Wall clock time and date at job start Mon Mar 30 2020 02:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47210 * 2 1 4 4 C 1.53004 * 109.47593 * 120.00275 * 2 1 3 5 5 C 1.53000 * 109.62533 * 301.06205 * 4 2 1 6 6 O 1.43756 * 109.62867 * 61.45265 * 4 2 1 7 7 C 1.44785 * 104.81261 * 144.04682 * 6 4 2 8 8 C 1.54912 * 101.75488 * 323.87303 * 7 6 4 9 9 H 1.08993 * 110.70067 * 277.18279 * 8 7 6 10 10 C 1.53002 * 110.69272 * 153.97648 * 8 7 6 11 11 C 1.50704 * 109.46939 * 175.00398 * 10 8 7 12 12 H 1.07996 * 120.00393 * 0.02562 * 11 10 8 13 13 C 1.37879 * 119.99779 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00206 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 120.00182 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47609 * 89.99503 * 15 13 11 17 17 H 1.48507 * 109.47292 * 209.99680 * 15 13 11 18 18 H 1.48503 * 109.47039 * 329.99496 * 15 13 11 19 19 O 1.43361 * 109.50936 * 180.74285 * 4 2 1 20 20 H 1.09007 * 109.47178 * 299.99425 * 1 2 3 21 21 H 1.09003 * 109.47795 * 59.99827 * 1 2 3 22 22 H 1.09005 * 109.47086 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47178 * 240.00575 * 2 1 3 24 24 H 1.08999 * 109.47129 * 300.00282 * 3 2 1 25 25 H 1.08998 * 109.46716 * 59.99950 * 3 2 1 26 26 H 1.08997 * 109.47202 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46778 * 179.68837 * 5 4 2 28 28 H 1.09000 * 109.46653 * 299.68877 * 5 4 2 29 29 H 1.08994 * 109.47151 * 59.68703 * 5 4 2 30 30 H 1.09002 * 110.97919 * 82.00435 * 7 6 4 31 31 H 1.08997 * 110.97766 * 205.74931 * 7 6 4 32 32 H 1.08996 * 109.47586 * 295.00054 * 10 8 7 33 33 H 1.08999 * 109.47460 * 55.00386 * 10 8 7 34 34 H 0.97000 * 120.00692 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5104 -0.0185 2.5007 6 8 1.5910 -2.0869 1.2356 7 6 2.6833 -2.8415 1.8132 8 6 3.9167 -2.0798 1.2670 9 1 4.1592 -2.4125 0.2579 10 6 5.1172 -2.2559 2.1991 11 6 6.3308 -1.6090 1.5827 12 1 6.2535 -1.1207 0.6225 13 6 7.5396 -1.6396 2.2452 14 7 8.5988 -1.0755 1.7071 15 14 7.6733 -2.4835 3.9062 16 1 8.0276 -3.9121 3.7087 17 1 8.7267 -1.8196 4.7155 18 1 6.3718 -2.3899 4.6152 19 8 3.4735 -0.7066 1.2587 20 1 -0.3634 0.5138 0.8901 21 1 -0.3635 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1299 1.4425 -0.0005 27 1 1.8707 -0.5376 3.3889 28 1 1.8626 1.0129 2.5147 29 1 0.4205 -0.0301 2.4902 30 1 2.6514 -2.8028 2.9021 31 1 2.6742 -3.8729 1.4610 32 1 4.9037 -1.7866 3.1594 33 1 5.3084 -3.3186 2.3485 34 1 9.4492 -1.0967 2.1733 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260001051.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:17 Heat of formation + Delta-G solvation = -106.791218 kcal Electronic energy + Delta-G solvation = -15276.563241 eV Core-core repulsion = 12788.182176 eV Total energy + Delta-G solvation = -2488.381064 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.22862 -35.59532 -34.58075 -32.95603 -30.92767 -28.89446 -27.06925 -26.81124 -23.43027 -22.87238 -20.43459 -19.25302 -17.00912 -16.51065 -16.16590 -15.04868 -14.71467 -14.18406 -13.65594 -13.39357 -12.95881 -12.73314 -12.62149 -12.38841 -12.07645 -11.93870 -11.78265 -11.47989 -11.34633 -11.06946 -10.80142 -10.67541 -10.49923 -10.10595 -9.71051 -9.55217 -9.25529 -8.86444 -8.55230 -6.03654 -4.01432 3.28373 3.36640 3.38736 3.89517 4.36774 4.43643 4.99608 5.02124 5.22229 5.29489 5.35723 5.42030 5.54369 5.63457 5.68681 5.74364 5.79901 5.96293 6.02471 6.08871 6.12154 6.23236 6.28170 6.36333 6.50156 6.58926 6.66486 6.95126 7.23235 7.68869 7.81235 8.53060 9.02682 9.56855 11.09888 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.044730 B = 0.008365 C = 0.007736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.826364 B = 3346.321893 C = 3618.444554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.144 4.144 4 C 0.253 3.747 5 C -0.172 4.172 6 O -0.382 6.382 7 C 0.014 3.986 8 C 0.072 3.928 9 H 0.077 0.923 10 C -0.012 4.012 11 C -0.512 4.512 12 H 0.075 0.925 13 C 0.067 3.933 14 N -0.902 5.902 15 Si 0.877 3.123 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.266 1.266 19 O -0.356 6.356 20 H 0.056 0.944 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.792 0.165 -0.032 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.201 4.201 4 C 0.175 3.825 5 C -0.229 4.229 6 O -0.302 6.302 7 C -0.063 4.063 8 C 0.015 3.985 9 H 0.095 0.905 10 C -0.049 4.049 11 C -0.550 4.550 12 H 0.093 0.907 13 C -0.134 4.134 14 N -0.541 5.541 15 Si 0.704 3.296 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.191 1.191 19 O -0.277 6.277 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.095 0.905 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.674 0.316 -0.077 14.678 hybrid contribution 0.326 -0.550 0.972 1.163 sum -14.349 -0.233 0.895 14.378 Atomic orbital electron populations 1.21837 0.94643 1.02118 1.01449 1.21361 0.95918 0.96876 0.97276 1.21808 1.02710 0.94386 1.01204 1.23265 0.81573 0.83146 0.94475 1.22427 1.01192 1.01790 0.97499 1.89126 1.39866 1.18325 1.82926 1.24550 0.85646 0.97288 0.98784 1.23820 0.94323 0.79763 1.00625 0.90476 1.19725 0.92996 0.97041 0.95185 1.20993 0.91556 1.35566 1.06875 0.90674 1.25005 0.95735 0.95175 0.97533 1.69906 1.00473 1.44836 1.38843 0.86826 0.78096 0.79848 0.84787 1.20249 1.21249 1.19107 1.89049 1.17123 1.26300 1.95199 0.92515 0.92758 0.92145 0.90523 0.92813 0.92585 0.91126 0.92143 0.90692 0.91207 0.91237 0.88115 0.95548 0.95450 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.69 37.15 0.32 -1.41 16 2 C -0.10 -1.42 2.71 -90.62 -0.25 -1.66 16 3 C -0.14 -2.01 8.72 37.16 0.32 -1.69 16 4 C 0.25 4.33 0.81 -26.73 -0.02 4.31 16 5 C -0.17 -2.57 8.49 37.16 0.32 -2.25 16 6 O -0.38 -6.56 10.40 -59.04 -0.61 -7.18 16 7 C 0.01 0.23 7.36 38.17 0.28 0.51 16 8 C 0.07 1.49 3.58 -25.72 -0.09 1.39 16 9 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 10 C -0.01 -0.29 3.80 -27.88 -0.11 -0.40 16 11 C -0.51 -14.77 9.60 -34.44 -0.33 -15.10 16 12 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 15 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 19 O -0.36 -7.55 9.80 -59.04 -0.58 -8.13 16 20 H 0.06 0.63 6.41 -51.93 -0.33 0.30 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.76 7.73 -51.93 -0.40 0.36 16 23 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.72 6.47 -51.93 -0.34 0.38 16 26 H 0.07 1.15 7.66 -51.93 -0.40 0.76 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.08 6.49 -51.93 -0.34 0.74 16 29 H 0.07 0.89 6.41 -51.93 -0.33 0.56 16 30 H 0.07 1.12 8.04 -51.93 -0.42 0.71 16 31 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 33 H 0.03 0.62 7.57 -51.93 -0.39 0.22 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 270.74 15.07 4.08 4.08 Total: -1.00 -31.23 270.74 -6.10 -37.33 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.44 Total: -1.34 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 0.35 Total: -14.44 kcal Atomic # 7 Polarization: -28.02 SS G_CDS: 0.77 Total: -27.25 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -1.19 Total: -15.30 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.23 -6.10 -37.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001051.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.458 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds