Wall clock time and date at job start Mon Mar 30 2020 02:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47339 * 2 1 4 4 C 1.50694 * 109.47174 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 240.00081 * 4 2 1 6 6 C 1.37885 * 119.99902 * 59.99918 * 4 2 1 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 2 9 9 H 1.48498 * 109.46909 * 90.00086 * 8 6 4 10 10 H 1.48497 * 109.46701 * 209.99996 * 8 6 4 11 11 H 1.48500 * 109.46867 * 330.00101 * 8 6 4 12 12 C 1.53001 * 109.46989 * 119.99703 * 2 1 3 13 13 H 1.09004 * 109.30652 * 60.40063 * 12 2 1 14 14 C 1.44822 * 109.30422 * 179.97438 * 12 2 1 15 15 C 1.53075 * 115.41264 * 184.36988 * 14 12 2 16 16 C 1.51418 * 105.01041 * 265.41832 * 15 14 12 17 17 C 1.54626 * 109.12409 * 105.44021 * 16 15 14 18 18 S 1.82332 * 110.93602 * 320.75023 * 17 16 15 19 19 C 1.55234 * 109.30850 * 300.99729 * 12 2 1 20 20 H 1.08998 * 109.47223 * 299.99995 * 1 2 3 21 21 H 1.08995 * 109.47095 * 60.00224 * 1 2 3 22 22 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 23 23 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 24 24 H 1.09003 * 108.29401 * 305.90777 * 14 12 2 25 25 H 1.08999 * 108.29539 * 62.83181 * 14 12 2 26 26 H 1.08993 * 110.33053 * 24.29130 * 15 14 12 27 27 H 1.09002 * 110.32906 * 146.39423 * 15 14 12 28 28 H 1.08998 * 109.52984 * 225.33371 * 16 15 14 29 29 H 1.08998 * 109.52996 * 345.54876 * 16 15 14 30 30 H 1.08996 * 109.18627 * 81.12909 * 17 16 15 31 31 H 1.09000 * 109.18401 * 200.42570 * 17 16 15 32 32 H 1.09004 * 109.43394 * 286.49930 * 19 12 2 33 33 H 1.08999 * 109.43845 * 46.36619 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3282 -1.1156 -4.0079 9 1 1.3553 -2.1611 -4.4148 10 1 2.4907 -0.1345 -5.1107 11 1 3.6387 -1.7477 -3.7105 12 6 2.0400 -0.7212 1.2493 13 1 1.6810 -1.7504 1.2430 14 6 3.4882 -0.7196 1.2454 15 6 4.1490 -1.4992 2.3850 16 6 4.4246 -0.4671 3.4580 17 6 3.4056 -0.6464 4.6071 18 16 1.7494 -1.0396 3.9537 19 6 1.4997 -0.0013 2.5140 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7089 1.1613 -3.4844 24 1 3.8282 -1.1419 0.2997 25 1 3.8294 0.3144 1.2954 26 1 3.4720 -2.2657 2.7619 27 1 5.0800 -1.9521 2.0440 28 1 5.4354 -0.6025 3.8429 29 1 4.3254 0.5329 3.0358 30 1 3.7365 -1.4572 5.2560 31 1 3.3520 0.2759 5.1855 32 1 2.0313 0.9406 2.6502 33 1 0.4353 0.1984 2.3909 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259869287.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:31 Heat of formation + Delta-G solvation = -35.477344 kcal Electronic energy + Delta-G solvation = -13054.124980 eV Core-core repulsion = 11011.589188 eV Total energy + Delta-G solvation = -2042.535792 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.45510 -36.10384 -33.99860 -30.98959 -29.54569 -27.42708 -25.85590 -23.34894 -21.73481 -20.75452 -18.51588 -17.44461 -16.55550 -16.21967 -15.40457 -15.26591 -14.72514 -14.61550 -14.48355 -13.70825 -13.27495 -13.05517 -12.88776 -12.64736 -12.52577 -12.34104 -12.18097 -11.99536 -11.75193 -11.40642 -11.17037 -10.98188 -10.61784 -10.49180 -10.32231 -8.44382 -8.05226 -6.18660 0.84851 1.40575 1.41823 1.51081 1.84161 2.44181 3.20945 3.79963 3.88603 4.01084 4.15981 4.22869 4.40385 4.59717 4.72137 4.74754 4.83208 4.88410 5.03224 5.04067 5.15636 5.25315 5.33736 5.44011 5.46058 5.60490 5.64735 5.72433 6.01141 6.18744 6.41168 6.91909 7.48623 8.98117 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.046870 B = 0.008758 C = 0.007832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.251120 B = 3196.461770 C = 3574.266570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.049 3.951 3 H -0.005 1.005 4 C -0.519 4.519 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.920 5.920 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.268 1.268 12 C -0.054 4.054 13 H 0.053 0.947 14 C -0.110 4.110 15 C -0.128 4.128 16 C -0.120 4.120 17 C -0.072 4.072 18 S -0.295 6.295 19 C -0.075 4.075 20 H 0.032 0.968 21 H 0.052 0.948 22 H 0.023 0.977 23 H 0.258 0.742 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.645 -2.504 11.873 13.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.029 3.971 3 H 0.013 0.987 4 C -0.557 4.557 5 H 0.074 0.926 6 C -0.189 4.189 7 N -0.560 5.560 8 Si 0.775 3.225 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.075 4.075 13 H 0.071 0.929 14 C -0.148 4.148 15 C -0.166 4.166 16 C -0.159 4.159 17 C -0.220 4.220 18 S -0.067 6.067 19 C -0.223 4.223 20 H 0.051 0.949 21 H 0.071 0.929 22 H 0.042 0.958 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.136 0.864 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.878 -3.078 12.187 13.483 hybrid contribution 0.769 0.789 -1.798 2.109 sum 5.647 -2.289 10.390 12.044 Atomic orbital electron populations 1.21736 0.98798 0.98629 0.99633 1.18680 0.92570 0.94101 0.91727 0.98677 1.21532 1.30468 1.12103 0.91618 0.92648 1.25721 0.95550 0.95759 1.01827 1.70026 1.38084 1.24236 1.23661 0.85698 0.78962 0.78336 0.79534 1.20384 1.21150 1.19208 1.20004 0.95975 0.98506 0.92983 0.92871 1.20288 0.95543 0.99520 0.99401 1.21701 1.00926 0.98509 0.95430 1.22029 0.99619 0.99130 0.95103 1.24033 0.91787 1.06144 0.99995 1.85951 1.24948 1.60381 1.35391 1.23688 1.04820 0.99454 0.94323 0.94878 0.92900 0.95812 0.93236 0.93263 0.93867 0.89974 0.90891 0.88725 0.92338 0.86425 0.89176 0.90528 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 8.64 71.98 0.62 -5.73 16 2 C 0.05 2.44 1.87 -11.54 -0.02 2.42 16 3 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 4 C -0.52 -28.24 7.71 25.60 0.20 -28.05 16 5 H 0.06 2.97 6.63 -2.91 -0.02 2.95 16 6 C 0.01 0.52 5.30 84.66 0.45 0.97 16 7 N -0.92 -53.56 11.32 21.45 0.24 -53.32 16 8 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 12 C -0.05 -2.18 1.44 -12.50 -0.02 -2.20 16 13 H 0.05 2.28 8.09 -2.38 -0.02 2.26 16 14 C -0.11 -4.06 4.10 28.14 0.12 -3.94 16 15 C -0.13 -3.61 5.78 30.10 0.17 -3.44 16 16 C -0.12 -2.77 5.69 30.63 0.17 -2.60 16 17 C -0.07 -1.58 6.60 72.54 0.48 -1.10 16 18 S -0.30 -8.80 20.08 -56.49 -1.13 -9.93 16 19 C -0.07 -2.60 5.17 72.75 0.38 -2.22 16 20 H 0.03 1.41 6.12 -2.39 -0.01 1.39 16 21 H 0.05 2.88 6.07 -2.39 -0.01 2.86 16 22 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 24 H 0.05 2.05 6.11 -2.39 -0.01 2.04 16 25 H 0.04 1.61 6.70 -2.39 -0.02 1.59 16 26 H 0.08 2.43 6.23 -2.39 -0.01 2.41 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.49 6.55 -2.39 -0.02 1.47 16 30 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 32 H 0.08 2.56 7.89 -2.50 -0.02 2.55 16 33 H 0.10 3.50 5.81 -2.50 -0.01 3.48 16 Total: -1.00 -58.73 257.94 4.75 -53.97 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.07 Total: 9.27 kcal Atomic # 6 Polarization: -48.43 SS G_CDS: 2.55 Total: -45.89 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.24 Total: -53.32 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.13 Total: -9.93 kcal Total: -58.73 4.75 -53.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869287.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.496 kcal (2) G-P(sol) polarization free energy of solvation -58.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds