Wall clock time and date at job start Mon Mar 30 2020 02:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34637 * 117.00138 * 2 1 4 4 O 1.21511 * 120.00104 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99966 * 180.02562 * 3 2 1 6 6 C 1.47078 * 120.88357 * 359.97438 * 5 3 2 7 7 C 1.53240 * 108.52191 * 231.21123 * 6 5 3 8 8 N 1.46905 * 109.33578 * 306.16809 * 7 6 5 9 9 C 1.47324 * 111.36685 * 63.12743 * 8 7 6 10 10 H 1.08999 * 109.46701 * 56.79394 * 9 8 7 11 11 C 1.50695 * 109.75313 * 177.01901 * 9 8 7 12 12 H 1.07998 * 120.00368 * 119.73700 * 11 9 8 13 13 C 1.37879 * 119.99790 * 299.73995 * 11 9 8 14 14 N 1.31521 * 119.99867 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00311 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46992 * 59.99904 * 15 13 11 17 17 H 1.48498 * 109.47290 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47076 * 300.00223 * 15 13 11 19 19 C 1.47082 * 120.87877 * 180.02562 * 5 3 2 20 20 H 1.09002 * 109.47069 * 59.99802 * 1 2 3 21 21 H 1.08998 * 109.47030 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47220 * 300.00376 * 1 2 3 23 23 H 1.09004 * 109.62602 * 350.91757 * 6 5 3 24 24 H 1.08997 * 109.62550 * 111.30095 * 6 5 3 25 25 H 1.08995 * 109.49181 * 66.12915 * 7 6 5 26 26 H 1.09001 * 109.49150 * 186.18356 * 7 6 5 27 27 H 1.00900 * 110.99249 * 187.25388 * 8 7 6 28 28 H 0.96998 * 119.99917 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.62865 * 248.50136 * 19 5 3 30 30 H 1.09005 * 109.62997 * 8.88813 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2291 0.0491 -0.0005 7 6 5.2566 0.1527 1.1316 8 7 6.0094 1.4064 0.9921 9 6 5.1292 2.5795 1.1321 10 1 4.6157 2.5357 2.0925 11 6 5.9478 3.8424 1.0561 12 1 5.7527 4.5664 0.2788 13 6 6.9458 4.0736 1.9788 14 7 7.1837 3.1917 2.9250 15 14 7.9611 5.6388 1.8843 16 1 7.0676 6.8172 2.0193 17 1 8.9614 5.6470 2.9817 18 1 8.6616 5.6961 0.5761 19 6 4.0970 2.5702 0.0000 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 3.5916 -0.8200 0.1620 24 1 4.7425 -0.0472 -0.9572 25 1 4.7416 0.1426 2.0922 26 1 5.9432 -0.6922 1.0781 27 1 6.7710 1.4463 1.6528 28 1 7.8856 3.3545 3.5744 29 1 4.6004 2.7185 -0.9553 30 1 3.3717 3.3681 0.1595 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259887306.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:30 Heat of formation + Delta-G solvation = -95.925277 kcal Electronic energy + Delta-G solvation = -14830.724746 eV Core-core repulsion = 12239.274521 eV Total energy + Delta-G solvation = -2591.450225 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.62676 -39.18178 -37.32771 -35.53623 -33.78892 -32.06677 -28.85655 -27.70890 -26.55624 -23.80901 -22.66831 -20.71474 -19.29161 -18.42825 -17.99334 -17.53042 -16.86885 -15.98099 -15.61013 -15.41930 -15.19890 -14.84172 -14.59795 -13.89751 -13.69170 -13.03648 -12.86501 -12.79952 -12.66951 -12.37874 -12.06571 -11.83926 -11.79930 -11.52479 -11.24119 -10.70408 -9.86164 -8.90240 -8.21904 -6.34602 1.16296 1.46341 1.47623 1.55611 1.68436 2.42550 2.96235 3.04775 3.86963 4.11539 4.30699 4.34162 4.36840 4.40886 4.47380 4.60866 4.66975 4.76193 4.91271 4.98122 5.23809 5.25631 5.37306 5.72480 6.02950 6.32931 6.54313 6.83030 7.01222 7.17556 7.37572 8.87235 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.052868 B = 0.008067 C = 0.007366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.495962 B = 3470.173232 C = 3800.391975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.370 6.370 3 C 0.642 3.358 4 O -0.614 6.614 5 N -0.594 5.594 6 C 0.122 3.878 7 C 0.038 3.962 8 N -0.688 5.688 9 C 0.211 3.789 10 H -0.043 1.043 11 C -0.535 4.535 12 H 0.064 0.936 13 C 0.023 3.977 14 N -0.923 5.923 15 Si 0.969 3.031 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.267 1.267 19 C 0.150 3.850 20 H 0.061 0.939 21 H 0.143 0.857 22 H 0.054 0.946 23 H 0.109 0.891 24 H 0.087 0.913 25 H 0.002 0.998 26 H 0.101 0.899 27 H 0.354 0.646 28 H 0.268 0.732 29 H 0.075 0.925 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.623 -8.472 -4.912 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.283 6.283 3 C 0.396 3.604 4 O -0.507 6.507 5 N -0.333 5.333 6 C 0.001 3.999 7 C -0.093 4.093 8 N -0.324 5.324 9 C 0.102 3.898 10 H -0.026 1.026 11 C -0.573 4.573 12 H 0.083 0.917 13 C -0.176 4.176 14 N -0.563 5.563 15 Si 0.794 3.206 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.192 1.192 19 C 0.029 3.971 20 H 0.080 0.920 21 H 0.161 0.839 22 H 0.073 0.927 23 H 0.127 0.873 24 H 0.106 0.894 25 H 0.020 0.980 26 H 0.119 0.881 27 H 0.176 0.824 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.814 -8.265 -5.447 12.017 hybrid contribution 0.212 0.930 1.327 1.634 sum -6.603 -7.335 -4.121 10.695 Atomic orbital electron populations 1.23518 0.72863 1.05761 1.02379 1.86226 1.25773 1.29401 1.86947 1.18223 0.83423 0.82418 0.76291 1.90919 1.65067 1.36274 1.58418 1.47315 1.01791 1.10027 1.74204 1.21995 0.92526 0.85536 0.99892 1.22359 0.96448 0.94951 0.95512 1.60916 1.13024 1.00690 1.57756 1.19250 0.90079 0.90368 0.90096 1.02573 1.21325 1.18134 1.03814 1.14060 0.91742 1.25773 0.97796 1.00047 0.94017 1.69786 1.32784 1.37053 1.16708 0.85442 0.78093 0.79091 0.77958 1.19939 1.20776 1.19231 1.21759 0.93272 0.81988 1.00110 0.91974 0.83937 0.92668 0.87276 0.89440 0.97954 0.88053 0.82418 0.92261 0.90680 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.05 10.56 113.37 1.20 2.25 16 2 O -0.37 -11.33 9.25 -55.47 -0.51 -11.84 16 3 C 0.64 25.14 8.44 129.79 1.10 26.23 16 4 O -0.61 -27.67 15.58 19.81 0.31 -27.36 16 5 N -0.59 -23.59 3.01 -948.34 -2.86 -26.44 16 6 C 0.12 3.98 6.61 86.35 0.57 4.55 16 7 C 0.04 1.42 6.70 86.38 0.58 1.99 16 8 N -0.69 -32.28 6.49 -493.71 -3.21 -35.49 16 9 C 0.21 10.91 2.54 44.15 0.11 11.02 16 10 H -0.04 -2.57 8.14 -2.39 -0.02 -2.59 16 11 C -0.53 -29.31 8.77 25.60 0.22 -29.08 16 12 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 13 C 0.02 1.26 5.32 84.65 0.45 1.71 16 14 N -0.92 -51.42 11.52 21.45 0.25 -51.17 16 15 Si 0.97 42.71 29.54 68.60 2.03 44.74 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 19 C 0.15 6.83 5.81 86.34 0.50 7.33 16 20 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 21 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 23 H 0.11 2.93 6.98 -2.38 -0.02 2.91 16 24 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 26 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 27 H 0.35 18.11 6.69 -89.69 -0.60 17.52 16 28 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 30 H 0.07 3.24 7.06 -2.38 -0.02 3.23 16 Total: -1.00 -65.00 253.38 1.28 -63.72 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.54 Total: 17.84 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: 4.73 Total: 26.01 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -5.81 Total: -113.11 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.20 Total: -39.20 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -65.00 1.28 -63.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887306.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.206 kcal (2) G-P(sol) polarization free energy of solvation -64.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds