Wall clock time and date at job start Mon Mar 30 2020 02:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47231 * 2 1 4 4 C 1.52996 * 109.47293 * 120.00436 * 2 1 3 5 5 C 1.52997 * 109.51007 * 64.67762 * 4 2 1 6 6 O 1.43758 * 109.63192 * 304.36098 * 4 2 1 7 7 C 1.44987 * 104.93289 * 215.94223 * 6 4 2 8 8 C 1.54921 * 101.62521 * 35.86968 * 7 6 4 9 9 H 1.08998 * 110.69391 * 83.14957 * 8 7 6 10 10 C 1.53004 * 110.69341 * 206.18345 * 8 7 6 11 11 C 1.50695 * 109.46637 * 182.62613 * 10 8 7 12 12 H 1.08004 * 120.00546 * 0.27598 * 11 10 8 13 13 C 1.37885 * 119.99721 * 179.97438 * 11 10 8 14 14 N 1.31516 * 119.99913 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47326 * 90.00142 * 15 13 11 17 17 H 1.48506 * 109.46545 * 209.99892 * 15 13 11 18 18 H 1.48498 * 109.47210 * 329.99603 * 15 13 11 19 19 O 1.43366 * 109.63408 * 185.00154 * 4 2 1 20 20 H 1.08993 * 109.47236 * 59.99776 * 1 2 3 21 21 H 1.09003 * 109.46864 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47101 * 299.99332 * 1 2 3 23 23 H 1.09004 * 109.46747 * 239.99982 * 2 1 3 24 24 H 1.08995 * 109.46890 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.47082 * 300.00639 * 3 2 1 26 26 H 1.09002 * 109.46533 * 60.00320 * 3 2 1 27 27 H 1.09006 * 109.47260 * 179.61620 * 5 4 2 28 28 H 1.08997 * 109.47348 * 299.61706 * 5 4 2 29 29 H 1.09005 * 109.46922 * 59.62058 * 5 4 2 30 30 H 1.09002 * 110.90069 * 277.85277 * 7 6 4 31 31 H 1.08993 * 111.14632 * 154.00407 * 7 6 4 32 32 H 1.08992 * 109.47421 * 62.62659 * 10 8 7 33 33 H 1.08997 * 109.46955 * 302.62112 * 10 8 7 34 34 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6289 -2.1939 1.1925 6 8 1.4806 -0.1085 2.4230 7 6 2.5340 -0.1743 3.4170 8 6 3.7975 0.0456 2.5479 9 1 3.9675 1.1086 2.3776 10 6 5.0220 -0.5981 3.2015 11 6 6.2444 -0.3130 2.3676 12 1 6.1575 0.2728 1.4645 13 6 7.4750 -0.7948 2.7610 14 7 8.5418 -0.5464 2.0331 15 14 7.6266 -1.8015 4.3272 16 1 7.4418 -3.2405 4.0106 17 1 8.9721 -1.5941 4.9206 18 1 6.5867 -1.3702 5.2956 19 8 3.4689 -0.6222 1.3130 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8901 23 1 1.8933 -0.5139 -0.8900 24 1 3.1300 1.4424 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9562 0.8901 27 1 1.9984 -2.7087 2.0795 28 1 0.5419 -2.2665 1.1567 29 1 2.0535 -2.6557 0.3011 30 1 2.5557 -1.1531 3.8964 31 1 2.4265 0.6186 4.1570 32 1 4.8727 -1.6755 3.2708 33 1 5.1596 -0.1853 4.2008 34 1 9.4074 -0.8857 2.3097 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260001047.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:15 Heat of formation + Delta-G solvation = -107.774083 kcal Electronic energy + Delta-G solvation = -15345.951753 eV Core-core repulsion = 12857.528068 eV Total energy + Delta-G solvation = -2488.423685 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.24640 -35.30036 -34.48086 -32.95424 -31.03847 -29.41613 -26.93276 -26.64659 -23.04823 -22.82201 -20.45749 -19.63007 -16.93249 -16.52861 -16.11508 -14.99760 -14.49242 -14.09691 -13.80448 -13.36605 -13.16877 -12.69794 -12.37703 -12.23182 -12.03958 -11.94352 -11.77491 -11.71450 -11.41898 -11.03917 -10.73991 -10.62362 -10.48993 -10.12482 -9.69644 -9.55979 -9.25311 -8.85261 -8.54722 -6.03276 -4.00902 3.29548 3.36724 3.37563 3.91524 4.38261 4.43908 4.96888 5.06109 5.22174 5.28408 5.32142 5.42997 5.61424 5.67865 5.70997 5.75209 5.84433 6.00819 6.03903 6.08318 6.12650 6.23462 6.33611 6.39268 6.51749 6.58174 6.66419 6.97436 7.21273 7.69434 7.82301 8.53600 9.03405 9.57253 11.10289 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.046606 B = 0.008403 C = 0.007916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.632089 B = 3331.430295 C = 3536.474085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C -0.144 4.144 4 C 0.253 3.747 5 C -0.170 4.170 6 O -0.379 6.379 7 C 0.014 3.986 8 C 0.073 3.927 9 H 0.077 0.923 10 C -0.013 4.013 11 C -0.511 4.511 12 H 0.075 0.925 13 C 0.066 3.934 14 N -0.902 5.902 15 Si 0.878 3.122 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.267 1.267 19 O -0.355 6.355 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.021 0.979 33 H 0.032 0.968 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.752 -0.001 -0.114 14.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C -0.201 4.201 4 C 0.175 3.825 5 C -0.228 4.228 6 O -0.300 6.300 7 C -0.063 4.063 8 C 0.016 3.984 9 H 0.095 0.905 10 C -0.050 4.050 11 C -0.549 4.549 12 H 0.094 0.906 13 C -0.135 4.135 14 N -0.541 5.541 15 Si 0.705 3.295 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.191 1.191 19 O -0.276 6.276 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.100 0.900 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.624 -0.019 -0.262 14.627 hybrid contribution 0.331 -0.650 0.918 1.173 sum -14.294 -0.670 0.656 14.324 Atomic orbital electron populations 1.21795 0.94580 1.01644 1.01884 1.21407 0.95970 0.97385 0.96684 1.21742 1.02267 0.94921 1.01200 1.23269 0.80581 0.91944 0.86682 1.22388 1.01538 0.95596 1.03257 1.89142 1.37517 1.81148 1.22147 1.24576 0.86512 1.02405 0.92783 1.23773 0.94745 0.97542 0.82326 0.90520 1.19744 0.92935 0.96170 0.96175 1.20982 0.90006 1.34138 1.09757 0.90642 1.25010 0.95813 0.95877 0.96774 1.69910 0.99193 1.46277 1.38686 0.86817 0.77427 0.81024 0.84226 1.20279 1.21293 1.19145 1.89035 1.18446 1.79464 1.40606 0.92818 0.92736 0.91948 0.90003 0.91533 0.93125 0.92529 0.92026 0.91258 0.91032 0.91274 0.88148 0.96068 0.95047 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.76 37.16 0.33 -1.39 16 2 C -0.10 -1.41 2.54 -90.62 -0.23 -1.64 16 3 C -0.14 -2.15 8.89 37.16 0.33 -1.82 16 4 C 0.25 4.29 0.73 -26.73 -0.02 4.27 16 5 C -0.17 -2.54 8.94 37.16 0.33 -2.21 16 6 O -0.38 -6.37 9.68 -59.04 -0.57 -6.94 16 7 C 0.01 0.23 7.39 38.17 0.28 0.51 16 8 C 0.07 1.50 3.59 -25.72 -0.09 1.41 16 9 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 10 C -0.01 -0.31 3.81 -27.88 -0.11 -0.41 16 11 C -0.51 -14.72 9.55 -34.44 -0.33 -15.05 16 12 H 0.08 2.38 7.99 -52.48 -0.42 1.96 16 13 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 15 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 19 O -0.35 -7.50 9.58 -59.04 -0.57 -8.07 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.61 6.57 -51.93 -0.34 0.26 16 22 H 0.06 0.80 7.58 -51.93 -0.39 0.40 16 23 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 24 H 0.07 1.14 7.57 -51.93 -0.39 0.75 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.85 7.81 -51.93 -0.41 0.44 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.88 6.58 -51.93 -0.34 0.54 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.11 8.04 -51.93 -0.42 0.69 16 31 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 33 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 273.31 15.07 4.12 4.12 Total: -1.00 -31.13 273.31 -6.12 -37.25 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.60 Total: -1.54 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 0.39 Total: -14.50 kcal Atomic # 7 Polarization: -28.04 SS G_CDS: 0.77 Total: -27.27 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -1.14 Total: -15.01 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.13 -6.12 -37.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001047.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.520 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds