Wall clock time and date at job start Mon Mar 30 2020 02:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46969 * 2 1 4 4 C 1.50705 * 109.47084 * 240.00289 * 2 1 3 5 5 H 1.08002 * 119.99539 * 239.99979 * 4 2 1 6 6 C 1.37875 * 119.99897 * 60.00253 * 4 2 1 7 7 N 1.31517 * 120.00004 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99839 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47128 * 59.99902 * 8 6 4 10 10 H 1.48504 * 109.47136 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47106 * 299.99813 * 8 6 4 12 12 C 1.52994 * 109.46976 * 120.00163 * 2 1 3 13 13 H 1.09006 * 108.59049 * 58.81040 * 12 2 1 14 14 C 1.44526 * 108.73009 * 176.95578 * 12 2 1 15 15 C 1.53859 * 113.23671 * 186.74741 * 14 12 2 16 16 C 1.50754 * 108.73153 * 273.49889 * 15 14 12 17 17 S 1.82571 * 110.99487 * 95.73725 * 16 15 14 18 18 C 1.82400 * 105.10864 * 319.42194 * 17 16 15 19 19 C 1.50759 * 111.08218 * 319.08824 * 18 17 16 20 20 H 1.08998 * 109.46819 * 186.74977 * 1 2 3 21 21 H 1.08998 * 109.47519 * 306.75360 * 1 2 3 22 22 H 1.09003 * 109.47240 * 66.75346 * 1 2 3 23 23 H 0.96998 * 119.99877 * 180.02562 * 7 6 4 24 24 H 1.09005 * 108.73033 * 65.77861 * 14 12 2 25 25 H 1.08997 * 108.63425 * 307.64656 * 14 12 2 26 26 H 1.09000 * 109.61983 * 33.32164 * 15 14 12 27 27 H 1.09009 * 109.61686 * 153.68098 * 15 14 12 28 28 H 1.09002 * 109.15841 * 216.41232 * 16 15 14 29 29 H 1.08995 * 109.15928 * 335.58458 * 16 15 14 30 30 H 1.09001 * 109.15797 * 198.68051 * 18 17 16 31 31 H 1.08995 * 109.16005 * 79.49690 * 18 17 16 32 32 H 1.09001 * 109.62580 * 336.18146 * 19 18 17 33 33 H 1.09003 * 109.76804 * 215.72621 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8281 -2.5196 -4.0083 10 1 1.8270 -0.4196 -5.2205 11 1 3.8075 -1.1187 -4.0078 12 6 2.0400 -0.7213 1.2492 13 1 1.6513 -1.7397 1.2454 14 6 3.4833 -0.7752 1.1972 15 6 4.0999 -1.6241 2.3226 16 6 4.2873 -0.7532 3.5388 17 16 2.8798 -0.9241 4.6889 18 6 1.4002 -0.9851 3.6239 19 6 1.5042 0.0074 2.4938 20 1 -0.3633 -1.0205 0.1208 21 1 -0.3634 0.6149 0.8233 22 1 -0.3634 0.4056 -0.9443 23 1 0.7082 1.1611 -3.4843 24 1 3.8743 0.2397 1.2700 25 1 3.7817 -1.1966 0.2374 26 1 3.4329 -2.4516 2.5642 27 1 5.0651 -2.0144 1.9996 28 1 5.2075 -1.0417 4.0469 29 1 4.3645 0.2877 3.2249 30 1 0.5189 -0.7545 4.2224 31 1 1.2983 -1.9884 3.2103 32 1 2.1890 0.8085 2.7720 33 1 0.5207 0.4250 2.2783 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259938713.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:37 Heat of formation + Delta-G solvation = -37.675756 kcal Electronic energy + Delta-G solvation = -13105.327374 eV Core-core repulsion = 11062.696252 eV Total energy + Delta-G solvation = -2042.631122 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.77953 -35.58730 -33.85481 -32.21671 -29.54694 -27.16726 -25.55530 -23.13951 -21.92445 -20.79462 -18.38362 -17.63137 -16.75927 -16.01628 -15.36285 -15.26162 -14.92680 -14.44946 -14.13676 -13.91405 -13.49230 -13.21701 -12.88993 -12.72240 -12.62131 -12.30597 -12.06256 -11.99650 -11.67243 -11.62222 -11.26678 -10.79056 -10.58197 -10.38859 -10.34306 -8.62457 -8.05525 -6.18095 0.85130 1.41611 1.42022 1.49164 1.67128 2.44086 3.21667 3.76077 3.90453 4.04956 4.15086 4.28191 4.37143 4.60127 4.71745 4.76565 4.87042 4.92492 4.94563 5.03415 5.07831 5.24555 5.29964 5.43040 5.48083 5.58021 5.65242 5.73968 6.03509 6.23771 6.43311 6.93824 7.49513 8.98585 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.049329 B = 0.008461 C = 0.007573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.480548 B = 3308.595340 C = 3696.469901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.045 3.955 3 H -0.009 1.009 4 C -0.520 4.520 5 H 0.058 0.942 6 C 0.009 3.991 7 N -0.920 5.920 8 Si 0.947 3.053 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.271 1.271 12 C -0.069 4.069 13 H 0.050 0.950 14 C -0.109 4.109 15 C -0.115 4.115 16 C -0.061 4.061 17 S -0.317 6.317 18 C -0.058 4.058 19 C -0.116 4.116 20 H 0.026 0.974 21 H 0.033 0.967 22 H 0.051 0.949 23 H 0.258 0.742 24 H 0.046 0.954 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.026 -3.739 10.368 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.026 3.974 3 H 0.009 0.991 4 C -0.558 4.558 5 H 0.076 0.924 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.773 3.227 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.197 1.197 12 C -0.087 4.087 13 H 0.068 0.932 14 C -0.146 4.146 15 C -0.154 4.154 16 C -0.209 4.209 17 S -0.092 6.092 18 C -0.206 4.206 19 C -0.154 4.154 20 H 0.045 0.955 21 H 0.051 0.949 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.134 0.866 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.987 -3.682 11.321 12.555 hybrid contribution -0.001 -0.045 -2.473 2.474 sum 3.986 -3.728 8.848 10.395 Atomic orbital electron populations 1.21752 0.98833 0.98174 1.00190 1.18723 0.92581 0.94029 0.92025 0.99079 1.21588 1.30360 1.12155 0.91716 0.92400 1.25719 0.95590 0.95781 1.01841 1.70019 1.38004 1.24367 1.23660 0.85787 0.78847 0.78810 0.79274 1.19789 1.21393 1.19667 1.19771 0.95910 0.98530 0.94527 0.93196 1.20291 0.95839 0.99435 0.99060 1.21601 1.02199 0.97820 0.93744 1.23260 0.96997 1.03309 0.97338 1.86612 1.05002 1.97366 1.20262 1.23181 0.96242 1.02719 0.98456 1.21725 1.02493 0.97513 0.93713 0.95518 0.94854 0.93057 0.93298 0.93546 0.92144 0.91432 0.89393 0.86601 0.90218 0.87334 0.89935 0.91953 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.23 8.59 71.98 0.62 -5.61 16 2 C 0.04 2.16 1.86 -11.54 -0.02 2.14 16 3 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 4 C -0.52 -27.62 7.67 25.60 0.20 -27.42 16 5 H 0.06 2.99 6.43 -2.91 -0.02 2.97 16 6 C 0.01 0.47 5.28 84.65 0.45 0.91 16 7 N -0.92 -53.17 11.29 21.45 0.24 -52.93 16 8 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 C -0.07 -2.62 1.24 -13.07 -0.02 -2.63 16 13 H 0.05 1.94 7.22 -2.38 -0.02 1.92 16 14 C -0.11 -3.83 4.27 28.33 0.12 -3.71 16 15 C -0.12 -3.12 5.57 30.15 0.17 -2.95 16 16 C -0.06 -1.52 5.79 71.25 0.41 -1.11 16 17 S -0.32 -8.60 21.98 -56.49 -1.24 -9.84 16 18 C -0.06 -1.61 5.76 71.25 0.41 -1.19 16 19 C -0.12 -3.76 4.92 30.15 0.15 -3.61 16 20 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.03 1.38 6.23 -2.39 -0.01 1.36 16 22 H 0.05 2.76 5.92 -2.39 -0.01 2.74 16 23 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 24 H 0.05 1.67 7.23 -2.38 -0.02 1.65 16 25 H 0.06 2.40 5.82 -2.39 -0.01 2.39 16 26 H 0.07 1.87 6.96 -2.39 -0.02 1.86 16 27 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.08 2.06 6.87 -2.39 -0.02 2.05 16 30 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.08 2.29 6.85 -2.39 -0.02 2.27 16 32 H 0.06 2.04 6.98 -2.39 -0.02 2.02 16 33 H 0.08 2.59 5.58 -2.39 -0.01 2.57 16 Total: -1.00 -57.37 256.21 4.59 -52.78 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 1.08 Total: 9.92 kcal Atomic # 6 Polarization: -47.66 SS G_CDS: 2.48 Total: -45.18 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.24 Total: -52.93 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.24 Total: -9.84 kcal Total: -57.37 4.59 -52.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938713.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.103 kcal (2) G-P(sol) polarization free energy of solvation -57.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds