Wall clock time and date at job start Mon Mar 30 2020 02:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47553 * 2 1 4 4 C 1.50696 * 109.47486 * 239.99746 * 2 1 3 5 5 H 1.07998 * 120.00611 * 240.00704 * 4 2 1 6 6 C 1.37877 * 119.99720 * 59.99751 * 4 2 1 7 7 N 1.31517 * 120.00377 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 120.00159 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46707 * 60.00260 * 8 6 4 10 10 H 1.48496 * 109.47050 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.46819 * 300.00610 * 8 6 4 12 12 C 1.53003 * 109.47223 * 119.99738 * 2 1 3 13 13 H 1.09005 * 108.05357 * 57.32289 * 12 2 1 14 14 C 1.53183 * 108.31084 * 300.20224 * 12 2 1 15 15 C 1.51587 * 106.79970 * 146.77986 * 14 12 2 16 16 C 1.52982 * 109.41381 * 102.70360 * 15 14 12 17 17 C 1.53781 * 115.50835 * 318.18665 * 16 15 14 18 18 S 1.79967 * 113.13327 * 315.96754 * 17 16 15 19 19 C 1.45382 * 108.31073 * 174.44407 * 12 2 1 20 20 H 1.08990 * 109.47216 * 186.20250 * 1 2 3 21 21 H 1.09002 * 109.46854 * 306.20326 * 1 2 3 22 22 H 1.09001 * 109.46815 * 66.19904 * 1 2 3 23 23 H 0.97001 * 120.00314 * 179.97438 * 7 6 4 24 24 H 1.08999 * 109.98185 * 266.10421 * 14 12 2 25 25 H 1.09002 * 109.98196 * 27.45938 * 14 12 2 26 26 H 1.09002 * 109.48453 * 342.71672 * 15 14 12 27 27 H 1.09000 * 109.49171 * 222.68754 * 15 14 12 28 28 H 1.08998 * 108.27373 * 196.62319 * 16 15 14 29 29 H 1.09001 * 108.27601 * 79.74973 * 16 15 14 30 30 H 1.09008 * 108.74764 * 195.02311 * 17 16 15 31 31 H 1.08994 * 108.74864 * 76.91164 * 17 16 15 32 32 H 1.08998 * 109.43958 * 306.32646 * 19 12 2 33 33 H 1.09009 * 109.43097 * 66.18936 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8064 -1.1210 -4.0080 12 6 2.0400 -0.7212 1.2493 13 1 1.6251 -1.7292 1.2505 14 6 1.5107 0.0185 2.4818 15 6 1.2766 -1.0276 3.5536 16 6 2.4167 -0.9758 4.5724 17 6 3.8257 -0.8021 3.9812 18 16 4.1236 -1.8454 2.5454 19 6 3.4874 -0.8233 1.1588 20 1 -0.3633 -1.0215 0.1110 21 1 -0.3633 0.6070 0.8293 22 1 -0.3633 0.4147 -0.9403 23 1 0.7095 1.1617 -3.4844 24 1 2.2472 0.7452 2.8249 25 1 0.5740 0.5211 2.2408 26 1 1.2429 -2.0161 3.0956 27 1 0.3305 -0.8275 4.0566 28 1 2.4003 -1.8994 5.1509 29 1 2.2279 -0.1472 5.2549 30 1 4.5603 -1.0447 4.7492 31 1 3.9576 0.2401 3.6904 32 1 3.7598 -1.2877 0.2111 33 1 3.9253 0.1735 1.2125 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259869279.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:26 Heat of formation + Delta-G solvation = -36.376108 kcal Electronic energy + Delta-G solvation = -13080.554026 eV Core-core repulsion = 11037.979261 eV Total energy + Delta-G solvation = -2042.574765 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.45719 -36.02856 -33.96767 -30.81582 -30.21768 -27.29896 -25.59228 -23.77711 -21.29300 -20.76601 -18.38908 -17.22124 -16.65307 -16.18492 -15.86410 -15.20750 -14.79825 -14.58304 -14.36734 -13.57401 -13.34054 -13.05816 -12.90904 -12.68355 -12.49918 -12.28662 -12.03402 -12.00003 -11.58341 -11.42066 -11.30449 -11.05408 -10.59731 -10.41892 -10.21799 -8.57523 -8.06361 -6.19356 0.93918 1.41698 1.42127 1.49255 1.75727 2.43837 3.21241 3.84611 3.89128 4.04375 4.25497 4.30891 4.34540 4.66111 4.72386 4.78330 4.89615 4.93037 5.00181 5.06491 5.22890 5.29641 5.37216 5.39762 5.41119 5.55379 5.59002 5.67410 6.01692 6.19462 6.41628 6.91788 7.48515 8.97317 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.043155 B = 0.009311 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.667546 B = 3006.445782 C = 3476.938201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.048 3.952 3 H -0.004 1.004 4 C -0.525 4.525 5 H 0.055 0.945 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.944 3.056 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.272 1.272 12 C -0.075 4.075 13 H 0.053 0.947 14 C -0.118 4.118 15 C -0.116 4.116 16 C -0.107 4.107 17 C -0.075 4.075 18 S -0.323 6.323 19 C -0.032 4.032 20 H 0.023 0.977 21 H 0.035 0.965 22 H 0.052 0.948 23 H 0.259 0.741 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.676 -1.924 12.318 12.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.027 3.973 3 H 0.014 0.986 4 C -0.563 4.563 5 H 0.073 0.927 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.770 3.230 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.198 1.198 12 C -0.095 4.095 13 H 0.071 0.929 14 C -0.155 4.155 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.223 4.223 18 S -0.094 6.094 19 C -0.179 4.179 20 H 0.042 0.958 21 H 0.054 0.946 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.132 0.868 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.120 -2.849 12.180 12.892 hybrid contribution -0.321 0.891 -1.298 1.607 sum 2.799 -1.958 10.882 11.406 Atomic orbital electron populations 1.21730 0.98507 0.98171 1.00250 1.18775 0.92809 0.94086 0.91596 0.98564 1.21580 1.30679 1.12186 0.91889 0.92701 1.25671 0.95450 0.95702 1.01678 1.70004 1.37778 1.24143 1.23742 0.85825 0.78858 0.78845 0.79438 1.19929 1.21135 1.19752 1.20114 0.93832 0.99441 0.96105 0.92867 1.21636 1.01372 0.97973 0.94568 1.21520 0.98547 0.98844 0.96435 1.21708 0.91810 1.03137 0.98020 1.23332 1.01325 1.00853 0.96828 1.86667 1.82002 1.35182 1.05559 1.22291 0.98515 1.00174 0.96950 0.95769 0.94647 0.92902 0.93181 0.92000 0.91357 0.92490 0.90636 0.91327 0.89978 0.86758 0.90146 0.88514 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 8.63 71.98 0.62 -5.49 16 2 C 0.05 2.34 1.85 -11.54 -0.02 2.32 16 3 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 4 C -0.53 -28.19 7.69 25.60 0.20 -27.99 16 5 H 0.05 2.91 6.25 -2.91 -0.02 2.89 16 6 C 0.01 0.74 5.29 84.65 0.45 1.18 16 7 N -0.92 -52.76 11.29 21.45 0.24 -52.52 16 8 Si 0.94 43.66 29.54 68.60 2.03 45.69 16 9 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 12 C -0.07 -2.95 1.17 -13.05 -0.02 -2.96 16 13 H 0.05 2.23 6.99 -2.38 -0.02 2.22 16 14 C -0.12 -3.81 4.99 30.19 0.15 -3.66 16 15 C -0.12 -3.10 5.55 30.12 0.17 -2.93 16 16 C -0.11 -2.36 5.63 30.85 0.17 -2.18 16 17 C -0.08 -1.83 5.59 72.25 0.40 -1.42 16 18 S -0.32 -10.47 21.56 -56.49 -1.22 -11.69 16 19 C -0.03 -1.23 5.09 69.66 0.35 -0.88 16 20 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.03 1.47 6.17 -2.39 -0.01 1.45 16 22 H 0.05 2.84 5.93 -2.39 -0.01 2.82 16 23 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 24 H 0.06 1.87 6.24 -2.39 -0.01 1.86 16 25 H 0.07 2.30 5.53 -2.39 -0.01 2.29 16 26 H 0.06 1.72 6.84 -2.39 -0.02 1.71 16 27 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.11 2.29 8.14 -2.53 -0.02 2.27 16 31 H 0.08 1.94 7.07 -2.54 -0.02 1.93 16 32 H 0.10 4.16 5.76 -2.39 -0.01 4.15 16 33 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 Total: -1.00 -57.66 257.27 4.60 -53.06 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.07 Total: 9.48 kcal Atomic # 6 Polarization: -46.50 SS G_CDS: 2.48 Total: -44.02 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.24 Total: -52.52 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -10.47 SS G_CDS: -1.22 Total: -11.69 kcal Total: -57.66 4.60 -53.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869279.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.682 kcal (2) G-P(sol) polarization free energy of solvation -57.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds