Wall clock time and date at job start Mon Mar 30 2020 02:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 109.47459 * 2 1 4 4 C 1.50703 * 109.46851 * 119.99991 * 2 1 3 5 5 H 1.08004 * 119.99828 * 120.00044 * 4 2 1 6 6 C 1.37870 * 120.00419 * 299.99780 * 4 2 1 7 7 N 1.31514 * 119.99570 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00534 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47010 * 59.99837 * 8 6 4 10 10 H 1.48497 * 109.47374 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46807 * 299.99970 * 8 6 4 12 12 C 1.53000 * 109.46899 * 239.99661 * 2 1 3 13 13 H 1.08997 * 109.31245 * 300.40427 * 12 2 1 14 14 C 1.44825 * 109.30737 * 60.00704 * 12 2 1 15 15 C 1.53071 * 115.41720 * 184.16590 * 14 12 2 16 16 C 1.51418 * 105.15337 * 265.34391 * 15 14 12 17 17 C 1.54712 * 109.07430 * 105.24643 * 16 15 14 18 18 S 1.82331 * 111.04070 * 321.00528 * 17 16 15 19 19 C 1.55247 * 109.14638 * 180.90099 * 12 2 1 20 20 H 1.08997 * 109.47775 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47641 * 300.00185 * 1 2 3 22 22 H 1.09002 * 109.47193 * 59.99734 * 1 2 3 23 23 H 0.97002 * 120.00194 * 180.02562 * 7 6 4 24 24 H 1.08996 * 108.29177 * 62.62009 * 14 12 2 25 25 H 1.09001 * 108.28576 * 305.70715 * 14 12 2 26 26 H 1.09002 * 110.32661 * 24.29443 * 15 14 12 27 27 H 1.09004 * 110.32473 * 146.39226 * 15 14 12 28 28 H 1.09004 * 109.52739 * 225.41278 * 16 15 14 29 29 H 1.09000 * 109.52329 * 345.61974 * 16 15 14 30 30 H 1.08995 * 109.22304 * 200.54089 * 17 16 15 31 31 H 1.08996 * 108.99722 * 81.32632 * 17 16 15 32 32 H 1.08999 * 109.43245 * 286.60694 * 19 12 2 33 33 H 1.09005 * 109.42863 * 46.51131 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.8073 -1.1191 4.0078 10 1 1.8268 -0.4200 5.2205 11 1 1.8278 -2.5198 4.0082 12 6 2.0399 -0.7213 -1.2492 13 1 1.6692 -1.7463 -1.2502 14 6 1.5553 -0.0358 -2.4293 15 6 1.9021 -0.7003 -3.7640 16 6 3.1711 -0.0172 -4.2283 17 6 4.3673 -0.9756 -4.0176 18 16 4.1997 -1.8978 -2.4536 19 6 3.5921 -0.7370 -1.2302 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 0.7087 1.1613 3.4844 24 1 1.9673 0.9732 -2.4322 25 1 0.4705 0.0429 -2.3579 26 1 2.0764 -1.7669 -3.6219 27 1 1.1007 -0.5413 -4.4856 28 1 3.0830 0.2359 -5.2849 29 1 3.3296 0.8910 -3.6469 30 1 5.2909 -0.3972 -3.9952 31 1 4.4068 -1.6815 -4.8472 32 1 3.9677 0.2605 -1.4586 33 1 3.9396 -1.0378 -0.2417 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259869280.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:28 Heat of formation + Delta-G solvation = -35.936688 kcal Electronic energy + Delta-G solvation = -13052.131281 eV Core-core repulsion = 11009.575570 eV Total energy + Delta-G solvation = -2042.555710 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.48532 -36.09201 -33.95146 -30.83711 -29.88918 -27.21795 -25.65973 -23.54152 -21.97162 -20.65029 -18.33179 -17.33822 -16.60611 -16.33827 -15.47783 -15.18559 -14.87801 -14.57220 -14.24919 -13.72898 -13.22980 -12.99082 -12.88470 -12.80246 -12.51152 -12.44463 -12.12021 -12.06912 -11.58496 -11.51379 -11.08275 -11.02749 -10.69692 -10.40811 -10.34490 -8.42832 -8.06950 -6.19086 0.87247 1.41070 1.41672 1.49011 1.87769 2.43728 3.20851 3.79316 3.86695 4.02638 4.19045 4.24368 4.42938 4.61040 4.71887 4.82832 4.85237 4.89609 5.03494 5.06338 5.17363 5.29109 5.34577 5.38251 5.40988 5.55111 5.64324 5.65994 6.01081 6.16780 6.41794 6.91788 7.48504 8.97450 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042433 B = 0.009276 C = 0.008005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.713089 B = 3017.702895 C = 3496.924820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.049 3.951 3 H -0.005 1.005 4 C -0.521 4.521 5 H 0.052 0.948 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.945 3.055 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.274 1.274 12 C -0.055 4.055 13 H 0.052 0.948 14 C -0.119 4.119 15 C -0.127 4.127 16 C -0.120 4.120 17 C -0.072 4.072 18 S -0.305 6.305 19 C -0.060 4.060 20 H 0.023 0.977 21 H 0.052 0.948 22 H 0.035 0.965 23 H 0.259 0.741 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.981 -1.827 -12.836 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.029 3.971 3 H 0.014 0.986 4 C -0.559 4.559 5 H 0.070 0.930 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.772 3.228 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.076 4.076 13 H 0.071 0.929 14 C -0.156 4.156 15 C -0.165 4.165 16 C -0.159 4.159 17 C -0.220 4.220 18 S -0.076 6.076 19 C -0.208 4.208 20 H 0.042 0.958 21 H 0.071 0.929 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.136 0.864 32 H 0.090 0.910 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.181 -2.746 -12.547 13.508 hybrid contribution -0.111 1.078 1.248 1.653 sum 4.070 -1.668 -11.299 12.125 Atomic orbital electron populations 1.21723 0.98505 0.98674 0.99792 1.18676 0.92681 0.93990 0.91723 0.98645 1.21497 1.30594 1.12060 0.91795 0.92983 1.25682 0.95485 0.95728 1.01713 1.70009 1.37879 1.24215 1.23741 0.85804 0.78834 0.78849 0.79361 1.19773 1.21063 1.19903 1.19989 0.92505 0.99498 0.95564 0.92920 1.20455 1.01523 0.98998 0.94615 1.21686 0.97728 1.01315 0.95739 1.22057 0.93273 0.97409 1.03169 1.24042 1.01668 1.01488 0.94796 1.86005 1.86425 1.25931 1.09282 1.23514 0.99116 0.99381 0.98832 0.95786 0.92927 0.94609 0.93189 0.93341 0.92470 0.90155 0.90153 0.88439 0.92389 0.89503 0.86430 0.91042 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.24 8.56 71.98 0.62 -5.63 16 2 C 0.05 2.44 1.87 -11.54 -0.02 2.42 16 3 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 4 C -0.52 -28.48 7.63 25.60 0.20 -28.28 16 5 H 0.05 2.82 6.75 -2.91 -0.02 2.81 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -53.42 11.32 21.44 0.24 -53.18 16 8 Si 0.95 44.16 29.54 68.60 2.03 46.19 16 9 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 12 C -0.05 -2.21 1.45 -12.50 -0.02 -2.23 16 13 H 0.05 2.26 8.10 -2.39 -0.02 2.24 16 14 C -0.12 -3.97 4.06 28.14 0.11 -3.85 16 15 C -0.13 -3.29 5.77 30.10 0.17 -3.12 16 16 C -0.12 -2.66 5.71 30.66 0.18 -2.48 16 17 C -0.07 -1.64 6.59 72.57 0.48 -1.16 16 18 S -0.30 -9.76 20.08 -56.49 -1.13 -10.89 16 19 C -0.06 -2.30 5.15 72.75 0.38 -1.93 16 20 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 21 H 0.05 2.85 6.07 -2.39 -0.01 2.83 16 22 H 0.04 1.50 6.29 -2.39 -0.02 1.49 16 23 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 24 H 0.05 1.63 6.71 -2.39 -0.02 1.62 16 25 H 0.06 1.96 5.85 -2.39 -0.01 1.94 16 26 H 0.08 2.27 6.23 -2.39 -0.01 2.25 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.42 6.57 -2.39 -0.02 1.41 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.07 2.63 7.90 -2.50 -0.02 2.61 16 33 H 0.09 3.88 6.25 -2.50 -0.02 3.86 16 Total: -1.00 -58.90 258.24 4.74 -54.15 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.07 Total: 8.87 kcal Atomic # 6 Polarization: -47.68 SS G_CDS: 2.54 Total: -45.14 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.24 Total: -53.18 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -9.76 SS G_CDS: -1.13 Total: -10.89 kcal Total: -58.90 4.74 -54.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869280.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.218 kcal (2) G-P(sol) polarization free energy of solvation -58.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds