Wall clock time and date at job start Mon Mar 30 2020 02:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34636 * 117.00392 * 2 1 4 4 O 1.21513 * 119.99754 * 359.97438 * 3 2 1 5 5 N 1.34769 * 120.00475 * 179.97438 * 3 2 1 6 6 C 1.47585 * 134.49378 * 179.97438 * 5 3 2 7 7 C 1.53952 * 86.11502 * 155.35633 * 6 5 3 8 8 C 1.50695 * 113.73902 * 137.95394 * 7 6 5 9 9 H 1.08005 * 120.00123 * 246.42025 * 8 7 6 10 10 C 1.37875 * 120.00153 * 66.14889 * 8 7 6 11 11 N 1.31510 * 120.00383 * 353.70140 * 10 8 7 12 12 Si 1.86803 * 120.00123 * 173.70026 * 10 8 7 13 13 H 1.48501 * 109.47003 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47120 * 119.99743 * 12 10 8 15 15 H 1.48498 * 109.47271 * 239.99846 * 12 10 8 16 16 C 1.52997 * 113.74198 * 269.15072 * 7 6 5 17 17 N 1.46903 * 109.47255 * 173.41865 * 16 7 6 18 18 C 1.47813 * 134.45688 * 359.86023 * 5 3 2 19 19 H 1.09001 * 109.46877 * 60.00511 * 1 2 3 20 20 H 1.09000 * 109.47096 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47552 * 300.00327 * 1 2 3 22 22 H 1.08999 * 113.76897 * 41.05457 * 6 5 3 23 23 H 1.09000 * 113.87259 * 269.66697 * 6 5 3 24 24 H 0.96998 * 120.00748 * 180.02562 * 11 10 8 25 25 H 1.09003 * 109.47641 * 293.42611 * 16 7 6 26 26 H 1.09001 * 109.47063 * 53.42146 * 16 7 6 27 27 H 1.00897 * 110.99638 * 174.45857 * 17 16 7 28 28 H 1.00897 * 111.00007 * 298.41746 * 17 16 7 29 29 H 1.08998 * 113.76701 * 90.37971 * 18 5 3 30 30 H 1.09004 * 113.83751 * 318.92580 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.3869 2.3756 0.0002 7 6 5.3632 1.3729 0.6417 8 6 6.7612 1.4458 0.0839 9 1 7.1619 0.6159 -0.4793 10 6 7.5269 2.5742 0.2877 11 7 6.9976 3.6335 0.8597 12 14 9.3161 2.5984 -0.2487 13 1 9.6665 1.2924 -0.8625 14 1 9.5202 3.6825 -1.2428 15 1 10.1836 2.8397 0.9321 16 6 5.3307 1.3741 2.1714 17 7 6.1734 0.2836 2.6799 18 6 4.4982 0.2707 0.0037 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 4.1142 3.2035 0.6547 23 1 4.6839 2.7015 -0.9966 24 1 7.5361 4.4275 1.0028 25 1 5.7071 2.3275 2.5422 26 1 4.3056 1.2307 2.5131 27 1 6.2411 0.3181 3.6861 28 1 5.8295 -0.6133 2.3711 29 1 4.8268 -0.0241 -0.9928 30 1 4.3142 -0.5792 0.6610 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259773127.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:42 Heat of formation + Delta-G solvation = -62.230012 kcal Electronic energy + Delta-G solvation = -14832.387037 eV Core-core repulsion = 12242.397948 eV Total energy + Delta-G solvation = -2589.989089 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.60202 -39.98549 -37.22325 -35.13645 -33.96856 -30.95716 -28.43353 -26.97262 -26.67571 -25.39801 -21.96963 -20.29569 -18.85831 -18.24324 -17.92847 -17.37846 -16.75437 -16.15901 -15.74083 -15.32798 -14.80659 -14.47643 -14.22218 -14.03412 -13.61193 -13.02693 -12.96794 -12.69815 -12.53644 -12.23397 -12.13784 -11.79838 -11.76227 -10.92620 -10.91470 -10.39023 -9.70587 -9.14842 -7.99759 -6.04499 1.13850 1.51759 1.56894 1.64727 1.75382 2.56287 3.01279 3.33600 3.89203 4.10568 4.34037 4.36065 4.48428 4.51347 4.61942 4.62165 4.74156 4.81203 4.90883 5.00571 5.29165 5.32617 5.64145 5.95613 6.30772 6.65063 6.81686 6.93451 6.98373 7.20962 7.61616 9.08872 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.048176 B = 0.008588 C = 0.008141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.067344 B = 3259.743753 C = 3438.452963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.375 6.375 3 C 0.653 3.347 4 O -0.623 6.623 5 N -0.631 5.631 6 C 0.157 3.843 7 C 0.054 3.946 8 C -0.484 4.484 9 H 0.064 0.936 10 C 0.031 3.969 11 N -0.915 5.915 12 Si 0.948 3.052 13 H -0.267 1.267 14 H -0.291 1.291 15 H -0.291 1.291 16 C 0.110 3.890 17 N -0.830 5.830 18 C 0.119 3.881 19 H 0.058 0.942 20 H 0.141 0.859 21 H 0.057 0.943 22 H 0.046 0.954 23 H 0.071 0.929 24 H 0.258 0.742 25 H 0.055 0.945 26 H -0.010 1.010 27 H 0.336 0.664 28 H 0.338 0.662 29 H 0.091 0.909 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.222 -8.610 0.212 10.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.289 6.289 3 C 0.409 3.591 4 O -0.517 6.517 5 N -0.372 5.372 6 C 0.036 3.964 7 C 0.052 3.948 8 C -0.523 4.523 9 H 0.082 0.918 10 C -0.169 4.169 11 N -0.554 5.554 12 Si 0.776 3.224 13 H -0.191 1.191 14 H -0.218 1.218 15 H -0.217 1.217 16 C -0.022 4.022 17 N -0.359 5.359 18 C -0.003 4.003 19 H 0.077 0.923 20 H 0.159 0.841 21 H 0.076 0.924 22 H 0.064 0.936 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.008 0.992 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.109 0.891 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.074 -7.848 -0.159 9.925 hybrid contribution -0.237 0.388 0.273 0.530 sum -6.311 -7.460 0.114 9.772 Atomic orbital electron populations 1.23491 0.73087 1.05612 1.02324 1.86262 1.25623 1.29929 1.87061 1.18016 0.82532 0.82182 0.76329 1.90896 1.64868 1.36491 1.59430 1.49511 1.00020 1.14375 1.73280 1.23358 0.82229 0.90787 0.99997 1.19808 0.92967 0.89928 0.92097 1.20821 0.97432 1.01185 1.32855 0.91815 1.25443 1.00941 0.95345 0.95125 1.70019 1.36938 1.03640 1.44796 0.85666 0.81815 0.77709 0.77201 1.19090 1.21799 1.21741 1.21163 0.90821 0.94851 0.95334 1.58350 1.57350 1.05479 1.14770 1.23605 0.81769 0.93377 1.01508 0.92271 0.84117 0.92425 0.93551 0.91111 0.93328 0.92701 0.99187 0.85140 0.84977 0.89113 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.16 10.56 113.37 1.20 2.36 16 2 O -0.38 -12.76 10.55 -55.45 -0.59 -13.35 16 3 C 0.65 27.45 8.92 129.79 1.16 28.61 16 4 O -0.62 -29.68 16.86 19.80 0.33 -29.34 16 5 N -0.63 -26.55 3.46 -965.33 -3.34 -29.89 16 6 C 0.16 7.32 7.27 86.49 0.63 7.95 16 7 C 0.05 2.37 0.55 -52.26 -0.03 2.34 16 8 C -0.48 -23.48 7.93 25.60 0.20 -23.28 16 9 H 0.06 3.04 7.82 -2.91 -0.02 3.01 16 10 C 0.03 1.57 5.31 84.65 0.45 2.02 16 11 N -0.91 -49.00 11.71 21.45 0.25 -48.75 16 12 Si 0.95 41.67 29.54 68.60 2.03 43.70 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 14 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 15 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 16 C 0.11 4.68 5.92 86.30 0.51 5.20 16 17 N -0.83 -30.17 9.18 -186.71 -1.71 -31.89 16 18 C 0.12 4.46 7.91 86.45 0.68 5.14 16 19 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 20 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 21 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 22 H 0.05 2.34 8.10 -2.39 -0.02 2.32 16 23 H 0.07 3.38 8.09 -2.39 -0.02 3.36 16 24 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 25 H 0.05 2.71 7.17 -2.39 -0.02 2.69 16 26 H -0.01 -0.41 8.02 -2.39 -0.02 -0.43 16 27 H 0.34 10.58 9.08 -89.70 -0.81 9.76 16 28 H 0.34 10.65 8.54 -89.70 -0.77 9.89 16 29 H 0.09 3.22 8.09 -2.39 -0.02 3.20 16 30 H 0.08 2.74 7.68 -2.39 -0.02 2.72 16 Total: -1.00 -61.49 262.30 1.35 -60.13 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -0.42 Total: 19.04 kcal Atomic # 6 Polarization: 25.53 SS G_CDS: 4.80 Total: 30.34 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -4.80 Total: -110.52 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -0.25 Total: -42.69 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -61.49 1.35 -60.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259773127.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.096 kcal (2) G-P(sol) polarization free energy of solvation -61.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds