Wall clock time and date at job start Mon Mar 30 2020 02:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34637 * 117.00138 * 2 1 4 4 O 1.21511 * 120.00104 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99966 * 180.02562 * 3 2 1 6 6 C 1.47078 * 120.88357 * 359.97438 * 5 3 2 7 7 C 1.53240 * 108.52191 * 231.21123 * 6 5 3 8 8 N 1.46905 * 109.33578 * 306.16809 * 7 6 5 9 9 C 1.47324 * 111.36685 * 63.12743 * 8 7 6 10 10 H 1.08999 * 109.46701 * 56.79394 * 9 8 7 11 11 C 1.50695 * 109.75313 * 177.01901 * 9 8 7 12 12 H 1.07998 * 120.00368 * 119.73700 * 11 9 8 13 13 C 1.37879 * 119.99790 * 299.73995 * 11 9 8 14 14 N 1.31521 * 119.99867 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00311 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46992 * 59.99904 * 15 13 11 17 17 H 1.48498 * 109.47290 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47076 * 300.00223 * 15 13 11 19 19 C 1.47082 * 120.87877 * 180.02562 * 5 3 2 20 20 H 1.09002 * 109.47069 * 59.99802 * 1 2 3 21 21 H 1.08998 * 109.47030 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47220 * 300.00376 * 1 2 3 23 23 H 1.09004 * 109.62602 * 350.91757 * 6 5 3 24 24 H 1.08997 * 109.62550 * 111.30095 * 6 5 3 25 25 H 1.08995 * 109.49181 * 66.12915 * 7 6 5 26 26 H 1.09001 * 109.49150 * 186.18356 * 7 6 5 27 27 H 1.00900 * 110.99249 * 187.25388 * 8 7 6 28 28 H 0.96998 * 119.99917 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.62865 * 248.50136 * 19 5 3 30 30 H 1.09005 * 109.62997 * 8.88813 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2291 0.0491 -0.0005 7 6 5.2566 0.1527 1.1316 8 7 6.0094 1.4064 0.9921 9 6 5.1292 2.5795 1.1321 10 1 4.6157 2.5357 2.0925 11 6 5.9478 3.8424 1.0561 12 1 5.7527 4.5664 0.2788 13 6 6.9458 4.0736 1.9788 14 7 7.1837 3.1917 2.9250 15 14 7.9611 5.6388 1.8843 16 1 7.0676 6.8172 2.0193 17 1 8.9614 5.6470 2.9817 18 1 8.6616 5.6961 0.5761 19 6 4.0970 2.5702 0.0000 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 3.5916 -0.8200 0.1620 24 1 4.7425 -0.0472 -0.9572 25 1 4.7416 0.1426 2.0922 26 1 5.9432 -0.6922 1.0781 27 1 6.7710 1.4463 1.6528 28 1 7.8856 3.3545 3.5744 29 1 4.6004 2.7185 -0.9553 30 1 3.3717 3.3681 0.1595 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259887306.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:30 Heat of formation + Delta-G solvation = -73.631532 kcal Electronic energy + Delta-G solvation = -14829.758017 eV Core-core repulsion = 12239.274521 eV Total energy + Delta-G solvation = -2590.483496 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.11073 -37.56830 -35.80802 -33.69023 -31.96328 -30.26257 -27.65708 -25.93986 -24.84056 -22.11388 -21.03737 -19.06144 -17.65655 -16.74077 -16.32599 -16.05553 -14.98420 -14.33514 -13.92114 -13.78354 -13.64332 -13.40636 -12.97314 -12.13725 -12.09857 -11.85261 -11.23144 -10.98855 -10.86531 -10.64902 -10.51787 -10.24345 -10.09651 -9.81205 -9.29593 -8.67763 -8.19971 -7.01874 -6.18318 -4.22795 2.59999 3.24602 3.29164 3.33137 3.36727 4.31224 4.38842 5.05351 5.25425 5.32926 5.49040 5.57044 5.66012 5.83445 5.97006 6.18193 6.28613 6.48906 6.51654 6.55630 6.76320 6.87340 7.38237 7.79359 7.88913 8.01698 8.50055 8.70868 8.85511 8.96727 9.45470 10.91939 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.052868 B = 0.008067 C = 0.007366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.495962 B = 3470.173232 C = 3800.391975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.377 6.377 3 C 0.642 3.358 4 O -0.583 6.583 5 N -0.587 5.587 6 C 0.119 3.881 7 C 0.040 3.960 8 N -0.685 5.685 9 C 0.206 3.794 10 H 0.003 0.997 11 C -0.508 4.508 12 H 0.065 0.935 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.904 3.096 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.137 3.863 20 H 0.059 0.941 21 H 0.097 0.903 22 H 0.060 0.940 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.019 0.981 26 H 0.068 0.932 27 H 0.367 0.633 28 H 0.266 0.734 29 H 0.068 0.932 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.574 -7.451 -4.068 10.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.291 6.291 3 C 0.396 3.604 4 O -0.473 6.473 5 N -0.326 5.326 6 C -0.004 4.004 7 C -0.092 4.092 8 N -0.323 5.323 9 C 0.098 3.902 10 H 0.020 0.980 11 C -0.548 4.548 12 H 0.083 0.917 13 C -0.134 4.134 14 N -0.540 5.540 15 Si 0.732 3.268 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.200 1.200 19 C 0.017 3.983 20 H 0.078 0.922 21 H 0.115 0.885 22 H 0.078 0.922 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.037 0.963 26 H 0.087 0.913 27 H 0.191 0.809 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.743 -7.198 -4.588 10.878 hybrid contribution 0.284 0.705 1.037 1.286 sum -6.460 -6.493 -3.551 9.823 Atomic orbital electron populations 1.23076 0.75435 1.02775 1.02439 1.86220 1.23418 1.31840 1.87590 1.18136 0.83589 0.81769 0.76932 1.90944 1.64358 1.34833 1.57139 1.47320 1.01157 1.10022 1.74134 1.21822 0.92819 0.85813 0.99986 1.22183 0.95683 0.95876 0.95409 1.60956 1.13255 0.99624 1.58475 1.19431 0.89762 0.89722 0.91297 0.97969 1.20995 1.17426 1.02753 1.13588 0.91710 1.24998 0.96887 0.97047 0.94473 1.69675 1.32431 1.35608 1.16324 0.86455 0.79693 0.82925 0.77733 1.20156 1.21272 1.19976 1.22150 0.94200 0.80872 1.01072 0.92225 0.88499 0.92170 0.90249 0.91154 0.96269 0.91337 0.80899 0.92384 0.91367 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.70 10.56 101.05 1.07 1.77 16 2 O -0.38 -6.21 9.25 -40.32 -0.37 -6.58 16 3 C 0.64 12.88 8.44 54.05 0.46 13.33 16 4 O -0.58 -13.13 15.58 -19.28 -0.30 -13.43 16 5 N -0.59 -11.90 3.01 -178.27 -0.54 -12.43 16 6 C 0.12 2.07 6.61 -3.60 -0.02 2.05 16 7 C 0.04 0.77 6.70 -3.70 -0.02 0.74 16 8 N -0.69 -16.06 6.49 -107.40 -0.70 -16.76 16 9 C 0.21 5.21 2.54 -68.53 -0.17 5.03 16 10 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 11 C -0.51 -13.71 8.77 -34.44 -0.30 -14.02 16 12 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 13 C 0.07 1.82 5.32 -17.82 -0.09 1.73 16 14 N -0.90 -24.78 11.52 55.43 0.64 -24.14 16 15 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 19 C 0.14 3.09 5.81 -3.62 -0.02 3.07 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.08 1.20 6.98 -51.93 -0.36 0.84 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.37 9.30 6.69 -39.29 -0.26 9.03 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.08 1.95 7.06 -51.93 -0.37 1.59 16 LS Contribution 253.38 15.07 3.82 3.82 Total: -1.00 -29.91 253.38 -5.50 -35.41 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -3.91 Total: 4.61 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 0.88 Total: 13.71 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.60 Total: -53.33 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.67 Total: -20.01 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.91 -5.50 -35.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887306.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.218 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds