Wall clock time and date at job start Mon Mar 30 2020 02:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47231 * 2 1 4 4 C 1.52996 * 109.47293 * 120.00436 * 2 1 3 5 5 C 1.52997 * 109.51007 * 64.67762 * 4 2 1 6 6 O 1.43758 * 109.63192 * 304.36098 * 4 2 1 7 7 C 1.44987 * 104.93289 * 215.94223 * 6 4 2 8 8 C 1.54921 * 101.62521 * 35.86968 * 7 6 4 9 9 H 1.08998 * 110.69391 * 83.14957 * 8 7 6 10 10 C 1.53004 * 110.69341 * 206.18345 * 8 7 6 11 11 C 1.50695 * 109.46637 * 182.62613 * 10 8 7 12 12 H 1.08004 * 120.00546 * 0.27598 * 11 10 8 13 13 C 1.37885 * 119.99721 * 179.97438 * 11 10 8 14 14 N 1.31516 * 119.99913 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47326 * 90.00142 * 15 13 11 17 17 H 1.48506 * 109.46545 * 209.99892 * 15 13 11 18 18 H 1.48498 * 109.47210 * 329.99603 * 15 13 11 19 19 O 1.43366 * 109.63408 * 185.00154 * 4 2 1 20 20 H 1.08993 * 109.47236 * 59.99776 * 1 2 3 21 21 H 1.09003 * 109.46864 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47101 * 299.99332 * 1 2 3 23 23 H 1.09004 * 109.46747 * 239.99982 * 2 1 3 24 24 H 1.08995 * 109.46890 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.47082 * 300.00639 * 3 2 1 26 26 H 1.09002 * 109.46533 * 60.00320 * 3 2 1 27 27 H 1.09006 * 109.47260 * 179.61620 * 5 4 2 28 28 H 1.08997 * 109.47348 * 299.61706 * 5 4 2 29 29 H 1.09005 * 109.46922 * 59.62058 * 5 4 2 30 30 H 1.09002 * 110.90069 * 277.85277 * 7 6 4 31 31 H 1.08993 * 111.14632 * 154.00407 * 7 6 4 32 32 H 1.08992 * 109.47421 * 62.62659 * 10 8 7 33 33 H 1.08997 * 109.46955 * 302.62112 * 10 8 7 34 34 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6289 -2.1939 1.1925 6 8 1.4806 -0.1085 2.4230 7 6 2.5340 -0.1743 3.4170 8 6 3.7975 0.0456 2.5479 9 1 3.9675 1.1086 2.3776 10 6 5.0220 -0.5981 3.2015 11 6 6.2444 -0.3130 2.3676 12 1 6.1575 0.2728 1.4645 13 6 7.4750 -0.7948 2.7610 14 7 8.5418 -0.5464 2.0331 15 14 7.6266 -1.8015 4.3272 16 1 7.4418 -3.2405 4.0106 17 1 8.9721 -1.5941 4.9206 18 1 6.5867 -1.3702 5.2956 19 8 3.4689 -0.6222 1.3130 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8901 23 1 1.8933 -0.5139 -0.8900 24 1 3.1300 1.4424 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9562 0.8901 27 1 1.9984 -2.7087 2.0795 28 1 0.5419 -2.2665 1.1567 29 1 2.0535 -2.6557 0.3011 30 1 2.5557 -1.1531 3.8964 31 1 2.4265 0.6186 4.1570 32 1 4.8727 -1.6755 3.2708 33 1 5.1596 -0.1853 4.2008 34 1 9.4074 -0.8857 2.3097 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260001047.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:14 Heat of formation + Delta-G solvation = -128.077886 kcal Electronic energy + Delta-G solvation = -15346.832192 eV Core-core repulsion = 12857.528068 eV Total energy + Delta-G solvation = -2489.304124 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.63426 -36.68471 -35.86176 -34.98048 -32.79940 -30.79936 -28.57686 -27.76382 -24.84120 -24.06448 -22.22136 -20.89925 -18.94438 -18.14365 -17.41481 -16.64553 -16.10898 -15.55685 -15.09317 -14.80840 -14.75356 -14.36342 -13.85403 -13.68363 -13.41344 -13.28848 -13.19264 -13.10800 -12.82488 -12.46829 -12.19419 -12.02872 -11.82124 -11.79758 -11.59235 -11.36454 -10.92136 -10.78441 -10.30838 -8.28594 -6.33004 1.35787 1.38041 1.49059 2.35686 2.56159 3.01472 3.12773 3.70897 3.76427 3.90740 4.07227 4.16248 4.25660 4.48364 4.53251 4.55721 4.67531 4.73057 4.80794 4.85081 4.97125 5.00255 5.05927 5.10163 5.13373 5.22490 5.39771 5.43438 5.48006 5.60409 6.24992 6.37383 6.73259 7.29259 8.88868 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.046606 B = 0.008403 C = 0.007916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.632089 B = 3331.430295 C = 3536.474085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 C -0.140 4.140 4 C 0.241 3.759 5 C -0.168 4.168 6 O -0.376 6.376 7 C 0.024 3.976 8 C 0.069 3.931 9 H 0.062 0.938 10 C -0.009 4.009 11 C -0.523 4.523 12 H 0.024 0.976 13 C 0.001 3.999 14 N -0.954 5.954 15 Si 0.954 3.046 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.237 1.237 19 O -0.389 6.389 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.057 0.943 23 H 0.081 0.919 24 H 0.031 0.969 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.025 0.975 33 H 0.050 0.950 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.954 -0.943 1.513 17.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 C -0.197 4.197 4 C 0.164 3.836 5 C -0.225 4.225 6 O -0.297 6.297 7 C -0.052 4.052 8 C 0.012 3.988 9 H 0.080 0.920 10 C -0.046 4.046 11 C -0.561 4.561 12 H 0.042 0.958 13 C -0.196 4.196 14 N -0.594 5.594 15 Si 0.776 3.224 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.160 1.160 19 O -0.311 6.311 20 H 0.090 0.910 21 H 0.086 0.914 22 H 0.076 0.924 23 H 0.099 0.901 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.147 0.853 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.860 -0.951 1.362 16.942 hybrid contribution 1.024 -0.295 0.278 1.102 sum -15.836 -1.246 1.640 15.969 Atomic orbital electron populations 1.21739 0.91962 1.02758 1.02578 1.21486 0.98060 0.96613 0.95643 1.21694 1.00011 0.95790 1.02225 1.23658 0.78720 0.93621 0.87569 1.22395 1.03223 0.93892 1.03016 1.89135 1.37163 1.81296 1.22104 1.24573 0.84068 1.04219 0.92378 1.23625 0.95588 0.96336 0.83231 0.91989 1.19664 0.92049 0.96629 0.96257 1.21266 0.92616 1.33369 1.08844 0.95772 1.26075 0.95119 0.97284 1.01083 1.70086 1.00028 1.48054 1.41267 0.85614 0.78328 0.78963 0.79478 1.19540 1.20865 1.15967 1.89003 1.21425 1.79557 1.41086 0.90968 0.91408 0.92405 0.90099 0.94941 0.90866 0.92709 0.92597 0.88603 0.91013 0.90000 0.85288 0.95700 0.93235 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.76 71.98 0.63 -2.21 16 2 C -0.10 -2.81 2.54 -10.79 -0.03 -2.83 16 3 C -0.14 -4.15 8.89 71.98 0.64 -3.51 16 4 C 0.24 7.89 0.73 30.59 0.02 7.91 16 5 C -0.17 -4.67 8.94 71.98 0.64 -4.02 16 6 O -0.38 -11.80 9.68 -126.22 -1.22 -13.02 16 7 C 0.02 0.73 7.39 72.64 0.54 1.27 16 8 C 0.07 2.84 3.59 31.25 0.11 2.95 16 9 H 0.06 2.65 8.14 -2.39 -0.02 2.64 16 10 C -0.01 -0.41 3.81 29.85 0.11 -0.29 16 11 C -0.52 -31.10 9.55 25.60 0.24 -30.85 16 12 H 0.02 1.62 7.99 -2.91 -0.02 1.60 16 13 C 0.00 0.04 5.47 84.66 0.46 0.50 16 14 N -0.95 -61.26 13.96 21.45 0.30 -60.96 16 15 Si 0.95 44.09 27.47 68.60 1.88 45.98 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.24 -9.73 6.54 99.48 0.65 -9.08 16 19 O -0.39 -16.68 9.58 -126.22 -1.21 -17.89 16 20 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.07 1.27 6.57 -2.39 -0.02 1.25 16 22 H 0.06 1.30 7.58 -2.39 -0.02 1.28 16 23 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.03 1.15 7.57 -2.39 -0.02 1.14 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.05 1.61 7.81 -2.39 -0.02 1.59 16 27 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.10 2.12 6.58 -2.39 -0.02 2.10 16 29 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.08 2.35 8.04 -2.39 -0.02 2.33 16 31 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.02 1.14 7.57 -2.39 -0.02 1.13 16 33 H 0.05 2.14 7.20 -2.39 -0.02 2.12 16 34 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -69.45 273.31 4.12 -65.33 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.99 Total: 11.66 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 3.38 Total: -31.10 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.30 Total: -60.96 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -2.43 Total: -30.91 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.98 kcal Total: -69.45 4.12 -65.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001047.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.750 kcal (2) G-P(sol) polarization free energy of solvation -69.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds