111.14336 * 5 4 2 7 7 C 1.37873 * 119.99582 * 291.14003 * 5 4 2 8 8 N 1.31523 * 119.99725 * 145.98109 * 7 5 4 9 9 Si 1.86794 * 120.00418 * 325.98001 * 7 5 4 10 10 H 1.48507 * 109.47120 * 308.15964 * 9 7 5 11 11 H 1.48499 * 109.47562 * 68.16004 * 9 7 5 12 12 H 1.48506 * 109.47558 * 188.16060 * 9 7 5 13 13 C 1.52584 * 109.22384 * 72.85076 * 4 2 1 14 14 C 1.53026 * 109.99176 * 191.00726 * 13 4 2 15 15 S 1.81748 * 108.81635 * 296.93847 * 14 13 4 16 16 C 1.81753 * 102.21953 * 53.27241 * 15 14 13 17 17 C 1.52573 * 109.23068 * 194.05223 * 4 2 1 18 18 H 1.09006 * 109.47470 * 300.00103 * 1 2 3 19 19 H 1.09007 * 109.47477 * 60.00158 * 1 2 3 20 20 H 1.09001 * 109.47230 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47338 * 240.00299 * 2 1 3 22 22 H 1.08999 * 109.46814 * 209.85109 * 3 2 1 23 23 H 1.09004 * 109.46838 * 329.84690 * 3 2 1 24 24 H 1.08999 * 109.47095 * 89.85264 * 3 2 1 25 25 H 0.96998 * 119.99681 * 180.02562 * 8 7 5 26 26 H 1.08998 * 109.39191 * 311.10788 * 13 4 2 27 27 H 1.08995 * 109.38554 * 70.81299 * 13 4 2 28 28 H 1.09000 * 109.58339 * 177.14179 * 14 13 4 29 29 H 1.08998 * 109.69829 * 56.80477 * 14 13 4 30 30 H 1.08998 * 109.57652 * 186.92707 * 16 15 14 31 31 H 1.08996 * 109.68481 * 66.60034 * 16 15 14 32 32 H 1.09000 * 109.38898 * 289.19222 * 17 4 2 33 33 H 1.09006 * 109.39435 * 48.89576 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.2826 -0.2235 2.4534 6 1 0.5924 -0.8776 2.9655 7 6 1.4709 1.0668 2.9013 8 7 0.4672 1.7325 3.4296 9 14 3.1515 1.8694 2.7578 10 1 4.1787 0.9770 3.3527 11 1 3.4681 2.1029 1.3258 12 1 3.1441 3.1665 3.4809 13 6 1.8070 -2.2211 1.0938 14 6 2.0533 -2.9298 2.4275 15 16 3.7952 -2.7078 2.8963 16 6 3.9903 -0.9029 2.8080 17 6 3.5251 -0.4222 1.4309 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.8933 -0.5137 -0.8899 22 1 3.0013 1.4880 -0.5115 23 1 1.3231 2.0813 -0.5162 24 1 2.1585 1.7860 1.0277 25 1 0.5996 2.6404 3.7443 26 1 0.7792 -2.3967 0.7763 27 1 2.4892 -2.6172 0.3417 28 1 1.8361 -3.9927 2.3219 29 1 1.4107 -2.5003 3.1959 30 1 5.0388 -0.6415 2.9511 31 1 3.3870 -0.4301 3.5828 32 1 4.0950 -0.9359 0.6567 33 1 3.6909 0.6520 1.3476 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259747304.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:22 Heat of formation + Delta-G solvation = 27.724397 kcal Electronic energy + Delta-G solvation = -14025.279061 eV Core-core repulsion = 11985.483902 eV Total energy + Delta-G solvation = -2039.795159 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.29475 -34.28432 -34.03382 -32.79067 -28.29764 -28.04160 -26.49259 -23.58827 -22.21808 -20.28914 -18.40084 -18.12525 -16.34032 -15.93724 -15.75229 -15.21528 -14.62514 -14.49525 -14.16641 -13.86511 -13.56971 -13.44591 -13.24792 -12.70772 -12.24457 -12.14680 -11.91740 -11.74121 -11.55207 -11.12106 -10.96458 -10.73018 -10.48047 -10.10242 -9.77918 -8.48821 -8.26185 -6.04649 1.05766 1.32197 1.48877 1.55352 1.84942 2.40679 3.03307 3.99112 4.10874 4.16292 4.29404 4.42654 4.49097 4.51557 4.62067 4.74450 4.86128 4.94865 4.99372 5.08509 5.14755 5.19089 5.22711 5.27030 5.38157 5.44550 5.64457 5.75893 5.81300 6.03428 6.47182 6.89655 7.48654 8.85590 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.028513 B = 0.018863 C = 0.015236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.772579 B = 1484.037205 C = 1837.298603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.076 4.076 3 C -0.169 4.169 4 C 0.044 3.956 5 C -0.504 4.504 6 H 0.037 0.963 7 C 0.047 3.953 8 N -0.913 5.913 9 Si 0.854 3.146 10 H -0.228 1.228 11 H -0.205 1.205 12 H -0.340 1.340 13 C -0.093 4.093 14 C -0.056 4.056 15 S -0.309 6.309 16 C -0.059 4.059 17 C -0.142 4.142 18 H 0.042 0.958 19 H 0.041 0.959 20 H 0.047 0.953 21 H 0.062 0.938 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.059 0.941 25 H 0.257 0.743 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.365 -4.816 -6.271 9.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.094 4.094 3 C -0.225 4.225 4 C 0.043 3.957 5 C -0.541 4.541 6 H 0.055 0.945 7 C -0.152 4.152 8 N -0.550 5.550 9 Si 0.685 3.315 10 H -0.153 1.153 11 H -0.132 1.132 12 H -0.272 1.272 13 C -0.132 4.132 14 C -0.204 4.204 15 S -0.084 6.084 16 C -0.206 4.206 17 C -0.180 4.180 18 H 0.061 0.939 19 H 0.060 0.940 20 H 0.066 0.934 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.033 -5.471 -5.899 10.056 hybrid contribution -0.611 1.817 0.317 1.943 sum 5.422 -3.653 -5.583 8.597 Atomic orbital electron populations 1.21658 0.95907 1.00501 0.99994 1.21157 0.95746 0.95025 0.97517 1.22726 0.99774 0.97816 1.02165 1.18467 0.90873 0.92705 0.93692 1.20688 1.23961 0.96545 1.12880 0.94450 1.25523 0.98320 0.96798 0.94581 1.70346 1.31645 1.10670 1.42325 0.88913 0.86116 0.76346 0.80083 1.15304 1.13204 1.27233 1.21571 1.01438 0.95236 0.94921 1.23312 0.92739 1.03175 1.01167 1.86052 1.18379 1.11909 1.92047 1.23881 1.03197 0.91948 1.01595 1.22366 0.99067 1.01248 0.95279 0.93855 0.93967 0.93429 0.91932 0.92648 0.93764 0.92318 0.93366 0.91498 0.91299 0.87647 0.91009 0.88836 0.90276 0.90581 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 8.42 71.98 0.61 -4.23 16 2 C -0.08 -2.87 2.34 -10.79 -0.03 -2.90 16 3 C -0.17 -6.55 7.12 71.98 0.51 -6.04 16 4 C 0.04 1.75 0.30 -53.20 -0.02 1.74 16 5 C -0.50 -24.91 4.50 25.60 0.12 -24.79 16 6 H 0.04 2.10 6.58 -2.91 -0.02 2.08 16 7 C 0.05 2.49 4.27 84.65 0.36 2.85 16 8 N -0.91 -53.10 13.96 21.45 0.30 -52.80 16 9 Si 0.85 38.44 20.81 68.60 1.43 39.87 16 10 H -0.23 -9.40 4.07 99.48 0.40 -8.99 16 11 H -0.21 -8.27 3.94 99.48 0.39 -7.88 16 12 H -0.34 -16.86 7.11 99.48 0.71 -16.15 16 13 C -0.09 -3.29 4.59 30.47 0.14 -3.15 16 14 C -0.06 -2.00 6.14 71.99 0.44 -1.55 16 15 S -0.31 -11.27 22.33 -56.49 -1.26 -12.53 16 16 C -0.06 -2.29 4.05 72.02 0.29 -2.00 16 17 C -0.14 -5.39 3.70 30.49 0.11 -5.28 16 18 H 0.04 2.06 6.79 -2.38 -0.02 2.04 16 19 H 0.04 1.45 8.11 -2.38 -0.02 1.43 16 20 H 0.05 1.73 6.67 -2.39 -0.02 1.71 16 21 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 22 H 0.05 1.89 7.70 -2.39 -0.02 1.87 16 23 H 0.04 1.64 7.82 -2.38 -0.02 1.62 16 24 H 0.06 2.56 1.29 -2.39 0.00 2.56 16 25 H 0.26 14.56 8.31 -92.71 -0.77 13.78 16 26 H 0.07 2.32 6.52 -2.39 -0.02 2.30 16 27 H 0.07 2.18 8.06 -2.39 -0.02 2.16 16 28 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 29 H 0.07 2.95 6.11 -2.39 -0.01 2.94 16 30 H 0.09 3.32 7.70 -2.39 -0.02 3.30 16 31 H 0.08 3.53 4.57 -2.39 -0.01 3.52 16 32 H 0.08 2.58 8.06 -2.39 -0.02 2.56 16 33 H 0.07 2.67 1.86 -2.38 0.00 2.66 16 Total: -1.00 -55.55 229.99 3.49 -52.07 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.48 Total: 18.73 kcal Atomic # 6 Polarization: -47.88 SS G_CDS: 2.54 Total: -45.34 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.30 Total: -52.80 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 1.43 Total: 39.87 kcal Atomic # 16 Polarization: -11.27 SS G_CDS: -1.26 Total: -12.53 kcal Total: -55.55 3.49 -52.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259747304.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.793 kcal (2) G-P(sol) polarization free energy of solvation -55.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds