Wall clock time and date at job start Mon Mar 30 2020 02:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34635 * 116.99531 * 2 1 4 4 O 1.21517 * 120.00303 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00103 * 179.97438 * 3 2 1 6 6 C 1.47579 * 134.49439 * 180.02562 * 5 3 2 7 7 C 1.53950 * 86.11621 * 204.63969 * 6 5 3 8 8 C 1.53004 * 113.73988 * 221.94050 * 7 6 5 9 9 N 1.46501 * 109.46877 * 183.07251 * 8 7 6 10 10 C 1.36937 * 119.99971 * 179.97438 * 9 8 7 11 11 H 1.07995 * 119.99656 * 0.02562 * 10 9 8 12 12 C 1.38813 * 119.99740 * 179.97438 * 10 9 8 13 13 N 1.31613 * 120.00273 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99378 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47224 * 90.00716 * 14 12 10 16 16 H 1.48503 * 109.46923 * 210.00370 * 14 12 10 17 17 H 1.48491 * 109.47337 * 330.00141 * 14 12 10 18 18 C 1.47925 * 134.49772 * 0.02562 * 5 3 2 19 19 H 1.09000 * 109.46445 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47085 * 299.99785 * 1 2 3 21 21 H 1.08995 * 109.47099 * 60.00326 * 1 2 3 22 22 H 1.09003 * 113.77049 * 90.34034 * 6 5 3 23 23 H 1.08993 * 113.77081 * 318.93795 * 6 5 3 24 24 H 1.09002 * 113.74276 * 90.74001 * 7 6 5 25 25 H 1.08998 * 109.46823 * 303.07465 * 8 7 6 26 26 H 1.08998 * 109.46745 * 63.07477 * 8 7 6 27 27 H 0.97000 * 119.99767 * 0.02562 * 9 8 7 28 28 H 0.97005 * 119.99720 * 179.97438 * 13 12 10 29 29 H 1.09006 * 113.87423 * 41.10256 * 18 5 3 30 30 H 1.08997 * 113.77410 * 269.60428 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4013 2.2188 -0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.3868 2.3758 0.0012 7 6 5.3638 1.3730 -0.6391 8 6 6.7833 1.4491 -0.0733 9 7 7.6475 0.5119 -0.7951 10 6 8.9712 0.4051 -0.4611 11 1 9.3780 1.0114 0.3346 12 6 9.7900 -0.4834 -1.1447 13 7 9.2941 -1.2227 -2.1142 14 14 11.5956 -0.6296 -0.6886 15 1 11.7591 -1.6707 0.3576 16 1 12.3807 -1.0083 -1.8908 17 1 12.0823 0.6740 -0.1701 18 6 4.4998 0.2710 0.0007 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 4.6819 2.7008 0.9989 23 1 4.1147 3.2033 -0.6540 24 1 5.3401 1.3720 -1.7288 25 1 7.1675 2.4623 -0.1912 26 1 6.7672 1.1874 0.9847 27 1 7.2822 -0.0324 -1.5101 28 1 9.8664 -1.8432 -2.5921 29 1 4.3179 -0.5807 -0.6549 30 1 4.8280 -0.0210 0.9982 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259956690.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:44 Heat of formation + Delta-G solvation = -52.719688 kcal Electronic energy + Delta-G solvation = -13994.352866 eV Core-core repulsion = 11404.776175 eV Total energy + Delta-G solvation = -2589.576690 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.68792 -40.00755 -37.31494 -36.28843 -33.38717 -31.14056 -28.53097 -27.21681 -26.87182 -24.45965 -22.14693 -20.92251 -19.16761 -18.88705 -18.16049 -17.69190 -16.83493 -16.20661 -15.63086 -15.33184 -14.86598 -14.72922 -14.39322 -13.97162 -13.57358 -13.29019 -12.91307 -12.82357 -12.62320 -12.23952 -12.02531 -11.95300 -11.83522 -11.62407 -11.49185 -10.87363 -9.90438 -8.93667 -7.90243 -5.18263 0.98444 1.52941 1.53571 1.61951 1.65166 2.60467 2.79583 3.35144 3.46672 3.86193 4.00236 4.30168 4.33491 4.34397 4.39526 4.49931 4.58855 4.61572 4.65565 4.73429 4.98062 5.15639 5.26124 5.38745 5.56801 6.32242 6.52032 7.10106 7.39577 8.15671 8.37485 9.33366 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.073122 B = 0.005232 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.829172 B = 5350.271952 C = 5590.624529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.378 6.378 3 C 0.662 3.338 4 O -0.611 6.611 5 N -0.635 5.635 6 C 0.144 3.856 7 C -0.116 4.116 8 C 0.163 3.837 9 N -0.746 5.746 10 C -0.242 4.242 11 H 0.079 0.921 12 C -0.074 4.074 13 N -0.970 5.970 14 Si 0.970 3.030 15 H -0.288 1.288 16 H -0.299 1.299 17 H -0.269 1.269 18 C 0.120 3.880 19 H 0.135 0.865 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.111 0.889 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.034 0.966 26 H 0.037 0.963 27 H 0.375 0.625 28 H 0.250 0.750 29 H 0.084 0.916 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.321 3.255 5.169 14.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.291 6.291 3 C 0.418 3.582 4 O -0.504 6.504 5 N -0.377 5.377 6 C 0.024 3.976 7 C -0.136 4.136 8 C 0.037 3.963 9 N -0.389 5.389 10 C -0.374 4.374 11 H 0.097 0.903 12 C -0.267 4.267 13 N -0.621 5.621 14 Si 0.799 3.201 15 H -0.215 1.215 16 H -0.226 1.226 17 H -0.194 1.194 18 C -0.002 4.002 19 H 0.153 0.847 20 H 0.081 0.919 21 H 0.079 0.921 22 H 0.129 0.871 23 H 0.111 0.889 24 H 0.116 0.884 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.207 0.793 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.677 3.571 5.279 15.089 hybrid contribution 0.625 -0.444 -0.260 0.809 sum -13.052 3.127 5.019 14.329 Atomic orbital electron populations 1.23507 0.72726 1.05607 1.02602 1.86284 1.25868 1.30183 1.86768 1.17816 0.82211 0.82176 0.75980 1.90940 1.64574 1.36188 1.58676 1.48990 1.00306 1.13708 1.74697 1.23365 0.81085 0.90621 1.02544 1.23162 0.93487 0.95809 1.01119 1.20735 0.87550 0.93191 0.94849 1.42548 1.06793 1.47506 1.42018 1.19653 0.86922 1.17193 1.13643 0.90307 1.25511 1.02257 0.99771 0.99123 1.69805 1.36297 1.29358 1.26632 0.85189 0.80394 0.77984 0.76487 1.21511 1.22567 1.19380 1.23499 0.81153 0.93515 1.02023 0.84659 0.91863 0.92066 0.87082 0.88948 0.88363 0.94827 0.94557 0.79309 0.94110 0.89770 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.92 10.56 113.37 1.20 2.12 16 2 O -0.38 -10.34 10.56 -55.45 -0.59 -10.92 16 3 C 0.66 20.89 8.92 129.79 1.16 22.04 16 4 O -0.61 -22.19 16.86 19.79 0.33 -21.85 16 5 N -0.64 -18.03 3.62 -966.05 -3.49 -21.53 16 6 C 0.14 3.49 8.40 86.49 0.73 4.21 16 7 C -0.12 -3.26 3.93 -10.13 -0.04 -3.30 16 8 C 0.16 5.64 6.10 86.38 0.53 6.17 16 9 N -0.75 -35.18 5.60 -343.45 -1.92 -37.10 16 10 C -0.24 -12.87 9.99 84.03 0.84 -12.03 16 11 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 12 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 13 N -0.97 -57.84 13.06 21.65 0.28 -57.56 16 14 Si 0.97 44.79 29.55 68.60 2.03 46.81 16 15 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 16 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 17 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 18 C 0.12 3.23 8.45 86.42 0.73 3.96 16 19 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 20 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.11 2.25 8.10 -2.39 -0.02 2.23 16 23 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 24 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 25 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16 26 H 0.04 1.21 7.88 -2.39 -0.02 1.19 16 27 H 0.37 18.94 7.67 -92.71 -0.71 18.23 16 28 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 29 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 30 H 0.10 2.55 7.92 -2.39 -0.02 2.53 16 Total: -1.00 -67.92 267.11 2.67 -65.25 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.42 Total: 17.39 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 5.61 Total: 19.51 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -5.13 Total: -116.19 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.25 Total: -32.78 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -67.92 2.67 -65.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259956690.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.533 kcal (2) G-P(sol) polarization free energy of solvation -67.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds