Wall clock time and date at job start Mon Mar 30 2020 02:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 120.00110 * 2 1 4 4 C 1.34778 * 119.99972 * 180.02562 * 2 1 3 5 5 O 1.21591 * 120.00255 * 1.70133 * 4 2 1 6 6 N 1.34773 * 119.99981 * 181.70523 * 4 2 1 7 7 C 1.47585 * 134.49320 * 184.81470 * 6 4 2 8 8 C 1.53950 * 86.11852 * 204.64090 * 7 6 4 9 9 O 1.42896 * 113.73815 * 221.94259 * 8 7 6 10 10 C 1.34924 * 116.99767 * 208.07225 * 9 8 7 11 11 H 1.08006 * 119.99978 * 0.02562 * 10 9 8 12 12 C 1.38639 * 120.00414 * 180.02562 * 10 9 8 13 13 N 1.31588 * 119.99522 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 120.00394 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47283 * 59.99844 * 14 12 10 16 16 H 1.48500 * 109.47447 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47312 * 300.00122 * 14 12 10 18 18 C 1.47929 * 134.50405 * 4.82312 * 6 4 2 19 19 H 1.09001 * 109.47238 * 239.99937 * 1 2 3 20 20 H 1.09000 * 109.47212 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47307 * 119.99910 * 1 2 3 22 22 H 1.09001 * 109.47069 * 263.21889 * 3 2 1 23 23 H 1.09006 * 109.47127 * 23.21651 * 3 2 1 24 24 H 1.09006 * 109.47368 * 143.21555 * 3 2 1 25 25 H 1.09001 * 113.76861 * 90.33724 * 7 6 4 26 26 H 1.09004 * 113.77119 * 318.94348 * 7 6 4 27 27 H 1.08999 * 113.74060 * 90.74077 * 8 7 6 28 28 H 0.96999 * 119.99534 * 180.02562 * 13 12 10 29 29 H 1.08994 * 113.86911 * 41.09310 * 18 6 4 30 30 H 1.09001 * 113.76445 * 269.60799 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5313 -2.2200 -0.0323 6 7 3.4861 -1.1675 0.0342 7 6 4.5226 -2.2153 -0.0435 8 6 5.4262 -1.2314 0.7217 9 8 6.7672 -1.1810 0.2306 10 6 7.7310 -0.8482 1.1142 11 1 7.4720 -0.6349 2.1409 12 6 9.0537 -0.7800 0.7045 13 7 9.3690 -1.0393 -0.5465 14 14 10.3880 -0.3200 1.9280 15 1 10.4062 -1.3089 3.0357 16 1 11.7065 -0.3170 1.2447 17 1 10.1121 1.0323 2.4762 18 6 4.5202 -0.1179 0.1657 19 1 -0.3634 -0.5138 0.8900 20 1 -0.3634 1.0277 0.0005 21 1 -0.3634 -0.5138 -0.8900 22 1 2.4842 1.5226 -1.0205 23 1 1.5612 2.0556 0.4051 24 1 3.0920 1.1718 0.6154 25 1 4.8609 -2.4241 -1.0585 26 1 4.2792 -3.1167 0.5190 27 1 5.3742 -1.3396 1.8050 28 1 10.2945 -0.9920 -0.8331 29 1 4.2749 0.6540 0.8951 30 1 4.8578 0.2881 -0.7879 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259935486.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:54 Heat of formation + Delta-G solvation = 3.394443 kcal Electronic energy + Delta-G solvation = -14425.706999 eV Core-core repulsion = 11838.563600 eV Total energy + Delta-G solvation = -2587.143399 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.20457 -37.92023 -35.30923 -35.26697 -31.68787 -29.11848 -27.99415 -25.59284 -25.31610 -24.31275 -20.63569 -19.15901 -17.90505 -16.88753 -16.33051 -16.18423 -15.24668 -14.59624 -14.17952 -13.53839 -13.41606 -13.23353 -12.83243 -12.61238 -12.37147 -12.27935 -11.86376 -11.49403 -11.30504 -10.98471 -10.77065 -10.32968 -9.87995 -9.53263 -9.28599 -8.75285 -8.09285 -8.07660 -6.05328 -3.71106 2.68873 3.26661 3.29129 3.32205 3.41170 3.84135 4.24234 4.95336 5.05801 5.12771 5.26933 5.37780 5.41492 5.52174 5.59986 5.66997 5.73239 5.81917 5.97514 6.10878 6.15830 6.32982 6.60286 6.65066 7.24688 7.37126 8.27089 8.32594 8.78632 9.37382 9.99126 11.14546 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.064853 B = 0.006322 C = 0.006058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.638890 B = 4427.866137 C = 4621.205853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.639 5.639 3 C 0.056 3.944 4 C 0.730 3.270 5 O -0.597 6.597 6 N -0.658 5.658 7 C 0.125 3.875 8 C 0.071 3.929 9 O -0.270 6.270 10 C -0.371 4.371 11 H 0.066 0.934 12 C 0.027 3.973 13 N -0.886 5.886 14 Si 0.927 3.073 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.277 1.277 18 C 0.072 3.928 19 H 0.055 0.945 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.068 0.932 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.261 0.739 29 H 0.083 0.917 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.558 5.553 2.229 13.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.378 5.378 3 C -0.087 4.087 4 C 0.435 3.565 5 O -0.477 6.477 6 N -0.398 5.398 7 C 0.003 3.997 8 C 0.010 3.990 9 O -0.182 6.182 10 C -0.450 4.450 11 H 0.084 0.916 12 C -0.172 4.172 13 N -0.528 5.528 14 Si 0.754 3.246 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.203 1.203 18 C -0.051 4.051 19 H 0.074 0.926 20 H 0.090 0.910 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.904 4.931 1.894 13.023 hybrid contribution 0.514 0.515 0.679 0.995 sum -11.390 5.447 2.573 12.885 Atomic orbital electron populations 1.21422 0.78200 1.01527 1.01992 1.46831 1.06556 1.05051 1.79356 1.22490 0.98632 0.85155 1.02417 1.15288 0.80046 0.83539 0.77643 1.90879 1.67058 1.30408 1.59312 1.48895 1.01781 1.12830 1.76337 1.23338 0.82353 0.92396 1.01650 1.23689 0.85756 0.92633 0.96923 1.85722 1.10101 1.87101 1.35314 1.20869 0.86457 1.46645 0.91032 0.91586 1.24974 0.96822 0.98725 0.96689 1.70008 1.18140 1.49539 1.15073 0.86018 0.80273 0.78701 0.79618 1.20272 1.20834 1.20301 1.24372 0.85338 0.93777 1.01571 0.92600 0.91026 0.92556 0.92974 0.91345 0.89073 0.89345 0.90388 0.90337 0.92951 0.89971 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.29 10.16 59.85 0.61 1.89 16 2 N -0.64 -9.29 3.27 -195.34 -0.64 -9.92 16 3 C 0.06 0.63 9.59 59.84 0.57 1.20 16 4 C 0.73 13.56 8.51 -86.92 -0.74 12.82 16 5 O -0.60 -13.05 17.08 5.29 0.09 -12.96 16 6 N -0.66 -11.90 3.60 -184.05 -0.66 -12.56 16 7 C 0.13 2.37 8.67 -2.96 -0.03 2.35 16 8 C 0.07 1.45 4.53 -25.80 -0.12 1.33 16 9 O -0.27 -7.13 9.80 -16.49 -0.16 -7.29 16 10 C -0.37 -10.17 9.85 30.88 0.30 -9.87 16 11 H 0.07 1.68 7.61 -52.48 -0.40 1.28 16 12 C 0.03 0.76 5.49 -17.51 -0.10 0.66 16 13 N -0.89 -26.57 13.68 55.48 0.76 -25.82 16 14 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 C 0.07 1.22 6.57 -2.77 -0.02 1.20 16 19 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 20 H 0.07 0.58 7.71 -51.93 -0.40 0.18 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.58 7.78 -51.93 -0.40 0.18 16 24 H 0.09 1.08 3.73 -51.93 -0.19 0.89 16 25 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 26 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.08 1.54 7.83 -51.93 -0.41 1.13 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.08 1.19 5.57 -51.93 -0.29 0.90 16 30 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 259.07 15.07 3.90 3.90 Total: -1.00 -33.81 259.07 -5.01 -38.82 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -3.76 Total: -1.77 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 0.49 Total: 11.60 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.54 Total: -48.30 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.07 Total: -20.24 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -33.81 -5.01 -38.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935486.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.213 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds