Wall clock time and date at job start Mon Mar 30 2020 02:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47268 * 2 1 4 4 C 1.50700 * 109.47345 * 120.00102 * 2 1 3 5 5 H 1.07993 * 120.00479 * 119.99378 * 4 2 1 6 6 C 1.37879 * 119.99577 * 299.99973 * 4 2 1 7 7 N 1.31522 * 120.00167 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47172 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46927 * 119.99881 * 8 6 4 11 11 H 1.48506 * 109.47077 * 239.99947 * 8 6 4 12 12 C 1.53005 * 109.46885 * 239.99882 * 2 1 3 13 13 H 1.08994 * 107.89440 * 56.62624 * 12 2 1 14 14 C 1.54969 * 108.03802 * 300.04319 * 12 2 1 15 15 C 1.53215 * 116.92565 * 192.03454 * 14 12 2 16 16 C 1.49716 * 110.25707 * 317.77669 * 15 14 12 17 17 C 1.52296 * 104.75111 * 99.49903 * 16 15 14 18 18 S 1.74435 * 114.79931 * 267.52589 * 17 16 15 19 19 C 1.50370 * 108.03700 * 173.16503 * 12 2 1 20 20 H 1.09004 * 109.46763 * 66.44603 * 1 2 3 21 21 H 1.08997 * 109.46836 * 186.44463 * 1 2 3 22 22 H 1.09000 * 109.46782 * 306.44666 * 1 2 3 23 23 H 0.96993 * 119.99671 * 180.02562 * 7 6 4 24 24 H 1.09002 * 107.95569 * 70.15840 * 14 12 2 25 25 H 1.09001 * 107.95965 * 313.91700 * 14 12 2 26 26 H 1.09001 * 109.33967 * 197.53382 * 15 14 12 27 27 H 1.08999 * 109.33500 * 78.01769 * 15 14 12 28 28 H 1.08996 * 110.37443 * 340.69133 * 16 15 14 29 29 H 1.09005 * 110.37262 * 218.30133 * 16 15 14 30 30 H 1.08999 * 108.41682 * 146.14443 * 17 16 15 31 31 H 1.09002 * 108.41700 * 28.90373 * 17 16 15 32 32 H 1.08999 * 109.52082 * 92.71476 * 19 12 2 33 33 H 1.08998 * 109.52284 * 332.53503 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.1465 -2.2869 3.6038 10 1 3.1467 -0.1872 4.8164 11 1 1.1661 -1.5866 4.8161 12 6 2.0400 -0.7213 -1.2493 13 1 1.6137 -0.2242 -2.1205 14 6 1.5044 -2.1751 -1.2162 15 6 2.1157 -3.1626 -2.2155 16 6 2.2743 -2.5132 -3.5551 17 6 3.7402 -2.1050 -3.6171 18 16 4.0712 -0.4811 -3.0728 19 6 3.5336 -0.5569 -1.3048 20 1 -0.3633 0.4107 -0.9421 21 1 -0.3633 -1.0212 0.1153 22 1 -0.3633 0.6105 0.8267 23 1 0.7096 1.1619 3.4843 24 1 0.4292 -2.1412 -1.3923 25 1 1.6648 -2.5697 -0.2129 26 1 1.4634 -4.0308 -2.3101 27 1 3.0917 -3.4852 -1.8529 28 1 1.6324 -1.6354 -3.6296 29 1 2.0438 -3.2223 -4.3503 30 1 4.0804 -2.1986 -4.6484 31 1 4.3168 -2.7979 -3.0043 32 1 4.0119 -1.4049 -0.8147 33 1 3.8176 0.3654 -0.7979 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259869283.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:29 Heat of formation + Delta-G solvation = -38.445297 kcal Electronic energy + Delta-G solvation = -13169.526302 eV Core-core repulsion = 11126.861810 eV Total energy + Delta-G solvation = -2042.664492 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.20645 -36.24366 -33.86726 -30.60004 -30.13461 -27.15341 -25.54885 -24.03657 -22.19549 -20.03386 -18.05474 -17.56753 -16.61683 -16.13851 -15.55032 -15.35453 -14.75921 -14.56049 -14.13080 -13.65568 -13.27612 -13.21874 -12.95353 -12.83083 -12.59835 -12.34893 -12.19130 -11.94806 -11.49416 -11.22940 -11.16507 -11.04415 -10.56072 -10.40681 -10.34914 -8.56265 -8.03784 -6.14435 0.99018 1.39915 1.43354 1.52429 1.72723 2.45488 3.25035 3.82858 3.87319 4.06652 4.22034 4.27609 4.42004 4.67719 4.69626 4.78926 4.95232 4.95844 5.01054 5.05779 5.17808 5.26950 5.35086 5.37650 5.43133 5.61818 5.66000 5.69923 5.99316 6.16060 6.42929 6.96643 7.52571 9.01662 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.039235 B = 0.009230 C = 0.009157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.475290 B = 3032.990715 C = 3057.086786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.044 3.956 3 H -0.008 1.008 4 C -0.506 4.506 5 H 0.060 0.940 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.944 3.056 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.285 1.285 12 C -0.062 4.062 13 H 0.052 0.948 14 C -0.106 4.106 15 C -0.119 4.119 16 C -0.112 4.112 17 C -0.108 4.108 18 S -0.287 6.287 19 C -0.031 4.031 20 H 0.023 0.977 21 H 0.032 0.968 22 H 0.046 0.954 23 H 0.257 0.743 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.164 -7.399 -10.197 12.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.024 3.976 3 H 0.011 0.989 4 C -0.544 4.544 5 H 0.078 0.922 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.771 3.229 9 H -0.189 1.189 10 H -0.213 1.213 11 H -0.212 1.212 12 C -0.082 4.082 13 H 0.071 0.929 14 C -0.144 4.144 15 C -0.157 4.157 16 C -0.151 4.151 17 C -0.256 4.256 18 S -0.059 6.059 19 C -0.178 4.178 20 H 0.042 0.958 21 H 0.051 0.949 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.566 -6.461 -10.675 12.978 hybrid contribution -0.378 -0.982 1.941 2.208 sum 3.188 -7.443 -8.734 11.910 Atomic orbital electron populations 1.21675 0.98644 0.99462 0.98452 1.18842 0.92700 0.93776 0.92276 0.98944 1.21484 1.30041 1.11771 0.91125 0.92235 1.25708 0.95679 0.95736 1.01785 1.70057 1.38314 1.24374 1.23431 0.85712 0.78026 0.78866 0.80296 1.18883 1.21274 1.21173 1.21057 0.92756 0.96488 0.97940 0.92935 1.21859 0.99448 0.93462 0.99601 1.21345 1.01360 0.98171 0.94808 1.21230 0.94265 1.01530 0.98110 1.22687 1.00910 0.96392 1.05631 1.86110 1.84642 1.19688 1.15437 1.23230 0.98770 1.04768 0.91039 0.95769 0.94891 0.93487 0.93420 0.93016 0.93024 0.90555 0.92301 0.91299 0.88648 0.87044 0.89884 0.90498 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.30 71.98 0.60 -5.34 16 2 C 0.04 2.13 1.89 -11.54 -0.02 2.11 16 3 H -0.01 -0.41 7.85 -2.39 -0.02 -0.43 16 4 C -0.51 -26.31 7.03 25.60 0.18 -26.13 16 5 H 0.06 3.02 6.59 -2.91 -0.02 3.00 16 6 C 0.01 0.47 5.30 84.65 0.45 0.92 16 7 N -0.92 -53.11 11.40 21.45 0.24 -52.86 16 8 Si 0.94 43.12 29.54 68.60 2.03 45.15 16 9 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 12 C -0.06 -2.42 1.27 -10.97 -0.01 -2.43 16 13 H 0.05 2.03 6.81 -2.39 -0.02 2.01 16 14 C -0.11 -3.68 4.18 31.34 0.13 -3.55 16 15 C -0.12 -3.15 5.61 29.61 0.17 -2.98 16 16 C -0.11 -2.64 5.78 29.31 0.17 -2.47 16 17 C -0.11 -2.63 5.44 71.75 0.39 -2.24 16 18 S -0.29 -9.00 21.72 -56.49 -1.23 -10.23 16 19 C -0.03 -1.14 5.08 71.13 0.36 -0.77 16 20 H 0.02 1.01 8.13 -2.38 -0.02 0.99 16 21 H 0.03 1.50 6.90 -2.39 -0.02 1.49 16 22 H 0.05 2.52 6.27 -2.39 -0.01 2.50 16 23 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 24 H 0.05 1.80 6.98 -2.39 -0.02 1.78 16 25 H 0.05 2.03 6.06 -2.39 -0.01 2.02 16 26 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.06 1.54 6.70 -2.39 -0.02 1.53 16 28 H 0.07 1.86 6.50 -2.39 -0.02 1.85 16 29 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.11 2.29 8.14 -4.59 -0.04 2.25 16 31 H 0.08 1.98 6.79 -4.59 -0.03 1.95 16 32 H 0.08 2.81 7.98 -2.39 -0.02 2.79 16 33 H 0.08 3.45 7.51 -2.39 -0.02 3.43 16 Total: -1.00 -56.80 257.67 4.49 -52.31 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 1.04 Total: 8.52 kcal Atomic # 6 Polarization: -45.29 SS G_CDS: 2.41 Total: -42.88 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.24 Total: -52.86 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.23 Total: -10.23 kcal Total: -56.80 4.49 -52.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869283.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.866 kcal (2) G-P(sol) polarization free energy of solvation -56.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds