Wall clock time and date at job start Mon Mar 30 2020 02:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34636 * 117.00392 * 2 1 4 4 O 1.21513 * 119.99754 * 359.97438 * 3 2 1 5 5 N 1.34769 * 120.00475 * 179.97438 * 3 2 1 6 6 C 1.47585 * 134.49378 * 179.97438 * 5 3 2 7 7 C 1.53952 * 86.11502 * 155.35633 * 6 5 3 8 8 C 1.50695 * 113.73902 * 137.95394 * 7 6 5 9 9 H 1.08005 * 120.00123 * 246.42025 * 8 7 6 10 10 C 1.37875 * 120.00153 * 66.14889 * 8 7 6 11 11 N 1.31510 * 120.00383 * 353.70140 * 10 8 7 12 12 Si 1.86803 * 120.00123 * 173.70026 * 10 8 7 13 13 H 1.48501 * 109.47003 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47120 * 119.99743 * 12 10 8 15 15 H 1.48498 * 109.47271 * 239.99846 * 12 10 8 16 16 C 1.52997 * 113.74198 * 269.15072 * 7 6 5 17 17 N 1.46903 * 109.47255 * 173.41865 * 16 7 6 18 18 C 1.47813 * 134.45688 * 359.86023 * 5 3 2 19 19 H 1.09001 * 109.46877 * 60.00511 * 1 2 3 20 20 H 1.09000 * 109.47096 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47552 * 300.00327 * 1 2 3 22 22 H 1.08999 * 113.76897 * 41.05457 * 6 5 3 23 23 H 1.09000 * 113.87259 * 269.66697 * 6 5 3 24 24 H 0.96998 * 120.00748 * 180.02562 * 11 10 8 25 25 H 1.09003 * 109.47641 * 293.42611 * 16 7 6 26 26 H 1.09001 * 109.47063 * 53.42146 * 16 7 6 27 27 H 1.00897 * 110.99638 * 174.45857 * 17 16 7 28 28 H 1.00897 * 111.00007 * 298.41746 * 17 16 7 29 29 H 1.08998 * 113.76701 * 90.37971 * 18 5 3 30 30 H 1.09004 * 113.83751 * 318.92580 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.3869 2.3756 0.0002 7 6 5.3632 1.3729 0.6417 8 6 6.7612 1.4458 0.0839 9 1 7.1619 0.6159 -0.4793 10 6 7.5269 2.5742 0.2877 11 7 6.9976 3.6335 0.8597 12 14 9.3161 2.5984 -0.2487 13 1 9.6665 1.2924 -0.8625 14 1 9.5202 3.6825 -1.2428 15 1 10.1836 2.8397 0.9321 16 6 5.3307 1.3741 2.1714 17 7 6.1734 0.2836 2.6799 18 6 4.4982 0.2707 0.0037 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 4.1142 3.2035 0.6547 23 1 4.6839 2.7015 -0.9966 24 1 7.5361 4.4275 1.0028 25 1 5.7071 2.3275 2.5422 26 1 4.3056 1.2307 2.5131 27 1 6.2411 0.3181 3.6861 28 1 5.8295 -0.6133 2.3711 29 1 4.8268 -0.0241 -0.9928 30 1 4.3142 -0.5792 0.6610 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259773127.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:42 Heat of formation + Delta-G solvation = -40.427103 kcal Electronic energy + Delta-G solvation = -14831.441592 eV Core-core repulsion = 12242.397948 eV Total energy + Delta-G solvation = -2589.043644 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.95572 -38.34404 -35.61874 -33.40467 -32.13869 -29.29438 -27.09607 -25.27665 -24.87370 -23.70818 -20.33705 -18.54130 -17.18751 -16.56391 -16.31292 -15.76019 -14.97172 -14.47255 -14.11792 -13.79027 -13.21719 -12.93463 -12.63963 -12.33525 -11.82170 -11.72035 -11.23233 -10.88479 -10.72173 -10.43893 -10.40341 -10.37393 -10.01383 -9.16101 -9.06903 -8.44426 -7.98647 -7.56702 -6.05895 -4.06768 2.67732 3.33135 3.41521 3.42692 3.45825 4.41941 4.54060 5.25559 5.33268 5.38886 5.49420 5.60901 5.78437 6.13882 6.20007 6.20702 6.46014 6.50822 6.58755 6.84892 6.92644 7.08277 7.42400 7.90264 8.04661 8.32364 8.38351 8.49359 8.86427 8.88133 9.57374 11.03895 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.048176 B = 0.008588 C = 0.008141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.067344 B = 3259.743753 C = 3438.452963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.377 6.377 3 C 0.654 3.346 4 O -0.592 6.592 5 N -0.628 5.628 6 C 0.156 3.844 7 C 0.062 3.938 8 C -0.484 4.484 9 H 0.063 0.937 10 C 0.073 3.927 11 N -0.890 5.890 12 Si 0.897 3.103 13 H -0.274 1.274 14 H -0.289 1.289 15 H -0.285 1.285 16 C 0.097 3.903 17 N -0.826 5.826 18 C 0.106 3.894 19 H 0.057 0.943 20 H 0.095 0.905 21 H 0.057 0.943 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.261 0.739 25 H 0.087 0.913 26 H -0.012 1.012 27 H 0.321 0.679 28 H 0.323 0.677 29 H 0.080 0.920 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.011 -6.687 0.387 9.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.292 6.292 3 C 0.410 3.590 4 O -0.484 6.484 5 N -0.370 5.370 6 C 0.037 3.963 7 C 0.060 3.940 8 C -0.522 4.522 9 H 0.081 0.919 10 C -0.129 4.129 11 N -0.528 5.528 12 Si 0.725 3.275 13 H -0.198 1.198 14 H -0.215 1.215 15 H -0.211 1.211 16 C -0.034 4.034 17 N -0.353 5.353 18 C -0.016 4.016 19 H 0.076 0.924 20 H 0.113 0.887 21 H 0.076 0.924 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.071 0.929 25 H 0.105 0.895 26 H 0.007 0.993 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.098 0.902 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.854 -5.873 0.015 8.292 hybrid contribution -0.217 -0.162 0.214 0.346 sum -6.071 -6.035 0.229 8.564 Atomic orbital electron populations 1.23034 0.75883 1.02565 1.02226 1.86257 1.23018 1.32235 1.87665 1.17935 0.82671 0.81571 0.76871 1.90921 1.64188 1.35095 1.58158 1.49598 0.99566 1.14541 1.73265 1.23576 0.80995 0.90794 1.00972 1.19776 0.93730 0.88885 0.91577 1.20578 0.96502 1.01591 1.33524 0.91897 1.24855 0.98110 0.95319 0.94646 1.69905 1.36118 1.03292 1.43461 0.86475 0.85290 0.77733 0.77992 1.19835 1.21516 1.21103 1.21467 0.90650 0.95380 0.95910 1.58469 1.57938 1.05451 1.13432 1.23627 0.83510 0.93778 1.00706 0.92375 0.88679 0.92388 0.91208 0.90140 0.92917 0.89484 0.99348 0.86804 0.86593 0.90214 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 10.56 101.05 1.07 1.84 16 2 O -0.38 -6.88 10.55 -40.31 -0.43 -7.31 16 3 C 0.65 14.12 8.92 54.05 0.48 14.60 16 4 O -0.59 -14.18 16.86 -19.28 -0.33 -14.51 16 5 N -0.63 -13.53 3.46 -183.64 -0.64 -14.17 16 6 C 0.16 3.61 7.27 -2.96 -0.02 3.59 16 7 C 0.06 1.39 0.55 -154.73 -0.08 1.31 16 8 C -0.48 -11.96 7.93 -34.44 -0.27 -12.24 16 9 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 10 C 0.07 1.87 5.31 -17.82 -0.09 1.77 16 11 N -0.89 -23.55 11.71 55.43 0.65 -22.90 16 12 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 C 0.10 2.10 5.92 -3.82 -0.02 2.07 16 17 N -0.83 -15.78 9.18 -10.37 -0.10 -15.88 16 18 C 0.11 2.11 7.91 -2.83 -0.02 2.08 16 19 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 20 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.07 1.71 8.10 -51.93 -0.42 1.28 16 23 H 0.08 1.89 8.09 -51.93 -0.42 1.47 16 24 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 25 H 0.09 2.13 7.17 -51.93 -0.37 1.75 16 26 H -0.01 -0.25 8.02 -51.93 -0.42 -0.66 16 27 H 0.32 5.35 9.08 -39.29 -0.36 5.00 16 28 H 0.32 5.55 8.54 -39.29 -0.34 5.21 16 29 H 0.08 1.52 8.09 -51.93 -0.42 1.10 16 30 H 0.06 1.08 7.68 -51.93 -0.40 0.68 16 LS Contribution 262.30 15.07 3.95 3.95 Total: -1.00 -29.21 262.30 -4.82 -34.03 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -3.95 Total: 6.30 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 1.03 Total: 15.03 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.08 Total: -52.94 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.75 Total: -21.82 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.21 -4.82 -34.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773127.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.398 kcal (2) G-P(sol) polarization free energy of solvation -29.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds