Wall clock time and date at job start Mon Mar 30 2020 02:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 C 1.50698 * 109.47415 * 120.00259 * 2 1 3 5 5 H 1.07995 * 120.00295 * 119.99868 * 4 2 1 6 6 C 1.37886 * 119.99591 * 300.00020 * 4 2 1 7 7 N 1.31511 * 120.00414 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99675 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47060 * 90.00160 * 8 6 4 10 10 H 1.48500 * 109.47112 * 210.00119 * 8 6 4 11 11 H 1.48502 * 109.46912 * 330.00174 * 8 6 4 12 12 C 1.52996 * 109.47319 * 240.00251 * 2 1 3 13 13 H 1.08997 * 109.48898 * 299.97255 * 12 2 1 14 14 C 1.51595 * 109.48111 * 59.99916 * 12 2 1 15 15 C 1.53186 * 106.80033 * 222.68614 * 14 12 2 16 16 C 1.45382 * 115.33341 * 268.30123 * 15 14 12 17 17 S 1.83637 * 109.69396 * 64.73508 * 16 15 14 18 18 C 1.79970 * 102.84211 * 291.06679 * 17 16 15 19 19 C 1.52977 * 109.48494 * 179.97438 * 12 2 1 20 20 H 1.09001 * 109.47167 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47312 * 299.99984 * 1 2 3 22 22 H 1.09000 * 109.47319 * 59.99745 * 1 2 3 23 23 H 0.96998 * 120.00295 * 180.02562 * 7 6 4 24 24 H 1.08994 * 109.99166 * 103.36348 * 14 12 2 25 25 H 1.09003 * 109.98338 * 342.00641 * 14 12 2 26 26 H 1.09002 * 108.30873 * 29.82516 * 15 14 12 27 27 H 1.09002 * 108.30739 * 146.97354 * 15 14 12 28 28 H 1.09002 * 109.43082 * 184.79803 * 16 15 14 29 29 H 1.08995 * 109.44205 * 304.70895 * 16 15 14 30 30 H 1.09000 * 108.74852 * 207.64765 * 18 17 16 31 31 H 1.09000 * 108.75032 * 325.88180 * 18 17 16 32 32 H 1.09008 * 108.27400 * 76.64059 * 19 12 2 33 33 H 1.09003 * 108.12539 * 319.66738 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8296 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5459 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7118 12 6 2.0400 -0.7212 -1.2492 13 1 1.6772 -1.7490 -1.2493 14 6 1.5348 -0.0067 -2.4871 15 6 1.0837 -1.0908 -3.4710 16 6 2.0986 -1.5397 -4.4101 17 16 3.4626 -2.3656 -3.4993 18 6 4.2314 -1.0035 -2.6091 19 6 3.5698 -0.7208 -1.2498 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 0.7087 1.1612 3.4845 24 1 2.3359 0.5865 -2.9280 25 1 0.6929 0.6358 -2.2289 26 1 0.7422 -1.9527 -2.8978 27 1 0.2392 -0.7049 -4.0420 28 1 1.6549 -2.2432 -5.1146 29 1 2.4940 -0.6822 -4.9544 30 1 5.2823 -1.2414 -2.4443 31 1 4.1683 -0.1044 -3.2220 32 1 3.9120 -1.4732 -0.5392 33 1 3.9087 0.2549 -0.9014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259938689.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:34 Heat of formation + Delta-G solvation = -38.891967 kcal Electronic energy + Delta-G solvation = -13092.272444 eV Core-core repulsion = 11049.588583 eV Total energy + Delta-G solvation = -2042.683861 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.33729 -35.66380 -33.90770 -32.37679 -28.91939 -27.46245 -25.77906 -23.01128 -22.03018 -20.55655 -18.33221 -17.18664 -16.61619 -16.16196 -15.93872 -15.19153 -14.80949 -14.49178 -14.16108 -13.92705 -13.45862 -13.18280 -12.90678 -12.65578 -12.34443 -12.20675 -12.10098 -11.90815 -11.70762 -11.49301 -11.30281 -10.71857 -10.55563 -10.46631 -10.30571 -8.55553 -8.05234 -6.16815 0.91786 1.39006 1.40731 1.50213 1.72691 2.44455 3.22052 3.80430 3.94646 4.10390 4.21744 4.25843 4.31271 4.64665 4.70547 4.84664 4.86546 4.94709 4.99989 5.07139 5.14226 5.29836 5.36214 5.39842 5.47229 5.61113 5.66991 5.70102 6.08726 6.21833 6.46675 6.95348 7.50713 8.99202 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042843 B = 0.009021 C = 0.008006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.394086 B = 3103.073639 C = 3496.352718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.046 3.954 3 H -0.006 1.006 4 C -0.518 4.518 5 H 0.049 0.951 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.271 1.271 12 C -0.063 4.063 13 H 0.052 0.948 14 C -0.120 4.120 15 C -0.123 4.123 16 C -0.049 4.049 17 S -0.317 6.317 18 C -0.068 4.068 19 C -0.095 4.095 20 H 0.020 0.980 21 H 0.049 0.951 22 H 0.037 0.963 23 H 0.258 0.742 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.542 -2.402 -12.856 13.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.028 3.972 3 H 0.012 0.988 4 C -0.556 4.556 5 H 0.067 0.933 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.196 1.196 12 C -0.082 4.082 13 H 0.071 0.929 14 C -0.157 4.157 15 C -0.162 4.162 16 C -0.196 4.196 17 S -0.091 6.091 18 C -0.216 4.216 19 C -0.135 4.135 20 H 0.040 0.960 21 H 0.068 0.932 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.139 0.861 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.060 0.940 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.768 -3.382 -12.733 13.463 hybrid contribution -0.055 0.959 1.460 1.747 sum 2.714 -2.424 -11.274 11.846 Atomic orbital electron populations 1.21702 0.98676 0.98460 0.99669 1.18722 0.92573 0.93884 0.92036 0.98813 1.21569 1.30202 1.11910 0.91956 0.93269 1.25692 0.95597 0.95812 1.01702 1.70016 1.38084 1.24356 1.23545 0.85763 0.78087 0.79233 0.79835 1.20321 1.21052 1.19573 1.20978 0.93855 0.98583 0.94740 0.92937 1.21670 1.01042 0.97711 0.95311 1.20504 0.99036 0.99028 0.97625 1.22325 0.95182 1.03247 0.98825 1.86786 1.41545 1.21978 1.58823 1.23266 1.01725 0.98416 0.98167 1.21653 0.96120 1.00748 0.94966 0.96049 0.93235 0.94420 0.93296 0.91687 0.91494 0.92437 0.89773 0.86119 0.88602 0.87831 0.89004 0.94040 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.14 8.71 71.98 0.63 -5.52 16 2 C 0.05 2.29 1.72 -11.54 -0.02 2.27 16 3 H -0.01 -0.34 8.10 -2.39 -0.02 -0.36 16 4 C -0.52 -28.58 7.97 25.60 0.20 -28.38 16 5 H 0.05 2.71 6.82 -2.91 -0.02 2.69 16 6 C 0.01 0.55 5.30 84.66 0.45 0.99 16 7 N -0.92 -53.84 11.32 21.45 0.24 -53.60 16 8 Si 0.94 44.52 29.54 68.60 2.03 46.54 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 12 C -0.06 -2.48 1.38 -11.26 -0.02 -2.50 16 13 H 0.05 2.23 6.84 -2.39 -0.02 2.21 16 14 C -0.12 -3.80 5.03 30.20 0.15 -3.65 16 15 C -0.12 -3.16 4.99 28.33 0.14 -3.02 16 16 C -0.05 -1.07 6.06 69.66 0.42 -0.65 16 17 S -0.32 -9.06 21.56 -56.49 -1.22 -10.28 16 18 C -0.07 -1.94 5.60 72.25 0.40 -1.53 16 19 C -0.10 -3.51 4.51 30.86 0.14 -3.37 16 20 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.05 2.69 6.07 -2.38 -0.01 2.67 16 22 H 0.04 1.56 6.10 -2.39 -0.01 1.55 16 23 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 24 H 0.06 1.88 6.24 -2.39 -0.01 1.87 16 25 H 0.07 2.24 5.63 -2.39 -0.01 2.22 16 26 H 0.06 1.70 6.99 -2.39 -0.02 1.68 16 27 H 0.08 1.78 8.13 -2.39 -0.02 1.76 16 28 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.10 2.72 8.14 -2.53 -0.02 2.69 16 31 H 0.09 2.30 7.06 -2.53 -0.02 2.28 16 32 H 0.04 1.69 7.19 -2.38 -0.02 1.67 16 33 H 0.05 1.97 7.91 -2.39 -0.02 1.95 16 Total: -1.00 -60.25 258.97 4.62 -55.63 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.07 Total: 7.06 kcal Atomic # 6 Polarization: -47.86 SS G_CDS: 2.50 Total: -45.36 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.24 Total: -53.60 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.22 Total: -10.28 kcal Total: -60.25 4.62 -55.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938689.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.738 kcal (2) G-P(sol) polarization free energy of solvation -60.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds