Wall clock time and date at job start Mon Mar 30 2020 02:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47210 * 2 1 4 4 C 1.53004 * 109.47593 * 120.00275 * 2 1 3 5 5 C 1.53000 * 109.62533 * 301.06205 * 4 2 1 6 6 O 1.43756 * 109.62867 * 61.45265 * 4 2 1 7 7 C 1.44785 * 104.81261 * 144.04682 * 6 4 2 8 8 C 1.54912 * 101.75488 * 323.87303 * 7 6 4 9 9 H 1.08993 * 110.70067 * 277.18279 * 8 7 6 10 10 C 1.53002 * 110.69272 * 153.97648 * 8 7 6 11 11 C 1.50704 * 109.46939 * 175.00398 * 10 8 7 12 12 H 1.07996 * 120.00393 * 0.02562 * 11 10 8 13 13 C 1.37879 * 119.99779 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00206 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 120.00182 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47609 * 89.99503 * 15 13 11 17 17 H 1.48507 * 109.47292 * 209.99680 * 15 13 11 18 18 H 1.48503 * 109.47039 * 329.99496 * 15 13 11 19 19 O 1.43361 * 109.50936 * 180.74285 * 4 2 1 20 20 H 1.09007 * 109.47178 * 299.99425 * 1 2 3 21 21 H 1.09003 * 109.47795 * 59.99827 * 1 2 3 22 22 H 1.09005 * 109.47086 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47178 * 240.00575 * 2 1 3 24 24 H 1.08999 * 109.47129 * 300.00282 * 3 2 1 25 25 H 1.08998 * 109.46716 * 59.99950 * 3 2 1 26 26 H 1.08997 * 109.47202 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46778 * 179.68837 * 5 4 2 28 28 H 1.09000 * 109.46653 * 299.68877 * 5 4 2 29 29 H 1.08994 * 109.47151 * 59.68703 * 5 4 2 30 30 H 1.09002 * 110.97919 * 82.00435 * 7 6 4 31 31 H 1.08997 * 110.97766 * 205.74931 * 7 6 4 32 32 H 1.08996 * 109.47586 * 295.00054 * 10 8 7 33 33 H 1.08999 * 109.47460 * 55.00386 * 10 8 7 34 34 H 0.97000 * 120.00692 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5104 -0.0185 2.5007 6 8 1.5910 -2.0869 1.2356 7 6 2.6833 -2.8415 1.8132 8 6 3.9167 -2.0798 1.2670 9 1 4.1592 -2.4125 0.2579 10 6 5.1172 -2.2559 2.1991 11 6 6.3308 -1.6090 1.5827 12 1 6.2535 -1.1207 0.6225 13 6 7.5396 -1.6396 2.2452 14 7 8.5988 -1.0755 1.7071 15 14 7.6733 -2.4835 3.9062 16 1 8.0276 -3.9121 3.7087 17 1 8.7267 -1.8196 4.7155 18 1 6.3718 -2.3899 4.6152 19 8 3.4735 -0.7066 1.2587 20 1 -0.3634 0.5138 0.8901 21 1 -0.3635 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1299 1.4425 -0.0005 27 1 1.8707 -0.5376 3.3889 28 1 1.8626 1.0129 2.5147 29 1 0.4205 -0.0301 2.4902 30 1 2.6514 -2.8028 2.9021 31 1 2.6742 -3.8729 1.4610 32 1 4.9037 -1.7866 3.1594 33 1 5.3084 -3.3186 2.3485 34 1 9.4492 -1.0967 2.1733 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260001051.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:16 Heat of formation + Delta-G solvation = -127.411530 kcal Electronic energy + Delta-G solvation = -15277.457405 eV Core-core repulsion = 12788.182176 eV Total energy + Delta-G solvation = -2489.275228 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.62905 -36.90881 -36.04400 -34.99640 -32.74492 -30.23056 -28.59548 -28.00930 -24.95437 -24.39790 -22.21373 -20.51482 -18.98284 -18.16619 -17.49243 -16.54104 -16.31798 -15.83778 -14.96418 -14.93975 -14.57305 -14.16035 -13.89500 -13.86217 -13.63333 -13.27962 -13.26571 -13.08749 -12.52022 -12.42232 -12.27340 -11.96164 -11.92226 -11.81583 -11.59116 -11.36962 -10.94668 -10.78407 -10.33130 -8.29098 -6.33820 1.35268 1.38518 1.49694 2.35706 2.53192 2.99682 3.10832 3.68858 3.80699 3.85320 4.04491 4.22484 4.24994 4.38474 4.50930 4.53425 4.66539 4.69888 4.81258 4.84406 4.98727 5.00363 5.04025 5.08351 5.13133 5.20148 5.37737 5.47631 5.48855 5.59950 6.23926 6.34422 6.72205 7.28636 8.88369 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.044730 B = 0.008365 C = 0.007736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.826364 B = 3346.321893 C = 3618.444554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 C -0.140 4.140 4 C 0.240 3.760 5 C -0.168 4.168 6 O -0.382 6.382 7 C 0.024 3.976 8 C 0.065 3.935 9 H 0.062 0.938 10 C -0.007 4.007 11 C -0.525 4.525 12 H 0.023 0.977 13 C 0.001 3.999 14 N -0.953 5.953 15 Si 0.954 3.046 16 H -0.259 1.259 17 H -0.285 1.285 18 H -0.245 1.245 19 O -0.389 6.389 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.027 0.973 33 H 0.049 0.951 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.969 -0.781 1.666 17.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.117 4.117 3 C -0.197 4.197 4 C 0.164 3.836 5 C -0.226 4.226 6 O -0.303 6.303 7 C -0.052 4.052 8 C 0.008 3.992 9 H 0.080 0.920 10 C -0.044 4.044 11 C -0.563 4.563 12 H 0.042 0.958 13 C -0.195 4.195 14 N -0.594 5.594 15 Si 0.777 3.223 16 H -0.184 1.184 17 H -0.211 1.211 18 H -0.168 1.168 19 O -0.311 6.311 20 H 0.089 0.911 21 H 0.091 0.909 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.148 0.852 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.882 -0.634 1.609 16.970 hybrid contribution 1.012 -0.175 0.321 1.076 sum -15.870 -0.809 1.930 16.007 Atomic orbital electron populations 1.21784 0.91924 1.02384 1.03104 1.21419 0.98089 0.96678 0.95549 1.21776 1.00424 0.94478 1.03017 1.23682 0.79732 0.83610 0.96597 1.22429 1.02758 1.01436 0.95946 1.89118 1.39630 1.18383 1.83153 1.24544 0.83204 0.97962 0.99460 1.23691 0.95268 0.80770 0.99436 0.92048 1.19634 0.92017 0.97485 0.95267 1.21276 0.94132 1.35541 1.05375 0.95830 1.26073 0.95007 0.95957 1.02463 1.70081 1.01346 1.46794 1.41167 0.85605 0.78988 0.79045 0.78676 1.18402 1.21102 1.16799 1.89024 1.19990 1.26668 1.95398 0.91096 0.90900 0.92531 0.92313 0.90604 0.91180 0.94616 0.92697 0.90505 0.88555 0.89895 0.85225 0.95496 0.93288 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.69 71.98 0.63 -2.27 16 2 C -0.10 -2.83 2.71 -10.79 -0.03 -2.86 16 3 C -0.14 -3.82 8.72 71.98 0.63 -3.19 16 4 C 0.24 7.97 0.81 30.60 0.02 8.00 16 5 C -0.17 -4.67 8.49 71.98 0.61 -4.06 16 6 O -0.38 -12.35 10.40 -126.22 -1.31 -13.66 16 7 C 0.02 0.77 7.36 72.64 0.53 1.30 16 8 C 0.07 2.72 3.58 31.25 0.11 2.83 16 9 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 10 C -0.01 -0.32 3.80 29.85 0.11 -0.20 16 11 C -0.53 -31.31 9.60 25.60 0.25 -31.06 16 12 H 0.02 1.58 7.99 -2.91 -0.02 1.56 16 13 C 0.00 0.08 5.47 84.66 0.46 0.54 16 14 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 15 Si 0.95 44.06 27.47 68.60 1.88 45.94 16 16 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 17 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 18 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 19 O -0.39 -16.79 9.80 -126.22 -1.24 -18.03 16 20 H 0.07 1.32 6.41 -2.38 -0.02 1.31 16 21 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.06 1.27 7.73 -2.38 -0.02 1.25 16 23 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 24 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.07 1.69 6.47 -2.39 -0.02 1.67 16 26 H 0.03 1.20 7.66 -2.39 -0.02 1.18 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 2.08 6.49 -2.39 -0.02 2.06 16 29 H 0.10 2.13 6.41 -2.39 -0.02 2.11 16 30 H 0.08 2.41 8.04 -2.39 -0.02 2.39 16 31 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 32 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 33 H 0.05 2.10 7.57 -2.39 -0.02 2.08 16 34 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -69.88 270.74 3.96 -65.91 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 1.00 Total: 11.68 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 3.33 Total: -30.97 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.30 Total: -60.87 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -2.55 Total: -31.69 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.94 kcal Total: -69.88 3.96 -65.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001051.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.499 kcal (2) G-P(sol) polarization free energy of solvation -69.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds