Wall clock time and date at job start Mon Mar 30 2020 02:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34638 * 116.99976 * 2 1 4 4 O 1.21511 * 119.99767 * 0.02562 * 3 2 1 5 5 N 1.34771 * 120.00154 * 180.02562 * 3 2 1 6 6 C 1.47425 * 125.64767 * 359.69215 * 5 3 2 7 7 C 1.54910 * 104.83231 * 156.13676 * 6 5 3 8 8 C 1.55160 * 101.58122 * 37.00939 * 7 6 5 9 9 H 1.09003 * 110.87062 * 82.93498 * 8 7 6 10 10 N 1.46502 * 110.72023 * 206.13218 * 8 7 6 11 11 C 1.36930 * 120.00089 * 199.97605 * 10 8 7 12 12 H 1.08003 * 120.00345 * 0.02562 * 11 10 8 13 13 C 1.38817 * 120.00051 * 179.97438 * 11 10 8 14 14 N 1.31617 * 119.99647 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00024 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46840 * 90.00438 * 15 13 11 17 17 H 1.48493 * 109.47289 * 210.00231 * 15 13 11 18 18 H 1.48505 * 109.47140 * 330.00405 * 15 13 11 19 19 C 1.47026 * 125.65100 * 180.02562 * 5 3 2 20 20 H 1.09004 * 109.46806 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46709 * 299.99382 * 1 2 3 22 22 H 1.08993 * 109.47851 * 59.99727 * 1 2 3 23 23 H 1.09001 * 110.36478 * 274.97629 * 6 5 3 24 24 H 1.08998 * 110.36859 * 37.30006 * 6 5 3 25 25 H 1.08991 * 111.00552 * 278.93287 * 7 6 5 26 26 H 1.09002 * 111.00267 * 155.08153 * 7 6 5 27 27 H 0.96997 * 119.99518 * 19.97438 * 10 8 7 28 28 H 0.97002 * 119.99594 * 179.97438 * 14 13 11 29 29 H 1.09004 * 109.87531 * 300.21113 * 19 5 3 30 30 H 1.09000 * 109.87938 * 61.37366 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.3299 0.1189 0.0053 7 6 5.6470 0.6613 -0.6035 8 6 5.6901 2.0991 -0.0217 9 1 6.1041 2.0977 0.9867 10 7 6.4600 2.9887 -0.8947 11 6 6.9691 4.1600 -0.4011 12 1 6.8036 4.4280 0.6320 13 6 7.6991 5.0027 -1.2282 14 7 7.9013 4.6759 -2.4870 15 14 8.3931 6.6010 -0.5550 16 1 9.7549 6.3602 -0.0139 17 1 8.4641 7.6075 -1.6444 18 1 7.5119 7.1057 0.5286 19 6 4.2023 2.5082 -0.0001 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 4.4977 -0.2275 1.0251 24 1 3.9319 -0.6883 -0.6097 25 1 5.5950 0.6817 -1.6919 26 1 6.5031 0.0773 -0.2657 27 1 6.6090 2.7478 -1.8224 28 1 8.4111 5.2649 -3.0651 29 1 3.9675 3.0990 -0.8855 30 1 3.9891 3.0846 0.9002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259897251.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:02 Heat of formation + Delta-G solvation = -61.324829 kcal Electronic energy + Delta-G solvation = -14367.133718 eV Core-core repulsion = 11777.183881 eV Total energy + Delta-G solvation = -2589.949837 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.24447 -38.05504 -35.96239 -34.16956 -31.59776 -29.67797 -28.12981 -26.93249 -24.06460 -22.62492 -20.69015 -19.76603 -17.95854 -17.13298 -16.76305 -16.50821 -15.33927 -14.53203 -14.19103 -13.61092 -13.38697 -13.24090 -12.78503 -12.68596 -12.06902 -11.81816 -11.59452 -11.17506 -10.84671 -10.77125 -10.68080 -10.33378 -10.30610 -10.06162 -9.77775 -9.02893 -8.42163 -7.11413 -5.85191 -3.16291 2.33699 3.05336 3.40990 3.46792 3.48325 4.18565 4.53494 4.95631 5.13846 5.18500 5.20576 5.31101 5.44874 5.55923 5.65761 5.76929 5.93301 6.09214 6.26561 6.34507 6.35538 6.47688 6.65435 6.85558 7.64274 7.74428 8.32046 8.50604 9.44334 9.96897 10.31796 11.36812 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055059 B = 0.006494 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.421875 B = 4310.447144 C = 4581.160293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.375 6.375 3 C 0.656 3.344 4 O -0.577 6.577 5 N -0.597 5.597 6 C 0.107 3.893 7 C -0.141 4.141 8 C 0.172 3.828 9 H 0.069 0.931 10 N -0.711 5.711 11 C -0.251 4.251 12 H 0.074 0.926 13 C -0.008 4.008 14 N -0.930 5.930 15 Si 0.909 3.091 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.280 1.280 19 C 0.099 3.901 20 H 0.098 0.902 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.388 0.612 28 H 0.257 0.743 29 H 0.075 0.925 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.988 -11.311 4.803 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.289 6.289 3 C 0.410 3.590 4 O -0.466 6.466 5 N -0.338 5.338 6 C -0.016 4.016 7 C -0.179 4.179 8 C 0.059 3.941 9 H 0.087 0.913 10 N -0.351 5.351 11 C -0.382 4.382 12 H 0.092 0.908 13 C -0.204 4.204 14 N -0.577 5.577 15 Si 0.740 3.260 16 H -0.216 1.216 17 H -0.217 1.217 18 H -0.206 1.206 19 C -0.025 4.025 20 H 0.117 0.883 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.222 0.778 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.250 -10.848 4.877 15.067 hybrid contribution 0.161 0.907 -0.016 0.922 sum -9.089 -9.940 4.860 14.320 Atomic orbital electron populations 1.23115 0.75090 1.02971 1.02567 1.86234 1.23622 1.31539 1.87469 1.17690 0.82358 0.81915 0.76996 1.90984 1.63999 1.35001 1.56660 1.47310 1.01172 1.10492 1.74785 1.22304 0.89701 0.88660 1.00899 1.23073 0.95785 0.97638 1.01432 1.21234 0.88417 0.88809 0.95606 0.91287 1.42386 1.60564 1.21479 1.10692 1.19272 1.27009 0.96353 0.95543 0.90833 1.24780 1.00786 0.99127 0.95736 1.69662 1.44771 1.38337 1.04916 0.86161 0.78963 0.83141 0.77732 1.21560 1.21689 1.20583 1.23367 0.92688 0.84132 1.02311 0.88316 0.92113 0.92054 0.91408 0.90717 0.90393 0.89760 0.77780 0.93301 0.90651 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 10.56 101.05 1.07 1.68 16 2 O -0.37 -5.49 10.10 -40.32 -0.41 -5.90 16 3 C 0.66 11.79 8.62 54.05 0.47 12.26 16 4 O -0.58 -12.13 16.46 -19.28 -0.32 -12.45 16 5 N -0.60 -10.25 3.33 -176.30 -0.59 -10.84 16 6 C 0.11 1.46 6.92 -2.53 -0.02 1.45 16 7 C -0.14 -2.11 6.69 -24.58 -0.16 -2.27 16 8 C 0.17 3.25 3.59 -66.10 -0.24 3.02 16 9 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 10 N -0.71 -17.14 5.18 -51.65 -0.27 -17.41 16 11 C -0.25 -6.76 9.98 -15.06 -0.15 -6.91 16 12 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 13 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 14 N -0.93 -27.49 13.06 55.49 0.72 -26.76 16 15 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 19 C 0.10 1.91 6.62 -3.07 -0.02 1.89 16 20 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 25 H 0.08 1.22 8.00 -51.93 -0.42 0.81 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.39 9.91 7.71 -40.82 -0.31 9.60 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.08 1.65 8.03 -51.93 -0.42 1.24 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 262.37 15.07 3.95 3.95 Total: -1.00 -31.85 262.37 -5.14 -36.99 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -4.07 Total: 4.61 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 0.85 Total: 10.80 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.13 Total: -55.00 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.72 Total: -18.35 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.85 -5.14 -36.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259897251.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.334 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds