Wall clock time and date at job start Mon Mar 30 2020 02:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46979 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47371 * 119.99948 * 8 6 4 11 11 H 1.48496 * 109.47443 * 240.00340 * 8 6 4 12 12 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 13 13 H 1.08998 * 110.28012 * 62.11809 * 12 2 1 14 14 C 1.53079 * 110.32144 * 300.00009 * 12 2 1 15 15 C 1.44818 * 115.41680 * 146.55504 * 14 12 2 16 16 C 1.55232 * 110.45535 * 64.06052 * 15 14 12 17 17 S 1.79263 * 109.69273 * 286.73388 * 16 15 14 18 18 C 1.82326 * 106.80330 * 88.65369 * 17 16 15 19 19 C 1.51410 * 110.32722 * 184.41276 * 12 2 1 20 20 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 22 22 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 23 23 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 24 24 H 1.09001 * 108.28692 * 268.09055 * 14 12 2 25 25 H 1.08999 * 108.29414 * 25.00793 * 14 12 2 26 26 H 1.08996 * 109.30621 * 184.36499 * 15 14 12 27 27 H 1.09001 * 109.30210 * 303.75427 * 15 14 12 28 28 H 1.09005 * 109.43464 * 46.79933 * 16 15 14 29 29 H 1.08999 * 109.43842 * 166.71112 * 16 15 14 30 30 H 1.09005 * 109.18675 * 79.46005 * 18 17 16 31 31 H 1.09006 * 109.18569 * 198.75846 * 18 17 16 32 32 H 1.09002 * 109.52521 * 344.20100 * 19 12 2 33 33 H 1.08997 * 109.52622 * 104.41141 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 6 2.0400 -0.7213 1.2492 13 1 1.7152 -1.7617 1.2438 14 6 1.5406 -0.0149 2.5121 15 6 1.2690 -0.8795 3.6417 16 6 2.5748 -1.5644 4.1269 17 16 3.0610 -2.8342 2.9588 18 6 4.1145 -2.0257 1.7095 19 6 3.5500 -0.6387 1.3246 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 0.7087 1.1612 -3.4844 24 1 2.2899 0.7169 2.8138 25 1 0.6250 0.5221 2.2644 26 1 0.8484 -0.2883 4.4551 27 1 0.5497 -1.6433 3.3461 28 1 3.3675 -0.8202 4.2044 29 1 2.4056 -2.0170 5.1040 30 1 5.1197 -1.9039 2.1132 31 1 4.1598 -2.6528 0.8190 32 1 3.9474 -0.3398 0.3546 33 1 3.8376 0.0938 2.0788 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259938680.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:33 Heat of formation + Delta-G solvation = -35.800785 kcal Electronic energy + Delta-G solvation = -13160.032063 eV Core-core repulsion = 11117.482245 eV Total energy + Delta-G solvation = -2042.549817 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.45856 -35.58881 -33.75425 -32.28607 -28.82331 -27.29118 -26.03243 -22.76654 -22.31285 -20.69380 -18.23282 -17.27743 -16.64088 -16.14836 -15.47080 -15.18627 -14.99226 -14.44836 -14.27661 -13.85451 -13.26445 -13.16959 -12.88947 -12.78156 -12.46807 -12.16028 -12.12225 -12.00457 -11.57488 -11.50689 -11.19120 -10.73405 -10.64761 -10.41082 -10.32980 -8.39633 -8.04131 -6.15343 0.86999 1.39036 1.42099 1.52138 1.86269 2.45200 3.23758 3.81403 3.89367 4.06644 4.19511 4.24212 4.42153 4.62991 4.73279 4.77116 4.88598 4.96124 4.99674 5.08426 5.21738 5.33981 5.39935 5.42569 5.46294 5.60187 5.67916 5.72190 6.12623 6.22182 6.47666 6.97100 7.51992 9.00816 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.040061 B = 0.009811 C = 0.008469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.774001 B = 2853.158445 C = 3305.317573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.051 3.949 3 H -0.009 1.009 4 C -0.512 4.512 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.921 5.921 8 Si 0.945 3.055 9 H -0.267 1.267 10 H -0.285 1.285 11 H -0.283 1.283 12 C -0.076 4.076 13 H 0.073 0.927 14 C -0.126 4.126 15 C -0.103 4.103 16 C -0.077 4.077 17 S -0.299 6.299 18 C -0.067 4.067 19 C -0.111 4.111 20 H 0.020 0.980 21 H 0.033 0.967 22 H 0.049 0.951 23 H 0.257 0.743 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.792 -3.264 11.887 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.032 3.968 3 H 0.010 0.990 4 C -0.550 4.550 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.772 3.228 9 H -0.191 1.191 10 H -0.211 1.211 11 H -0.209 1.209 12 C -0.096 4.096 13 H 0.091 0.909 14 C -0.164 4.164 15 C -0.142 4.142 16 C -0.225 4.225 17 S -0.072 6.072 18 C -0.215 4.215 19 C -0.150 4.150 20 H 0.040 0.960 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.138 0.862 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.476 -4.195 11.810 13.006 hybrid contribution 0.465 1.100 -1.388 1.831 sum 3.940 -3.095 10.422 11.564 Atomic orbital electron populations 1.21712 0.99050 0.98411 0.99457 1.18649 0.92340 0.93828 0.91973 0.99049 1.21534 1.30041 1.11765 0.91665 0.92972 1.25696 0.95678 0.95798 1.01743 1.70032 1.38249 1.24428 1.23436 0.85697 0.78103 0.78841 0.80182 1.19128 1.21075 1.20888 1.21124 0.94234 1.00138 0.94060 0.90918 1.20494 1.01732 0.98996 0.95138 1.20561 0.96419 0.99280 0.97969 1.23609 1.00516 0.99141 0.99244 1.86026 1.67765 1.22040 1.31360 1.23899 0.99622 0.99319 0.98644 1.22021 0.96579 0.94845 1.01546 0.96039 0.94783 0.93245 0.93364 0.92687 0.92734 0.89234 0.92065 0.89337 0.86245 0.88874 0.89357 0.91888 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.29 8.72 71.98 0.63 -5.66 16 2 C 0.05 2.50 1.77 -11.54 -0.02 2.48 16 3 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 4 C -0.51 -27.81 7.50 25.60 0.19 -27.62 16 5 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 6 C 0.01 0.47 5.30 84.65 0.45 0.92 16 7 N -0.92 -53.84 11.32 21.44 0.24 -53.59 16 8 Si 0.95 44.13 29.54 68.60 2.03 46.15 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 C -0.08 -3.01 1.43 -11.29 -0.02 -3.02 16 13 H 0.07 3.05 6.24 -2.39 -0.01 3.04 16 14 C -0.13 -4.08 4.42 28.14 0.12 -3.96 16 15 C -0.10 -2.67 5.48 28.88 0.16 -2.51 16 16 C -0.08 -1.82 5.94 72.75 0.43 -1.39 16 17 S -0.30 -8.87 20.09 -56.49 -1.13 -10.01 16 18 C -0.07 -2.06 6.60 72.53 0.48 -1.58 16 19 C -0.11 -3.92 5.02 30.63 0.15 -3.77 16 20 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 21 H 0.03 1.45 6.05 -2.39 -0.01 1.44 16 22 H 0.05 2.71 6.07 -2.39 -0.01 2.69 16 23 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 24 H 0.05 1.66 6.70 -2.39 -0.02 1.65 16 25 H 0.05 1.89 5.53 -2.39 -0.01 1.87 16 26 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.06 1.74 8.10 -2.39 -0.02 1.72 16 28 H 0.09 1.95 7.89 -2.49 -0.02 1.93 16 29 H 0.12 2.27 8.14 -2.50 -0.02 2.25 16 30 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 32 H 0.06 2.56 6.90 -2.39 -0.02 2.54 16 33 H 0.07 2.10 6.55 -2.39 -0.02 2.08 16 Total: -1.00 -59.24 259.22 4.78 -54.46 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 1.07 Total: 9.09 kcal Atomic # 6 Polarization: -48.68 SS G_CDS: 2.58 Total: -46.10 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.24 Total: -53.59 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.13 Total: -10.01 kcal Total: -59.24 4.78 -54.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938680.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.658 kcal (2) G-P(sol) polarization free energy of solvation -59.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds