Wall clock time and date at job start Mon Mar 30 2020 02:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 109.47459 * 2 1 4 4 C 1.50703 * 109.46851 * 119.99991 * 2 1 3 5 5 H 1.08004 * 119.99828 * 120.00044 * 4 2 1 6 6 C 1.37870 * 120.00419 * 299.99780 * 4 2 1 7 7 N 1.31514 * 119.99570 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00534 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47010 * 59.99837 * 8 6 4 10 10 H 1.48497 * 109.47374 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46807 * 299.99970 * 8 6 4 12 12 C 1.53000 * 109.46899 * 239.99661 * 2 1 3 13 13 H 1.08997 * 109.31245 * 300.40427 * 12 2 1 14 14 C 1.44825 * 109.30737 * 60.00704 * 12 2 1 15 15 C 1.53071 * 115.41720 * 184.16590 * 14 12 2 16 16 C 1.51418 * 105.15337 * 265.34391 * 15 14 12 17 17 C 1.54712 * 109.07430 * 105.24643 * 16 15 14 18 18 S 1.82331 * 111.04070 * 321.00528 * 17 16 15 19 19 C 1.55247 * 109.14638 * 180.90099 * 12 2 1 20 20 H 1.08997 * 109.47775 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47641 * 300.00185 * 1 2 3 22 22 H 1.09002 * 109.47193 * 59.99734 * 1 2 3 23 23 H 0.97002 * 120.00194 * 180.02562 * 7 6 4 24 24 H 1.08996 * 108.29177 * 62.62009 * 14 12 2 25 25 H 1.09001 * 108.28576 * 305.70715 * 14 12 2 26 26 H 1.09002 * 110.32661 * 24.29443 * 15 14 12 27 27 H 1.09004 * 110.32473 * 146.39226 * 15 14 12 28 28 H 1.09004 * 109.52739 * 225.41278 * 16 15 14 29 29 H 1.09000 * 109.52329 * 345.61974 * 16 15 14 30 30 H 1.08995 * 109.22304 * 200.54089 * 17 16 15 31 31 H 1.08996 * 108.99722 * 81.32632 * 17 16 15 32 32 H 1.08999 * 109.43245 * 286.60694 * 19 12 2 33 33 H 1.09005 * 109.42863 * 46.51131 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.8073 -1.1191 4.0078 10 1 1.8268 -0.4200 5.2205 11 1 1.8278 -2.5198 4.0082 12 6 2.0399 -0.7213 -1.2492 13 1 1.6692 -1.7463 -1.2502 14 6 1.5553 -0.0358 -2.4293 15 6 1.9021 -0.7003 -3.7640 16 6 3.1711 -0.0172 -4.2283 17 6 4.3673 -0.9756 -4.0176 18 16 4.1997 -1.8978 -2.4536 19 6 3.5921 -0.7370 -1.2302 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 0.7087 1.1613 3.4844 24 1 1.9673 0.9732 -2.4322 25 1 0.4705 0.0429 -2.3579 26 1 2.0764 -1.7669 -3.6219 27 1 1.1007 -0.5413 -4.4856 28 1 3.0830 0.2359 -5.2849 29 1 3.3296 0.8910 -3.6469 30 1 5.2909 -0.3972 -3.9952 31 1 4.4068 -1.6815 -4.8472 32 1 3.9677 0.2605 -1.4586 33 1 3.9396 -1.0378 -0.2417 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259869280.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:28 Heat of formation + Delta-G solvation = -22.433148 kcal Electronic energy + Delta-G solvation = -13051.545723 eV Core-core repulsion = 11009.575570 eV Total energy + Delta-G solvation = -2041.970153 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.96720 -34.53467 -32.14803 -29.13044 -28.43946 -25.33733 -24.15018 -21.95996 -20.67721 -18.93605 -16.31621 -15.98267 -14.96850 -14.62076 -14.26255 -13.83416 -13.31647 -13.03540 -12.53073 -12.01464 -11.82903 -11.48306 -11.38640 -10.99204 -10.86181 -10.71688 -10.48782 -10.25029 -10.14169 -9.85522 -9.57392 -9.46356 -8.87630 -8.71921 -8.30059 -7.08187 -5.96817 -4.02957 2.14594 3.20628 3.33271 3.37750 3.40991 4.45022 4.92819 4.99654 5.29625 5.33659 5.43243 5.55600 5.71540 5.82930 5.91926 6.07744 6.18793 6.28275 6.46937 6.55926 6.68156 6.84346 6.91940 7.02110 7.12476 7.23829 7.38714 7.74787 7.99765 8.16984 8.47325 9.00199 9.61870 11.08876 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042433 B = 0.009276 C = 0.008005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.713089 B = 3017.702895 C = 3496.924820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.052 3.948 3 H 0.023 0.977 4 C -0.511 4.511 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.887 3.113 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C -0.068 4.068 13 H 0.067 0.933 14 C -0.120 4.120 15 C -0.134 4.134 16 C -0.123 4.123 17 C -0.082 4.082 18 S -0.288 6.288 19 C -0.065 4.065 20 H 0.025 0.975 21 H 0.081 0.919 22 H 0.010 0.990 23 H 0.259 0.741 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 -1.370 -10.982 11.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.032 3.968 3 H 0.042 0.958 4 C -0.549 4.549 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.089 4.089 13 H 0.085 0.915 14 C -0.158 4.158 15 C -0.172 4.172 16 C -0.162 4.162 17 C -0.230 4.230 18 S -0.060 6.060 19 C -0.213 4.213 20 H 0.044 0.956 21 H 0.100 0.900 22 H 0.029 0.971 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.533 -2.282 -10.687 11.485 hybrid contribution 0.074 0.932 0.737 1.190 sum 3.607 -1.350 -9.951 10.670 Atomic orbital electron populations 1.21870 0.98733 0.98974 1.00012 1.18707 0.92455 0.95364 0.90276 0.95845 1.21172 1.30962 1.12194 0.90558 0.92571 1.24959 0.95123 0.94972 0.98925 1.69879 1.36811 1.22993 1.23307 0.86730 0.79230 0.79890 0.82606 1.20305 1.21387 1.20291 1.20208 0.91711 1.00787 0.96179 0.91505 1.20499 1.02145 0.99100 0.94008 1.21745 0.96059 1.02091 0.97300 1.22085 0.94493 0.98246 1.01363 1.23903 1.00843 1.01120 0.97165 1.86002 1.86769 1.25743 1.07452 1.23811 0.99990 0.98628 0.98825 0.95611 0.90049 0.97085 0.93062 0.93195 0.91873 0.89336 0.92346 0.91715 0.91447 0.90888 0.88869 0.91221 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.56 37.15 0.32 -2.97 16 2 C 0.05 1.26 1.87 -91.77 -0.17 1.08 16 3 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.51 -13.63 7.63 -34.44 -0.26 -13.89 16 5 H 0.06 1.49 6.75 -52.48 -0.35 1.13 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -25.34 11.32 55.43 0.63 -24.71 16 8 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C -0.07 -1.37 1.45 -93.25 -0.14 -1.51 16 13 H 0.07 1.43 8.10 -51.93 -0.42 1.00 16 14 C -0.12 -2.08 4.06 -30.52 -0.12 -2.21 16 15 C -0.13 -1.94 5.77 -27.49 -0.16 -2.10 16 16 C -0.12 -1.59 5.71 -26.63 -0.15 -1.74 16 17 C -0.08 -1.08 6.59 38.06 0.25 -0.83 16 18 S -0.29 -4.83 20.08 -107.50 -2.16 -6.99 16 19 C -0.06 -1.23 5.15 38.35 0.20 -1.04 16 20 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 22 H 0.01 0.22 6.29 -51.93 -0.33 -0.11 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.05 0.87 6.71 -51.93 -0.35 0.52 16 25 H 0.06 1.12 5.85 -51.93 -0.30 0.82 16 26 H 0.09 1.37 6.23 -51.93 -0.32 1.05 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.93 6.57 -51.93 -0.34 0.59 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.28 7.90 -51.76 -0.41 0.87 16 33 H 0.12 2.48 6.25 -51.75 -0.32 2.16 16 LS Contribution 258.24 15.07 3.89 3.89 Total: -1.00 -27.19 258.24 -8.13 -35.32 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.14 Total: -0.14 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -0.33 Total: -23.62 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.63 Total: -24.71 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -2.16 Total: -6.99 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.19 -8.13 -35.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869280.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.883 kcal (2) G-P(sol) polarization free energy of solvation -27.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds