Wall clock time and date at job start Mon Mar 30 2020 02:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 120.00110 * 2 1 4 4 C 1.34778 * 119.99972 * 180.02562 * 2 1 3 5 5 O 1.21591 * 120.00255 * 1.70133 * 4 2 1 6 6 N 1.34773 * 119.99981 * 181.70523 * 4 2 1 7 7 C 1.47585 * 134.49320 * 184.81470 * 6 4 2 8 8 C 1.53950 * 86.11852 * 204.64090 * 7 6 4 9 9 O 1.42896 * 113.73815 * 221.94259 * 8 7 6 10 10 C 1.34924 * 116.99767 * 208.07225 * 9 8 7 11 11 H 1.08006 * 119.99978 * 0.02562 * 10 9 8 12 12 C 1.38639 * 120.00414 * 180.02562 * 10 9 8 13 13 N 1.31588 * 119.99522 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 120.00394 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47283 * 59.99844 * 14 12 10 16 16 H 1.48500 * 109.47447 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47312 * 300.00122 * 14 12 10 18 18 C 1.47929 * 134.50405 * 4.82312 * 6 4 2 19 19 H 1.09001 * 109.47238 * 239.99937 * 1 2 3 20 20 H 1.09000 * 109.47212 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47307 * 119.99910 * 1 2 3 22 22 H 1.09001 * 109.47069 * 263.21889 * 3 2 1 23 23 H 1.09006 * 109.47127 * 23.21651 * 3 2 1 24 24 H 1.09006 * 109.47368 * 143.21555 * 3 2 1 25 25 H 1.09001 * 113.76861 * 90.33724 * 7 6 4 26 26 H 1.09004 * 113.77119 * 318.94348 * 7 6 4 27 27 H 1.08999 * 113.74060 * 90.74077 * 8 7 6 28 28 H 0.96999 * 119.99534 * 180.02562 * 13 12 10 29 29 H 1.08994 * 113.86911 * 41.09310 * 18 6 4 30 30 H 1.09001 * 113.76445 * 269.60799 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5313 -2.2200 -0.0323 6 7 3.4861 -1.1675 0.0342 7 6 4.5226 -2.2153 -0.0435 8 6 5.4262 -1.2314 0.7217 9 8 6.7672 -1.1810 0.2306 10 6 7.7310 -0.8482 1.1142 11 1 7.4720 -0.6349 2.1409 12 6 9.0537 -0.7800 0.7045 13 7 9.3690 -1.0393 -0.5465 14 14 10.3880 -0.3200 1.9280 15 1 10.4062 -1.3089 3.0357 16 1 11.7065 -0.3170 1.2447 17 1 10.1121 1.0323 2.4762 18 6 4.5202 -0.1179 0.1657 19 1 -0.3634 -0.5138 0.8900 20 1 -0.3634 1.0277 0.0005 21 1 -0.3634 -0.5138 -0.8900 22 1 2.4842 1.5226 -1.0205 23 1 1.5612 2.0556 0.4051 24 1 3.0920 1.1718 0.6154 25 1 4.8609 -2.4241 -1.0585 26 1 4.2792 -3.1167 0.5190 27 1 5.3742 -1.3396 1.8050 28 1 10.2945 -0.9920 -0.8331 29 1 4.2749 0.6540 0.8951 30 1 4.8578 0.2881 -0.7879 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259935486.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:54 Heat of formation + Delta-G solvation = -21.351208 kcal Electronic energy + Delta-G solvation = -14426.780051 eV Core-core repulsion = 11838.563600 eV Total energy + Delta-G solvation = -2588.216451 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.62876 -39.45824 -37.10362 -36.56772 -33.73327 -30.48432 -29.12077 -27.03560 -26.84973 -25.96021 -22.17863 -20.51855 -19.84879 -18.26449 -17.76970 -17.67385 -16.82622 -16.10210 -15.60532 -15.13630 -14.94761 -14.55209 -14.29649 -14.00070 -13.66456 -13.45139 -13.30815 -13.02622 -12.78169 -12.67855 -12.36174 -12.08275 -11.44566 -11.37802 -10.99675 -10.16137 -10.04910 -9.35739 -8.14040 -5.84060 1.37027 1.47447 1.52974 1.60056 1.98347 2.37871 2.62410 3.17777 3.61262 3.77668 3.91296 4.09401 4.21789 4.41384 4.43946 4.52836 4.59352 4.65221 4.69462 4.73823 4.88298 4.98052 5.06081 5.29977 5.55985 5.95725 6.23948 6.89608 7.29308 7.38377 8.03404 9.09531 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.064853 B = 0.006322 C = 0.006058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.638890 B = 4427.866137 C = 4621.205853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.635 5.635 3 C 0.052 3.948 4 C 0.721 3.279 5 O -0.638 6.638 6 N -0.658 5.658 7 C 0.125 3.875 8 C 0.058 3.942 9 O -0.309 6.309 10 C -0.378 4.378 11 H 0.082 0.918 12 C -0.038 4.038 13 N -0.939 5.939 14 Si 1.003 2.997 15 H -0.267 1.267 16 H -0.285 1.285 17 H -0.261 1.261 18 C 0.091 3.909 19 H 0.050 0.950 20 H 0.114 0.886 21 H 0.047 0.953 22 H 0.056 0.944 23 H 0.105 0.895 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.260 0.740 29 H 0.117 0.883 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.235 7.417 3.574 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.372 5.372 3 C -0.089 4.089 4 C 0.425 3.575 5 O -0.521 6.521 6 N -0.398 5.398 7 C 0.002 3.998 8 C -0.002 4.002 9 O -0.223 6.223 10 C -0.456 4.456 11 H 0.099 0.901 12 C -0.232 4.232 13 N -0.583 5.583 14 Si 0.825 3.175 15 H -0.192 1.192 16 H -0.210 1.210 17 H -0.185 1.185 18 C -0.031 4.031 19 H 0.069 0.931 20 H 0.132 0.868 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.124 0.876 24 H 0.103 0.897 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.134 0.866 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.628 6.842 3.256 14.727 hybrid contribution 0.576 -0.069 0.247 0.630 sum -12.053 6.774 3.503 14.262 Atomic orbital electron populations 1.21656 0.76384 1.04138 1.01378 1.47015 1.07778 1.04748 1.77697 1.22652 0.98956 0.84454 1.02860 1.15579 0.79908 0.84332 0.77666 1.90842 1.67746 1.32315 1.61174 1.48808 1.01911 1.12629 1.76435 1.23235 0.82674 0.92856 1.01070 1.23970 0.83717 0.94964 0.97537 1.85660 1.12331 1.87703 1.36582 1.21398 0.87037 1.45403 0.91778 0.90092 1.26165 0.99458 0.98830 0.98721 1.70185 1.18634 1.51829 1.17639 0.84852 0.76433 0.79156 0.77010 1.19161 1.20992 1.18544 1.24253 0.83483 0.93326 1.02012 0.93075 0.86757 0.93414 0.92552 0.87606 0.89733 0.90262 0.89992 0.89604 0.93105 0.86579 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.18 10.16 127.77 1.30 3.48 16 2 N -0.64 -16.91 3.27 -890.18 -2.91 -19.83 16 3 C 0.05 0.99 9.59 127.77 1.23 2.22 16 4 C 0.72 26.07 8.51 179.06 1.52 27.59 16 5 O -0.64 -27.89 17.08 -4.00 -0.07 -27.96 16 6 N -0.66 -23.24 3.60 -858.28 -3.09 -26.33 16 7 C 0.13 4.78 8.67 86.49 0.75 5.53 16 8 C 0.06 2.35 4.53 31.25 0.14 2.49 16 9 O -0.31 -16.52 9.80 -81.93 -0.80 -17.33 16 10 C -0.38 -20.63 9.85 67.92 0.67 -19.96 16 11 H 0.08 4.02 7.61 -2.91 -0.02 4.00 16 12 C -0.04 -2.13 5.49 84.83 0.47 -1.66 16 13 N -0.94 -57.36 13.68 21.61 0.30 -57.07 16 14 Si 1.00 42.67 29.55 68.60 2.03 44.70 16 15 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 16 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 17 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 18 C 0.09 2.95 6.57 86.42 0.57 3.52 16 19 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 20 H 0.11 1.34 7.71 -2.39 -0.02 1.32 16 21 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.11 1.27 7.78 -2.38 -0.02 1.25 16 24 H 0.08 1.71 3.73 -2.38 -0.01 1.70 16 25 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 26 H 0.08 3.02 8.14 -2.38 -0.02 3.00 16 27 H 0.09 3.29 7.83 -2.39 -0.02 3.28 16 28 H 0.26 14.94 8.31 -92.71 -0.77 14.16 16 29 H 0.12 3.01 5.57 -2.39 -0.01 3.00 16 30 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -73.92 259.07 3.23 -70.69 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 1.13 Total: 9.89 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 6.64 Total: 23.22 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -5.70 Total: -103.22 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -0.87 Total: -45.28 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -73.92 3.23 -70.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935486.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.342 kcal (2) G-P(sol) polarization free energy of solvation -73.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds