Wall clock time and date at job start Mon Mar 30 2020 02:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 C 1.50698 * 109.47415 * 120.00259 * 2 1 3 5 5 H 1.07995 * 120.00295 * 119.99868 * 4 2 1 6 6 C 1.37886 * 119.99591 * 300.00020 * 4 2 1 7 7 N 1.31511 * 120.00414 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99675 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47060 * 90.00160 * 8 6 4 10 10 H 1.48500 * 109.47112 * 210.00119 * 8 6 4 11 11 H 1.48502 * 109.46912 * 330.00174 * 8 6 4 12 12 C 1.52996 * 109.47319 * 240.00251 * 2 1 3 13 13 H 1.08997 * 109.48898 * 299.97255 * 12 2 1 14 14 C 1.51595 * 109.48111 * 59.99916 * 12 2 1 15 15 C 1.53186 * 106.80033 * 222.68614 * 14 12 2 16 16 C 1.45382 * 115.33341 * 268.30123 * 15 14 12 17 17 S 1.83637 * 109.69396 * 64.73508 * 16 15 14 18 18 C 1.79970 * 102.84211 * 291.06679 * 17 16 15 19 19 C 1.52977 * 109.48494 * 179.97438 * 12 2 1 20 20 H 1.09001 * 109.47167 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47312 * 299.99984 * 1 2 3 22 22 H 1.09000 * 109.47319 * 59.99745 * 1 2 3 23 23 H 0.96998 * 120.00295 * 180.02562 * 7 6 4 24 24 H 1.08994 * 109.99166 * 103.36348 * 14 12 2 25 25 H 1.09003 * 109.98338 * 342.00641 * 14 12 2 26 26 H 1.09002 * 108.30873 * 29.82516 * 15 14 12 27 27 H 1.09002 * 108.30739 * 146.97354 * 15 14 12 28 28 H 1.09002 * 109.43082 * 184.79803 * 16 15 14 29 29 H 1.08995 * 109.44205 * 304.70895 * 16 15 14 30 30 H 1.09000 * 108.74852 * 207.64765 * 18 17 16 31 31 H 1.09000 * 108.75032 * 325.88180 * 18 17 16 32 32 H 1.09008 * 108.27400 * 76.64059 * 19 12 2 33 33 H 1.09003 * 108.12539 * 319.66738 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8296 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5459 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7118 12 6 2.0400 -0.7212 -1.2492 13 1 1.6772 -1.7490 -1.2493 14 6 1.5348 -0.0067 -2.4871 15 6 1.0837 -1.0908 -3.4710 16 6 2.0986 -1.5397 -4.4101 17 16 3.4626 -2.3656 -3.4993 18 6 4.2314 -1.0035 -2.6091 19 6 3.5698 -0.7208 -1.2498 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 0.7087 1.1612 3.4845 24 1 2.3359 0.5865 -2.9280 25 1 0.6929 0.6358 -2.2289 26 1 0.7422 -1.9527 -2.8978 27 1 0.2392 -0.7049 -4.0420 28 1 1.6549 -2.2432 -5.1146 29 1 2.4940 -0.6822 -4.9544 30 1 5.2823 -1.2414 -2.4443 31 1 4.1683 -0.1044 -3.2220 32 1 3.9120 -1.4732 -0.5392 33 1 3.9087 0.2549 -0.9014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259938689.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:34 Heat of formation + Delta-G solvation = -24.779564 kcal Electronic energy + Delta-G solvation = -13091.660484 eV Core-core repulsion = 11049.588583 eV Total energy + Delta-G solvation = -2042.071901 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.80768 -33.97472 -32.35772 -30.60743 -27.42372 -25.59830 -24.12712 -21.65147 -20.41821 -18.91915 -16.35093 -15.76465 -15.08717 -14.70434 -14.45262 -13.71029 -13.41488 -12.89635 -12.69401 -12.34354 -11.83371 -11.49064 -11.07933 -10.98362 -10.74422 -10.55574 -10.40825 -10.26727 -10.05573 -9.93376 -9.61448 -9.23312 -8.88395 -8.60987 -8.26149 -7.34823 -5.92671 -3.97893 2.03701 2.86831 3.33089 3.40075 3.43974 4.48350 4.92277 5.25874 5.28414 5.37401 5.44610 5.48022 5.66667 5.80950 5.94826 6.08912 6.26432 6.30582 6.55695 6.59298 6.70667 6.89909 6.96945 7.10165 7.19717 7.36058 7.46538 7.80539 8.06653 8.22106 8.53875 9.06159 9.66664 11.13216 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042843 B = 0.009021 C = 0.008006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.394086 B = 3103.073639 C = 3496.352718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.049 3.951 3 H 0.022 0.978 4 C -0.506 4.506 5 H 0.055 0.945 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 C -0.072 4.072 13 H 0.067 0.933 14 C -0.124 4.124 15 C -0.129 4.129 16 C -0.059 4.059 17 S -0.284 6.284 18 C -0.078 4.078 19 C -0.100 4.100 20 H 0.023 0.977 21 H 0.079 0.921 22 H 0.010 0.990 23 H 0.258 0.742 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 -2.039 -11.228 11.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.031 3.969 3 H 0.040 0.960 4 C -0.544 4.544 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.714 3.286 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.091 4.091 13 H 0.085 0.915 14 C -0.162 4.162 15 C -0.168 4.168 16 C -0.206 4.206 17 S -0.058 6.058 18 C -0.227 4.227 19 C -0.140 4.140 20 H 0.042 0.958 21 H 0.098 0.902 22 H 0.028 0.972 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.526 -3.012 -11.097 11.772 hybrid contribution 0.047 0.833 0.959 1.271 sum 2.573 -2.179 -10.138 10.684 Atomic orbital electron populations 1.21859 0.98982 0.98820 0.99823 1.18738 0.92290 0.95302 0.90606 0.95974 1.21242 1.30504 1.12061 0.90575 0.92641 1.24968 0.95237 0.95045 0.98891 1.69888 1.37099 1.23188 1.23052 0.86691 0.78528 0.80233 0.83144 1.20861 1.21375 1.19942 1.21177 0.92945 0.99771 0.95219 0.91508 1.21757 1.01055 0.97183 0.96155 1.20615 0.97704 1.00603 0.97874 1.22228 0.96872 1.02220 0.99293 1.86618 1.39867 1.20885 1.58452 1.23408 1.01545 0.97582 1.00132 1.21748 0.96918 1.02244 0.93075 0.95768 0.90207 0.97155 0.93228 0.93051 0.90609 0.90726 0.92439 0.88504 0.90685 0.89038 0.90842 0.91666 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.71 37.15 0.32 -2.96 16 2 C 0.05 1.19 1.72 -91.78 -0.16 1.03 16 3 H 0.02 0.59 8.10 -51.93 -0.42 0.17 16 4 C -0.51 -13.67 7.97 -34.44 -0.27 -13.94 16 5 H 0.06 1.50 6.82 -52.49 -0.36 1.14 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.63 11.32 55.43 0.63 -25.01 16 8 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 12 C -0.07 -1.44 1.38 -91.34 -0.13 -1.57 16 13 H 0.07 1.42 6.84 -51.93 -0.36 1.06 16 14 C -0.12 -2.09 5.03 -27.35 -0.14 -2.23 16 15 C -0.13 -1.86 4.99 -30.22 -0.15 -2.01 16 16 C -0.06 -0.76 6.06 33.57 0.20 -0.55 16 17 S -0.28 -4.37 21.56 -107.50 -2.32 -6.69 16 18 C -0.08 -1.20 5.60 37.57 0.21 -0.99 16 19 C -0.10 -1.86 4.51 -26.33 -0.12 -1.98 16 20 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 21 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 22 H 0.01 0.21 6.10 -51.93 -0.32 -0.11 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.05 0.81 6.24 -51.93 -0.32 0.49 16 25 H 0.08 1.34 5.63 -51.93 -0.29 1.05 16 26 H 0.07 1.19 6.99 -51.93 -0.36 0.82 16 27 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.29 8.14 -51.70 -0.42 0.86 16 31 H 0.07 1.03 7.06 -51.70 -0.36 0.67 16 32 H 0.06 1.31 7.19 -51.92 -0.37 0.94 16 33 H 0.06 1.22 7.91 -51.93 -0.41 0.81 16 LS Contribution 258.97 15.07 3.90 3.90 Total: -1.00 -27.85 258.97 -8.27 -36.12 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.14 Total: -1.11 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -0.32 Total: -23.65 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.63 Total: -25.01 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -4.37 SS G_CDS: -2.32 Total: -6.69 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.85 -8.27 -36.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938689.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.340 kcal (2) G-P(sol) polarization free energy of solvation -27.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds