Wall clock time and date at job start Mon Mar 30 2020 02:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47553 * 2 1 4 4 C 1.50696 * 109.47486 * 239.99746 * 2 1 3 5 5 H 1.07998 * 120.00611 * 240.00704 * 4 2 1 6 6 C 1.37877 * 119.99720 * 59.99751 * 4 2 1 7 7 N 1.31517 * 120.00377 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 120.00159 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46707 * 60.00260 * 8 6 4 10 10 H 1.48496 * 109.47050 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46819 * 300.00610 * 8 6 4 12 12 C 1.53003 * 109.47223 * 119.99738 * 2 1 3 13 13 H 1.09005 * 108.05357 * 57.32289 * 12 2 1 14 14 C 1.53183 * 108.31084 * 300.20224 * 12 2 1 15 15 C 1.51587 * 106.79970 * 146.77986 * 14 12 2 16 16 C 1.52982 * 109.41381 * 102.70360 * 15 14 12 17 17 C 1.53781 * 115.50835 * 318.18665 * 16 15 14 18 18 S 1.79967 * 113.13327 * 315.96754 * 17 16 15 19 19 C 1.45382 * 108.31073 * 174.44407 * 12 2 1 20 20 H 1.08990 * 109.47216 * 186.20250 * 1 2 3 21 21 H 1.09002 * 109.46854 * 306.20326 * 1 2 3 22 22 H 1.09001 * 109.46815 * 66.19904 * 1 2 3 23 23 H 0.97001 * 120.00314 * 179.97438 * 7 6 4 24 24 H 1.08999 * 109.98185 * 266.10421 * 14 12 2 25 25 H 1.09002 * 109.98196 * 27.45938 * 14 12 2 26 26 H 1.09002 * 109.48453 * 342.71672 * 15 14 12 27 27 H 1.09000 * 109.49171 * 222.68754 * 15 14 12 28 28 H 1.08998 * 108.27373 * 196.62319 * 16 15 14 29 29 H 1.09001 * 108.27601 * 79.74973 * 16 15 14 30 30 H 1.09008 * 108.74764 * 195.02311 * 17 16 15 31 31 H 1.08994 * 108.74864 * 76.91164 * 17 16 15 32 32 H 1.08998 * 109.43958 * 306.32646 * 19 12 2 33 33 H 1.09009 * 109.43097 * 66.18936 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8064 -1.1210 -4.0080 12 6 2.0400 -0.7212 1.2493 13 1 1.6251 -1.7292 1.2505 14 6 1.5107 0.0185 2.4818 15 6 1.2766 -1.0276 3.5536 16 6 2.4167 -0.9758 4.5724 17 6 3.8257 -0.8021 3.9812 18 16 4.1236 -1.8454 2.5454 19 6 3.4874 -0.8233 1.1588 20 1 -0.3633 -1.0215 0.1110 21 1 -0.3633 0.6070 0.8293 22 1 -0.3633 0.4147 -0.9403 23 1 0.7095 1.1617 -3.4844 24 1 2.2472 0.7452 2.8249 25 1 0.5740 0.5211 2.2408 26 1 1.2429 -2.0161 3.0956 27 1 0.3305 -0.8275 4.0566 28 1 2.4003 -1.8994 5.1509 29 1 2.2279 -0.1472 5.2549 30 1 4.5603 -1.0447 4.7492 31 1 3.9576 0.2401 3.6904 32 1 3.7598 -1.2877 0.2111 33 1 3.9253 0.1735 1.2125 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259869279.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:27 Heat of formation + Delta-G solvation = -23.290883 kcal Electronic energy + Delta-G solvation = -13079.986608 eV Core-core repulsion = 11037.979261 eV Total energy + Delta-G solvation = -2042.007347 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.91660 -34.51797 -32.16236 -28.99887 -28.91776 -25.49388 -24.11184 -22.09365 -20.01077 -19.07275 -16.41285 -15.79690 -15.15246 -14.55870 -14.45003 -13.84751 -13.23716 -12.99669 -12.59870 -12.14666 -11.94860 -11.54899 -11.10843 -10.96554 -10.87112 -10.59608 -10.39989 -10.21631 -10.13787 -9.87035 -9.76498 -9.56179 -8.73305 -8.67348 -8.30268 -7.21432 -5.99107 -4.06457 2.27356 3.09379 3.31623 3.36287 3.39305 4.42760 4.95888 5.12132 5.17169 5.31265 5.54981 5.60066 5.72028 5.86001 6.02965 6.11337 6.14702 6.25181 6.43548 6.61332 6.66497 6.77248 6.89553 7.00623 7.09673 7.23950 7.39391 7.72004 7.97700 8.15766 8.44024 8.96511 9.58732 11.05893 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.043155 B = 0.009311 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.667546 B = 3006.445782 C = 3476.938201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.051 3.949 3 H 0.024 0.976 4 C -0.515 4.515 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.887 3.113 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C -0.090 4.090 13 H 0.067 0.933 14 C -0.124 4.124 15 C -0.118 4.118 16 C -0.109 4.109 17 C -0.079 4.079 18 S -0.314 6.314 19 C -0.033 4.033 20 H 0.022 0.978 21 H 0.011 0.989 22 H 0.082 0.918 23 H 0.260 0.740 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.261 -1.516 10.527 10.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.030 3.970 3 H 0.042 0.958 4 C -0.553 4.553 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.110 4.110 13 H 0.085 0.915 14 C -0.161 4.161 15 C -0.156 4.156 16 C -0.149 4.149 17 C -0.228 4.228 18 S -0.085 6.085 19 C -0.179 4.179 20 H 0.041 0.959 21 H 0.030 0.970 22 H 0.101 0.899 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.140 0.860 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.701 -2.433 10.383 11.001 hybrid contribution -0.208 0.761 -0.804 1.127 sum 2.493 -1.672 9.579 10.038 Atomic orbital electron populations 1.21875 0.98739 0.98003 1.00903 1.18802 0.92597 0.95448 0.90161 0.95790 1.21226 1.31110 1.12295 0.90711 0.92493 1.24957 0.95055 0.94943 0.98928 1.69874 1.36641 1.22886 1.23365 0.86737 0.79258 0.79897 0.82616 1.20274 1.21344 1.20268 1.20256 0.93579 1.00549 0.96633 0.91477 1.21703 1.01782 0.97436 0.95213 1.21574 0.96589 1.00756 0.96689 1.21736 0.93394 1.01379 0.98395 1.23161 0.99788 1.01597 0.98229 1.86653 1.82243 1.34742 1.04852 1.22564 0.98842 1.00023 0.96472 0.95853 0.96997 0.89907 0.93004 0.92957 0.90601 0.90886 0.92544 0.92523 0.92500 0.89218 0.90462 0.85952 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.63 37.16 0.32 -2.91 16 2 C 0.05 1.21 1.85 -91.77 -0.17 1.04 16 3 H 0.02 0.63 8.14 -51.92 -0.42 0.20 16 4 C -0.52 -13.55 7.69 -34.44 -0.26 -13.82 16 5 H 0.06 1.48 6.25 -52.49 -0.33 1.15 16 6 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 7 N -0.89 -25.03 11.29 55.43 0.63 -24.41 16 8 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C -0.09 -1.78 1.17 -94.11 -0.11 -1.89 16 13 H 0.07 1.41 6.99 -51.93 -0.36 1.05 16 14 C -0.12 -2.11 4.99 -27.35 -0.14 -2.24 16 15 C -0.12 -1.75 5.55 -27.46 -0.15 -1.90 16 16 C -0.11 -1.42 5.63 -26.33 -0.15 -1.57 16 17 C -0.08 -1.10 5.59 37.56 0.21 -0.89 16 18 S -0.31 -5.34 21.56 -107.50 -2.32 -7.65 16 19 C -0.03 -0.62 5.09 33.57 0.17 -0.45 16 20 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.01 0.24 6.17 -51.93 -0.32 -0.08 16 22 H 0.08 2.18 5.93 -51.93 -0.31 1.87 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.05 0.85 6.24 -51.93 -0.32 0.53 16 25 H 0.08 1.34 5.53 -51.93 -0.29 1.05 16 26 H 0.07 1.18 6.84 -51.93 -0.36 0.82 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.09 8.14 -51.69 -0.42 0.67 16 31 H 0.08 1.07 7.07 -51.70 -0.37 0.70 16 32 H 0.12 2.56 5.76 -51.93 -0.30 2.27 16 33 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 LS Contribution 257.27 15.07 3.88 3.88 Total: -1.00 -26.84 257.27 -8.25 -35.09 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.04 Total: 0.11 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -0.37 Total: -23.03 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.63 Total: -24.41 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -5.34 SS G_CDS: -2.32 Total: -7.65 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.84 -8.25 -35.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869279.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.802 kcal (2) G-P(sol) polarization free energy of solvation -26.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds