Wall clock time and date at job start Mon Mar 30 2020 02:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47268 * 2 1 4 4 C 1.50700 * 109.47345 * 120.00102 * 2 1 3 5 5 H 1.07993 * 120.00479 * 119.99378 * 4 2 1 6 6 C 1.37879 * 119.99577 * 299.99973 * 4 2 1 7 7 N 1.31522 * 120.00167 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47172 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46927 * 119.99881 * 8 6 4 11 11 H 1.48506 * 109.47077 * 239.99947 * 8 6 4 12 12 C 1.53005 * 109.46885 * 239.99882 * 2 1 3 13 13 H 1.08994 * 107.89440 * 56.62624 * 12 2 1 14 14 C 1.54969 * 108.03802 * 300.04319 * 12 2 1 15 15 C 1.53215 * 116.92565 * 192.03454 * 14 12 2 16 16 C 1.49716 * 110.25707 * 317.77669 * 15 14 12 17 17 C 1.52296 * 104.75111 * 99.49903 * 16 15 14 18 18 S 1.74435 * 114.79931 * 267.52589 * 17 16 15 19 19 C 1.50370 * 108.03700 * 173.16503 * 12 2 1 20 20 H 1.09004 * 109.46763 * 66.44603 * 1 2 3 21 21 H 1.08997 * 109.46836 * 186.44463 * 1 2 3 22 22 H 1.09000 * 109.46782 * 306.44666 * 1 2 3 23 23 H 0.96993 * 119.99671 * 180.02562 * 7 6 4 24 24 H 1.09002 * 107.95569 * 70.15840 * 14 12 2 25 25 H 1.09001 * 107.95965 * 313.91700 * 14 12 2 26 26 H 1.09001 * 109.33967 * 197.53382 * 15 14 12 27 27 H 1.08999 * 109.33500 * 78.01769 * 15 14 12 28 28 H 1.08996 * 110.37443 * 340.69133 * 16 15 14 29 29 H 1.09005 * 110.37262 * 218.30133 * 16 15 14 30 30 H 1.08999 * 108.41682 * 146.14443 * 17 16 15 31 31 H 1.09002 * 108.41700 * 28.90373 * 17 16 15 32 32 H 1.08999 * 109.52082 * 92.71476 * 19 12 2 33 33 H 1.08998 * 109.52284 * 332.53503 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.1465 -2.2869 3.6038 10 1 3.1467 -0.1872 4.8164 11 1 1.1661 -1.5866 4.8161 12 6 2.0400 -0.7213 -1.2493 13 1 1.6137 -0.2242 -2.1205 14 6 1.5044 -2.1751 -1.2162 15 6 2.1157 -3.1626 -2.2155 16 6 2.2743 -2.5132 -3.5551 17 6 3.7402 -2.1050 -3.6171 18 16 4.0712 -0.4811 -3.0728 19 6 3.5336 -0.5569 -1.3048 20 1 -0.3633 0.4107 -0.9421 21 1 -0.3633 -1.0212 0.1153 22 1 -0.3633 0.6105 0.8267 23 1 0.7096 1.1619 3.4843 24 1 0.4292 -2.1412 -1.3923 25 1 1.6648 -2.5697 -0.2129 26 1 1.4634 -4.0308 -2.3101 27 1 3.0917 -3.4852 -1.8529 28 1 1.6324 -1.6354 -3.6296 29 1 2.0438 -3.2223 -4.3503 30 1 4.0804 -2.1986 -4.6484 31 1 4.3168 -2.7979 -3.0043 32 1 4.0119 -1.4049 -0.8147 33 1 3.8176 0.3654 -0.7979 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259869283.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:30 Heat of formation + Delta-G solvation = -25.678915 kcal Electronic energy + Delta-G solvation = -13168.972710 eV Core-core repulsion = 11126.861810 eV Total energy + Delta-G solvation = -2042.110900 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.69982 -34.71815 -32.00510 -28.96105 -28.68535 -25.10676 -24.21416 -22.53298 -20.62832 -18.39259 -16.43721 -15.96628 -14.99860 -14.54448 -14.14391 -13.81202 -13.46087 -12.78909 -12.49745 -12.13753 -11.92516 -11.62220 -11.42042 -11.02889 -10.86888 -10.57432 -10.47062 -10.11272 -9.98085 -9.95257 -9.59390 -9.45440 -8.88703 -8.60625 -8.32838 -7.23210 -5.98442 -4.03807 2.32670 3.01909 3.28096 3.36925 3.39309 4.42995 4.95337 5.05121 5.30625 5.34242 5.55260 5.65531 5.77419 5.92542 6.01116 6.14015 6.18023 6.29070 6.50519 6.54911 6.65391 6.82412 6.97591 7.00625 7.17221 7.23008 7.39902 7.73079 7.96975 8.13572 8.44598 8.99307 9.60683 11.07718 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.039235 B = 0.009230 C = 0.009157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.475290 B = 3032.990715 C = 3057.086786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.048 3.952 3 H 0.027 0.973 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.889 5.889 8 Si 0.885 3.115 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.286 1.286 12 C -0.075 4.075 13 H 0.052 0.948 14 C -0.112 4.112 15 C -0.126 4.126 16 C -0.117 4.117 17 C -0.109 4.109 18 S -0.285 6.285 19 C -0.031 4.031 20 H 0.005 0.995 21 H 0.029 0.971 22 H 0.076 0.924 23 H 0.258 0.742 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 -5.495 -8.815 10.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.028 3.972 3 H 0.045 0.955 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.713 3.287 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.095 4.095 13 H 0.071 0.929 14 C -0.150 4.150 15 C -0.163 4.163 16 C -0.156 4.156 17 C -0.258 4.258 18 S -0.057 6.057 19 C -0.178 4.178 20 H 0.024 0.976 21 H 0.048 0.952 22 H 0.095 0.905 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.989 -4.548 -9.284 10.761 hybrid contribution -0.200 -1.589 1.583 2.252 sum 2.789 -6.137 -7.700 10.234 Atomic orbital electron populations 1.21827 0.98768 0.99886 0.98729 1.18867 0.92574 0.95249 0.90533 0.95498 1.21212 1.30852 1.12086 0.90430 0.92472 1.24973 0.95168 0.94959 0.98903 1.69917 1.36887 1.22919 1.23067 0.86653 0.78634 0.79779 0.83634 1.19871 1.21135 1.21182 1.21223 0.92190 0.95712 1.00415 0.92940 1.21942 0.99347 0.94048 0.99632 1.21383 1.01090 0.98598 0.95274 1.21260 0.94973 1.01466 0.97907 1.22570 1.00306 0.98527 1.04383 1.86072 1.84772 1.17011 1.17828 1.23463 0.99504 1.05935 0.88866 0.97614 0.95179 0.90534 0.93187 0.92751 0.90641 0.92566 0.92581 0.89932 0.91800 0.89389 0.90590 0.90363 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.30 37.16 0.31 -2.85 16 2 C 0.05 1.13 1.89 -91.77 -0.17 0.96 16 3 H 0.03 0.71 7.85 -51.93 -0.41 0.30 16 4 C -0.51 -13.03 7.03 -34.44 -0.24 -13.27 16 5 H 0.06 1.45 6.59 -52.49 -0.35 1.10 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -24.97 11.40 55.43 0.63 -24.34 16 8 Si 0.88 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 C -0.08 -1.47 1.27 -90.89 -0.12 -1.59 16 13 H 0.05 1.03 6.81 -51.93 -0.35 0.68 16 14 C -0.11 -2.03 4.18 -25.58 -0.11 -2.13 16 15 C -0.13 -1.86 5.61 -28.25 -0.16 -2.02 16 16 C -0.12 -1.60 5.78 -28.72 -0.17 -1.76 16 17 C -0.11 -1.53 5.44 36.80 0.20 -1.33 16 18 S -0.28 -4.72 21.72 -107.50 -2.34 -7.06 16 19 C -0.03 -0.57 5.08 35.85 0.18 -0.39 16 20 H 0.00 0.11 8.13 -51.93 -0.42 -0.32 16 21 H 0.03 0.68 6.90 -51.93 -0.36 0.32 16 22 H 0.08 2.00 6.27 -51.93 -0.33 1.67 16 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.05 0.99 6.98 -51.93 -0.36 0.62 16 25 H 0.07 1.52 6.06 -51.93 -0.31 1.21 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.83 6.70 -51.93 -0.35 0.48 16 28 H 0.08 1.25 6.50 -51.93 -0.34 0.91 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.10 8.14 -48.46 -0.39 0.71 16 31 H 0.08 1.05 6.79 -48.46 -0.33 0.72 16 32 H 0.08 1.45 7.98 -51.93 -0.41 1.04 16 33 H 0.11 2.11 7.51 -51.93 -0.39 1.72 16 LS Contribution 257.67 15.07 3.88 3.88 Total: -1.00 -26.47 257.67 -8.29 -34.76 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -5.08 Total: -0.23 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -0.37 Total: -22.84 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.63 Total: -24.34 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -4.72 SS G_CDS: -2.34 Total: -7.06 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.47 -8.29 -34.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869283.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.078 kcal (2) G-P(sol) polarization free energy of solvation -26.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds