Wall clock time and date at job start Mon Mar 30 2020 02:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34638 * 116.99976 * 2 1 4 4 O 1.21511 * 119.99767 * 0.02562 * 3 2 1 5 5 N 1.34771 * 120.00154 * 180.02562 * 3 2 1 6 6 C 1.47425 * 125.64767 * 359.69215 * 5 3 2 7 7 C 1.54910 * 104.83231 * 156.13676 * 6 5 3 8 8 C 1.55160 * 101.58122 * 37.00939 * 7 6 5 9 9 H 1.09003 * 110.87062 * 82.93498 * 8 7 6 10 10 N 1.46502 * 110.72023 * 206.13218 * 8 7 6 11 11 C 1.36930 * 120.00089 * 199.97605 * 10 8 7 12 12 H 1.08003 * 120.00345 * 0.02562 * 11 10 8 13 13 C 1.38817 * 120.00051 * 179.97438 * 11 10 8 14 14 N 1.31617 * 119.99647 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00024 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46840 * 90.00438 * 15 13 11 17 17 H 1.48493 * 109.47289 * 210.00231 * 15 13 11 18 18 H 1.48505 * 109.47140 * 330.00405 * 15 13 11 19 19 C 1.47026 * 125.65100 * 180.02562 * 5 3 2 20 20 H 1.09004 * 109.46806 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46709 * 299.99382 * 1 2 3 22 22 H 1.08993 * 109.47851 * 59.99727 * 1 2 3 23 23 H 1.09001 * 110.36478 * 274.97629 * 6 5 3 24 24 H 1.08998 * 110.36859 * 37.30006 * 6 5 3 25 25 H 1.08991 * 111.00552 * 278.93287 * 7 6 5 26 26 H 1.09002 * 111.00267 * 155.08153 * 7 6 5 27 27 H 0.96997 * 119.99518 * 19.97438 * 10 8 7 28 28 H 0.97002 * 119.99594 * 179.97438 * 14 13 11 29 29 H 1.09004 * 109.87531 * 300.21113 * 19 5 3 30 30 H 1.09000 * 109.87938 * 61.37366 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.3299 0.1189 0.0053 7 6 5.6470 0.6613 -0.6035 8 6 5.6901 2.0991 -0.0217 9 1 6.1041 2.0977 0.9867 10 7 6.4600 2.9887 -0.8947 11 6 6.9691 4.1600 -0.4011 12 1 6.8036 4.4280 0.6320 13 6 7.6991 5.0027 -1.2282 14 7 7.9013 4.6759 -2.4870 15 14 8.3931 6.6010 -0.5550 16 1 9.7549 6.3602 -0.0139 17 1 8.4641 7.6075 -1.6444 18 1 7.5119 7.1057 0.5286 19 6 4.2023 2.5082 -0.0001 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 4.4977 -0.2275 1.0251 24 1 3.9319 -0.6883 -0.6097 25 1 5.5950 0.6817 -1.6919 26 1 6.5031 0.0773 -0.2657 27 1 6.6090 2.7478 -1.8224 28 1 8.4111 5.2649 -3.0651 29 1 3.9675 3.0990 -0.8855 30 1 3.9891 3.0846 0.9002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259897251.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:02 Heat of formation + Delta-G solvation = -84.287255 kcal Electronic energy + Delta-G solvation = -14368.129444 eV Core-core repulsion = 11777.183881 eV Total energy + Delta-G solvation = -2590.945563 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.57884 -39.42438 -37.31773 -35.98001 -33.38806 -31.21231 -29.49003 -28.15077 -25.88032 -24.08593 -22.03942 -21.23150 -19.48887 -18.89606 -18.10612 -17.80325 -16.86303 -16.19396 -15.53299 -15.24124 -14.95622 -14.69728 -14.18645 -13.94239 -13.48565 -13.22344 -12.90044 -12.84370 -12.57459 -12.45167 -12.10726 -11.82490 -11.76198 -11.73880 -11.58845 -11.01125 -9.81483 -9.11135 -7.96758 -5.27139 1.07484 1.49645 1.50822 1.59001 1.66296 2.55653 3.02550 3.35591 3.65406 3.89862 3.95383 4.33843 4.35715 4.36774 4.37122 4.52409 4.64640 4.72024 4.87932 5.00164 5.10064 5.18080 5.23556 5.37381 5.53355 6.24845 6.39875 7.14609 7.32216 8.03200 8.26674 9.26215 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055059 B = 0.006494 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.421875 B = 4310.447144 C = 4581.160293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.367 6.367 3 C 0.654 3.346 4 O -0.617 6.617 5 N -0.599 5.599 6 C 0.111 3.889 7 C -0.128 4.128 8 C 0.167 3.833 9 H 0.080 0.920 10 N -0.724 5.724 11 C -0.249 4.249 12 H 0.080 0.920 13 C -0.070 4.070 14 N -0.967 5.967 15 Si 0.972 3.028 16 H -0.283 1.283 17 H -0.298 1.298 18 H -0.271 1.271 19 C 0.110 3.890 20 H 0.143 0.857 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.068 0.932 26 H 0.110 0.890 27 H 0.377 0.623 28 H 0.252 0.748 29 H 0.040 0.960 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.345 -12.958 6.036 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.280 6.280 3 C 0.409 3.591 4 O -0.509 6.509 5 N -0.340 5.340 6 C -0.010 4.010 7 C -0.167 4.167 8 C 0.056 3.944 9 H 0.097 0.903 10 N -0.363 5.363 11 C -0.380 4.380 12 H 0.098 0.902 13 C -0.262 4.262 14 N -0.617 5.617 15 Si 0.800 3.200 16 H -0.210 1.210 17 H -0.225 1.225 18 H -0.196 1.196 19 C -0.015 4.015 20 H 0.161 0.839 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.113 0.887 24 H 0.115 0.885 25 H 0.087 0.913 26 H 0.129 0.871 27 H 0.210 0.790 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.634 -12.557 6.153 16.981 hybrid contribution 0.150 1.317 -0.364 1.375 sum -9.484 -11.240 5.789 15.805 Atomic orbital electron populations 1.23525 0.72816 1.05794 1.02382 1.86246 1.25708 1.29220 1.86862 1.17836 0.82447 0.82373 0.76445 1.90954 1.64983 1.36619 1.58366 1.47299 1.01490 1.10780 1.74421 1.22530 0.87875 0.87707 1.02882 1.23018 0.97795 0.95038 1.00828 1.21444 0.87131 0.90275 0.95562 0.90252 1.42536 1.61246 1.21657 1.10844 1.19667 1.25603 0.97031 0.95705 0.90199 1.25552 1.02149 1.02402 0.96124 1.69807 1.46307 1.39458 1.06134 0.85174 0.78464 0.79363 0.76950 1.20976 1.22490 1.19622 1.22946 0.93363 0.84889 1.00281 0.83914 0.92163 0.92513 0.88666 0.88490 0.91340 0.87135 0.79033 0.93917 0.94156 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.92 10.56 113.37 1.20 2.12 16 2 O -0.37 -9.86 10.10 -55.47 -0.56 -10.42 16 3 C 0.65 22.75 8.62 129.79 1.12 23.87 16 4 O -0.62 -25.97 16.46 19.81 0.33 -25.65 16 5 N -0.60 -19.71 3.33 -942.11 -3.13 -22.85 16 6 C 0.11 2.67 6.92 86.86 0.60 3.27 16 7 C -0.13 -3.54 6.69 31.99 0.21 -3.32 16 8 C 0.17 6.13 3.59 46.18 0.17 6.29 16 9 H 0.08 2.79 8.12 -2.39 -0.02 2.77 16 10 N -0.72 -34.97 5.18 -317.33 -1.64 -36.61 16 11 C -0.25 -13.37 9.98 84.04 0.84 -12.54 16 12 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 13 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 14 N -0.97 -58.21 13.06 21.65 0.28 -57.93 16 15 Si 0.97 45.51 29.55 68.60 2.03 47.53 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 17 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 C 0.11 4.24 6.62 86.73 0.57 4.81 16 20 H 0.14 1.44 8.14 -2.38 -0.02 1.42 16 21 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.10 1.96 8.04 -2.39 -0.02 1.95 16 25 H 0.07 2.04 8.00 -2.39 -0.02 2.03 16 26 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.38 19.58 7.71 -92.71 -0.72 18.87 16 28 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 29 H 0.04 1.82 8.03 -2.38 -0.02 1.80 16 30 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -69.32 262.37 2.90 -66.42 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.42 Total: 18.44 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 5.18 Total: 21.06 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -4.49 Total: -117.39 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.23 Total: -36.07 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -69.32 2.90 -66.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259897251.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.866 kcal (2) G-P(sol) polarization free energy of solvation -69.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds