Wall clock time and date at job start Mon Mar 30 2020 02:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47170 * 2 1 4 4 C 1.50701 * 109.46849 * 119.99115 * 2 1 3 5 5 H 1.08003 * 119.99830 * 95.12934 * 4 2 1 6 6 C 1.37877 * 120.00497 * 275.12500 * 4 2 1 7 7 N 1.31516 * 119.99783 * 355.38488 * 6 4 2 8 8 Si 1.86793 * 120.00172 * 175.38528 * 6 4 2 9 9 H 1.48494 * 109.47439 * 89.99914 * 8 6 4 10 10 H 1.48498 * 109.47052 * 210.00290 * 8 6 4 11 11 H 1.48502 * 109.47200 * 330.00073 * 8 6 4 12 12 C 1.52995 * 109.47762 * 239.99625 * 2 1 3 13 13 H 1.08999 * 108.19111 * 300.00330 * 12 2 1 14 14 C 1.53075 * 108.29717 * 182.83054 * 12 2 1 15 15 C 1.51665 * 104.89400 * 143.76075 * 14 12 2 16 16 C 1.54629 * 108.98172 * 105.60353 * 15 14 12 17 17 S 1.82325 * 110.94009 * 320.76214 * 16 15 14 18 18 C 1.79266 * 106.80622 * 319.08354 * 17 16 15 19 19 C 1.44819 * 108.29150 * 57.16738 * 12 2 1 20 20 H 1.09002 * 109.46745 * 173.18460 * 1 2 3 21 21 H 1.08998 * 109.47937 * 293.19046 * 1 2 3 22 22 H 1.09008 * 109.46771 * 53.19032 * 1 2 3 23 23 H 0.97000 * 119.99989 * 5.38015 * 7 6 4 24 24 H 1.09004 * 110.32122 * 262.75620 * 14 12 2 25 25 H 1.09001 * 110.32260 * 25.00493 * 14 12 2 26 26 H 1.09000 * 109.58361 * 345.76291 * 15 14 12 27 27 H 1.09001 * 109.66668 * 225.49641 * 15 14 12 28 28 H 1.08993 * 109.17984 * 200.38355 * 16 15 14 29 29 H 1.08998 * 109.14193 * 81.11488 * 16 15 14 30 30 H 1.09000 * 109.42910 * 328.58473 * 18 17 16 31 31 H 1.08997 * 109.39911 * 208.69845 * 18 17 16 32 32 H 1.08998 * 109.31413 * 305.91118 * 19 12 2 33 33 H 1.08998 * 109.30587 * 65.51213 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7102 1.2306 5 1 2.2911 -1.7577 1.1817 6 6 2.1615 -0.0230 2.4189 7 7 1.9337 1.2717 2.4578 8 14 2.6601 -0.9307 3.9734 9 1 4.1399 -0.9255 4.0967 10 1 2.0627 -0.2561 5.1537 11 1 2.1740 -2.3323 3.9057 12 6 2.0401 -0.7213 -1.2491 13 1 1.6654 -1.7446 -1.2280 14 6 3.5689 -0.7680 -1.1864 15 6 3.9426 -2.1115 -1.7826 16 6 4.5176 -1.8900 -3.2008 17 16 3.5952 -0.5870 -4.0817 18 6 1.8602 -0.8355 -3.7054 19 6 1.4888 -0.0593 -2.4132 20 1 -0.3633 -1.0204 -0.1220 21 1 -0.3635 0.4047 0.9446 22 1 -0.3633 0.6158 -0.8229 23 1 1.5997 1.7293 1.6704 24 1 3.9968 0.0432 -1.7755 25 1 3.9074 -0.7061 -0.1522 26 1 3.0566 -2.7435 -1.8432 27 1 4.6928 -2.5947 -1.1566 28 1 4.4494 -2.8205 -3.7643 29 1 5.5641 -1.5960 -3.1204 30 1 1.6700 -1.8985 -3.5572 31 1 1.2540 -0.4707 -4.5345 32 1 0.4038 -0.0117 -2.3208 33 1 1.8898 0.9522 -2.4762 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259938699.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:36 Heat of formation + Delta-G solvation = -40.628575 kcal Electronic energy + Delta-G solvation = -13178.843611 eV Core-core repulsion = 11136.084445 eV Total energy + Delta-G solvation = -2042.759166 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.80093 -35.64449 -34.06310 -31.90750 -29.23636 -26.77875 -25.79557 -23.40381 -22.18753 -20.97082 -18.64137 -17.45287 -16.19485 -15.85549 -15.63285 -15.43236 -15.25398 -14.68914 -14.30792 -13.67706 -13.28847 -13.19747 -13.04056 -12.69292 -12.57619 -12.47859 -12.06455 -11.96236 -11.75591 -11.44693 -11.25692 -10.78635 -10.50868 -10.43579 -10.29909 -8.51566 -8.45833 -6.19138 0.81076 1.52087 1.60359 1.76577 1.78654 2.59861 3.28033 3.72607 3.87034 3.95183 4.12649 4.19044 4.36328 4.46817 4.61466 4.67649 4.74885 4.80105 4.87736 4.92250 5.06004 5.08757 5.18664 5.29860 5.37032 5.46798 5.62995 5.74928 5.88296 6.22260 6.33245 6.77089 7.58279 8.88087 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.041854 B = 0.009402 C = 0.008282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.835266 B = 2977.382131 C = 3380.148894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.019 3.981 3 H -0.003 1.003 4 C -0.579 4.579 5 H 0.043 0.957 6 C -0.036 4.036 7 N -0.947 5.947 8 Si 1.107 2.893 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.272 1.272 12 C -0.067 4.067 13 H 0.046 0.954 14 C -0.116 4.116 15 C -0.116 4.116 16 C -0.069 4.069 17 S -0.295 6.295 18 C -0.075 4.075 19 C -0.104 4.104 20 H 0.043 0.957 21 H 0.014 0.986 22 H 0.046 0.954 23 H 0.257 0.743 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.068 -6.922 -11.277 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.000 4.000 3 H 0.016 0.984 4 C -0.618 4.618 5 H 0.061 0.939 6 C -0.234 4.234 7 N -0.585 5.585 8 Si 0.930 3.070 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.197 1.197 12 C -0.085 4.085 13 H 0.064 0.936 14 C -0.154 4.154 15 C -0.155 4.155 16 C -0.217 4.217 17 S -0.068 6.068 18 C -0.224 4.224 19 C -0.143 4.143 20 H 0.062 0.938 21 H 0.033 0.967 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.846 -5.979 -10.339 12.278 hybrid contribution -1.086 -0.796 -0.464 1.424 sum 1.760 -6.775 -10.803 12.873 Atomic orbital electron populations 1.21873 0.98920 0.99471 0.98254 1.19089 0.92070 0.94910 0.93935 0.98432 1.22203 1.45938 0.97520 0.96090 0.93910 1.27019 0.95344 0.96168 1.04828 1.70868 1.44988 1.09459 1.33228 0.83055 0.76892 0.74498 0.72513 1.20276 1.21515 1.19703 1.19758 0.95513 0.98647 0.94603 0.93561 1.21657 0.95570 0.97359 1.00841 1.22019 1.01190 0.97600 0.94663 1.23987 1.01318 0.99136 0.97259 1.85997 1.06561 1.48755 1.65512 1.23557 0.93656 1.03813 1.01331 1.20746 1.01240 0.99011 0.93338 0.93817 0.96710 0.93557 0.93237 0.91094 0.92706 0.91859 0.90594 0.88521 0.87425 0.89444 0.86587 0.90500 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 8.45 71.98 0.61 -5.10 16 2 C 0.02 0.91 1.57 -11.54 -0.02 0.89 16 3 H 0.00 -0.14 6.68 -2.39 -0.02 -0.16 16 4 C -0.58 -31.42 6.56 25.60 0.17 -31.26 16 5 H 0.04 2.31 7.81 -2.91 -0.02 2.28 16 6 C -0.04 -2.07 5.45 84.65 0.46 -1.61 16 7 N -0.95 -58.13 13.62 21.45 0.29 -57.84 16 8 Si 1.11 50.59 29.91 68.60 2.05 52.64 16 9 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 C -0.07 -2.59 1.16 -13.25 -0.02 -2.61 16 13 H 0.05 1.80 6.68 -2.39 -0.02 1.79 16 14 C -0.12 -4.41 5.08 30.18 0.15 -4.26 16 15 C -0.12 -3.43 5.71 30.71 0.18 -3.25 16 16 C -0.07 -1.70 6.60 72.54 0.48 -1.22 16 17 S -0.30 -8.24 20.07 -56.49 -1.13 -9.38 16 18 C -0.08 -2.00 5.94 72.75 0.43 -1.57 16 19 C -0.10 -3.43 4.47 28.89 0.13 -3.30 16 20 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 21 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.05 1.80 6.58 -2.38 -0.02 1.78 16 23 H 0.26 15.99 6.66 -92.71 -0.62 15.37 16 24 H 0.07 2.69 6.22 -2.39 -0.01 2.67 16 25 H 0.05 2.49 6.41 -2.39 -0.02 2.47 16 26 H 0.06 1.87 6.54 -2.39 -0.02 1.86 16 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.09 2.18 7.88 -2.50 -0.02 2.16 16 31 H 0.12 2.60 8.14 -2.50 -0.02 2.58 16 32 H 0.08 2.43 5.88 -2.39 -0.01 2.42 16 33 H 0.05 1.92 8.09 -2.39 -0.02 1.90 16 Total: -1.00 -61.50 260.18 5.00 -56.50 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.22 Total: 11.36 kcal Atomic # 6 Polarization: -55.85 SS G_CDS: 2.57 Total: -53.28 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.29 Total: -57.84 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.05 Total: 52.64 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.13 Total: -9.38 kcal Total: -61.50 5.00 -56.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938699.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.868 kcal (2) G-P(sol) polarization free energy of solvation -61.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds