Wall clock time and date at job start Mon Mar 30 2020 02:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47170 * 2 1 4 4 C 1.50701 * 109.46849 * 119.99115 * 2 1 3 5 5 H 1.08003 * 119.99830 * 95.12934 * 4 2 1 6 6 C 1.37877 * 120.00497 * 275.12500 * 4 2 1 7 7 N 1.31516 * 119.99783 * 355.38488 * 6 4 2 8 8 Si 1.86793 * 120.00172 * 175.38528 * 6 4 2 9 9 H 1.48494 * 109.47439 * 89.99914 * 8 6 4 10 10 H 1.48498 * 109.47052 * 210.00290 * 8 6 4 11 11 H 1.48502 * 109.47200 * 330.00073 * 8 6 4 12 12 C 1.52995 * 109.47762 * 239.99625 * 2 1 3 13 13 H 1.08999 * 108.19111 * 300.00330 * 12 2 1 14 14 C 1.53075 * 108.29717 * 182.83054 * 12 2 1 15 15 C 1.51665 * 104.89400 * 143.76075 * 14 12 2 16 16 C 1.54629 * 108.98172 * 105.60353 * 15 14 12 17 17 S 1.82325 * 110.94009 * 320.76214 * 16 15 14 18 18 C 1.79266 * 106.80622 * 319.08354 * 17 16 15 19 19 C 1.44819 * 108.29150 * 57.16738 * 12 2 1 20 20 H 1.09002 * 109.46745 * 173.18460 * 1 2 3 21 21 H 1.08998 * 109.47937 * 293.19046 * 1 2 3 22 22 H 1.09008 * 109.46771 * 53.19032 * 1 2 3 23 23 H 0.97000 * 119.99989 * 5.38015 * 7 6 4 24 24 H 1.09004 * 110.32122 * 262.75620 * 14 12 2 25 25 H 1.09001 * 110.32260 * 25.00493 * 14 12 2 26 26 H 1.09000 * 109.58361 * 345.76291 * 15 14 12 27 27 H 1.09001 * 109.66668 * 225.49641 * 15 14 12 28 28 H 1.08993 * 109.17984 * 200.38355 * 16 15 14 29 29 H 1.08998 * 109.14193 * 81.11488 * 16 15 14 30 30 H 1.09000 * 109.42910 * 328.58473 * 18 17 16 31 31 H 1.08997 * 109.39911 * 208.69845 * 18 17 16 32 32 H 1.08998 * 109.31413 * 305.91118 * 19 12 2 33 33 H 1.08998 * 109.30587 * 65.51213 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7102 1.2306 5 1 2.2911 -1.7577 1.1817 6 6 2.1615 -0.0230 2.4189 7 7 1.9337 1.2717 2.4578 8 14 2.6601 -0.9307 3.9734 9 1 4.1399 -0.9255 4.0967 10 1 2.0627 -0.2561 5.1537 11 1 2.1740 -2.3323 3.9057 12 6 2.0401 -0.7213 -1.2491 13 1 1.6654 -1.7446 -1.2280 14 6 3.5689 -0.7680 -1.1864 15 6 3.9426 -2.1115 -1.7826 16 6 4.5176 -1.8900 -3.2008 17 16 3.5952 -0.5870 -4.0817 18 6 1.8602 -0.8355 -3.7054 19 6 1.4888 -0.0593 -2.4132 20 1 -0.3633 -1.0204 -0.1220 21 1 -0.3635 0.4047 0.9446 22 1 -0.3633 0.6158 -0.8229 23 1 1.5997 1.7293 1.6704 24 1 3.9968 0.0432 -1.7755 25 1 3.9074 -0.7061 -0.1522 26 1 3.0566 -2.7435 -1.8432 27 1 4.6928 -2.5947 -1.1566 28 1 4.4494 -2.8205 -3.7643 29 1 5.5641 -1.5960 -3.1204 30 1 1.6700 -1.8985 -3.5572 31 1 1.2540 -0.4707 -4.5345 32 1 0.4038 -0.0117 -2.3208 33 1 1.8898 0.9522 -2.4762 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259938699.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:36 Heat of formation + Delta-G solvation = -26.066291 kcal Electronic energy + Delta-G solvation = -13178.212143 eV Core-core repulsion = 11136.084445 eV Total energy + Delta-G solvation = -2042.127698 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.18852 -33.85076 -32.54213 -30.16636 -27.75365 -24.82933 -24.32130 -21.77092 -20.67098 -19.29419 -16.59998 -16.16915 -14.67025 -14.49535 -14.10766 -13.71972 -13.57577 -13.19655 -12.96352 -12.10961 -11.75705 -11.45663 -11.27781 -11.15016 -10.90908 -10.74824 -10.58904 -10.16398 -10.10742 -9.91644 -9.57643 -9.38313 -8.90901 -8.40077 -8.22314 -7.25857 -6.28352 -3.97508 1.95487 2.93533 3.43640 3.47341 3.62473 4.55610 5.06125 5.14735 5.16813 5.31948 5.44031 5.53458 5.61705 5.78875 5.92568 6.08929 6.18145 6.23813 6.48260 6.57407 6.62417 6.74806 6.76398 6.98257 7.09278 7.16022 7.34107 7.55256 7.71937 8.32827 8.50730 8.95849 9.72872 11.10179 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.041854 B = 0.009402 C = 0.008282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.835266 B = 2977.382131 C = 3380.148894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.026 3.974 3 H 0.031 0.969 4 C -0.582 4.582 5 H 0.046 0.954 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 1.064 2.936 9 H -0.289 1.289 10 H -0.286 1.286 11 H -0.290 1.290 12 C -0.080 4.080 13 H 0.047 0.953 14 C -0.119 4.119 15 C -0.121 4.121 16 C -0.078 4.078 17 S -0.272 6.272 18 C -0.086 4.086 19 C -0.106 4.106 20 H 0.032 0.968 21 H 0.043 0.957 22 H 0.019 0.981 23 H 0.270 0.730 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 -5.221 -10.003 11.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.007 3.993 3 H 0.049 0.951 4 C -0.620 4.620 5 H 0.064 0.936 6 C -0.186 4.186 7 N -0.553 5.553 8 Si 0.893 3.107 9 H -0.216 1.216 10 H -0.212 1.212 11 H -0.216 1.216 12 C -0.099 4.099 13 H 0.065 0.935 14 C -0.157 4.157 15 C -0.160 4.160 16 C -0.226 4.226 17 S -0.046 6.046 18 C -0.235 4.235 19 C -0.145 4.145 20 H 0.051 0.949 21 H 0.062 0.938 22 H 0.038 0.962 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.627 -4.264 -9.041 10.336 hybrid contribution -1.019 -1.337 -0.830 1.875 sum 1.608 -5.601 -9.871 11.463 Atomic orbital electron populations 1.22027 1.00186 0.98539 0.98750 1.19039 0.91037 0.96564 0.92648 0.95123 1.21897 1.47327 0.97719 0.95076 0.93553 1.25713 0.95307 0.96147 1.01455 1.70747 1.42529 1.08324 1.33682 0.83615 0.76468 0.74738 0.75852 1.21578 1.21176 1.21644 1.19847 0.95214 0.99253 0.95537 0.93510 1.21793 0.95944 0.95043 1.02916 1.22152 1.00700 0.99932 0.93231 1.23994 1.01259 0.98548 0.98842 1.85845 1.05761 1.47542 1.65406 1.23636 0.93815 1.03675 1.02327 1.20849 1.01170 0.99577 0.92878 0.94906 0.93803 0.96182 0.91814 0.90935 0.88899 0.91959 0.91488 0.90999 0.88532 0.90456 0.88808 0.91075 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.45 37.16 0.31 -2.77 16 2 C 0.03 0.62 1.57 -91.78 -0.14 0.47 16 3 H 0.03 0.81 6.68 -51.93 -0.35 0.46 16 4 C -0.58 -15.60 6.56 -34.44 -0.23 -15.83 16 5 H 0.05 1.25 7.81 -52.48 -0.41 0.84 16 6 C 0.02 0.49 5.45 -17.82 -0.10 0.39 16 7 N -0.92 -27.32 13.62 55.43 0.76 -26.56 16 8 Si 1.06 25.06 29.91 -169.99 -5.08 19.97 16 9 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 C -0.08 -1.59 1.16 -94.41 -0.11 -1.70 16 13 H 0.05 0.95 6.68 -51.93 -0.35 0.61 16 14 C -0.12 -2.29 5.08 -27.37 -0.14 -2.43 16 15 C -0.12 -1.93 5.71 -26.55 -0.15 -2.08 16 16 C -0.08 -1.08 6.60 38.01 0.25 -0.83 16 17 S -0.27 -4.14 20.07 -107.50 -2.16 -6.30 16 18 C -0.09 -1.27 5.94 38.35 0.23 -1.04 16 19 C -0.11 -1.82 4.47 -29.37 -0.13 -1.95 16 20 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 22 H 0.02 0.39 6.58 -51.92 -0.34 0.05 16 23 H 0.27 8.04 6.66 -40.82 -0.27 7.77 16 24 H 0.07 1.39 6.22 -51.93 -0.32 1.06 16 25 H 0.09 2.08 6.41 -51.93 -0.33 1.75 16 26 H 0.06 1.01 6.54 -51.93 -0.34 0.67 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.11 7.88 -51.76 -0.41 0.70 16 31 H 0.09 1.22 8.14 -51.75 -0.42 0.80 16 32 H 0.07 1.20 5.88 -51.93 -0.31 0.90 16 33 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 LS Contribution 260.18 15.07 3.92 3.92 Total: -1.00 -28.31 260.18 -7.95 -36.26 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.18 Total: 0.48 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: -0.21 Total: -27.77 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.76 Total: -26.56 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.08 Total: 19.97 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -2.16 Total: -6.30 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.31 -7.95 -36.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938699.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.189 kcal (2) G-P(sol) polarization free energy of solvation -28.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds