Wall clock time and date at job start Mon Mar 30 2020 02:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52989 * 109.47607 * 2 1 4 4 C 1.53007 * 109.46814 * 120.00230 * 2 1 3 5 5 C 1.53001 * 109.62928 * 63.93590 * 4 2 1 6 6 O 1.43369 * 109.63037 * 303.54382 * 4 2 1 7 7 C 1.44195 * 107.28813 * 239.60188 * 6 4 2 8 8 C 1.54913 * 103.07437 * 338.56587 * 7 6 4 9 9 H 1.09002 * 110.97297 * 277.41410 * 8 7 6 10 10 C 1.53002 * 110.97810 * 153.66967 * 8 7 6 11 11 C 1.50703 * 109.47207 * 174.99586 * 10 8 7 12 12 H 1.07994 * 119.99603 * 359.97438 * 11 10 8 13 13 C 1.37875 * 119.99838 * 180.02562 * 11 10 8 14 14 N 1.31513 * 120.00380 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99848 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47261 * 239.99776 * 15 13 11 18 18 H 1.48500 * 109.47454 * 119.99769 * 15 13 11 19 19 O 1.43748 * 109.50857 * 184.25598 * 4 2 1 20 20 H 1.09002 * 109.46931 * 300.00605 * 1 2 3 21 21 H 1.08999 * 109.46741 * 59.99642 * 1 2 3 22 22 H 1.08998 * 109.47663 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46931 * 239.99394 * 2 1 3 24 24 H 1.08994 * 109.47643 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47362 * 299.99977 * 3 2 1 26 26 H 1.09002 * 109.47469 * 59.99724 * 3 2 1 27 27 H 1.08999 * 109.46825 * 300.30552 * 5 4 2 28 28 H 1.08998 * 109.47292 * 60.30620 * 5 4 2 29 29 H 1.08996 * 109.46854 * 180.30918 * 5 4 2 30 30 H 1.08998 * 110.69763 * 220.16121 * 7 6 4 31 31 H 1.09005 * 110.69457 * 96.95661 * 7 6 4 32 32 H 1.09005 * 109.47493 * 54.99586 * 10 8 7 33 33 H 1.08998 * 109.47006 * 294.99549 * 10 8 7 34 34 H 0.97001 * 119.99667 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6143 -2.1903 1.2044 6 8 1.4969 -0.0981 2.4207 7 6 2.6085 0.3647 3.2142 8 6 3.7860 -0.5061 2.7093 9 1 3.7897 -1.4796 3.1998 10 6 5.1228 0.2105 2.9105 11 6 6.2503 -0.7116 2.5236 12 1 6.0349 -1.7091 2.1701 13 6 7.5567 -0.2821 2.6220 14 7 7.8190 0.9324 3.0530 15 14 8.9542 -1.4248 2.1419 16 1 8.3975 -2.7260 1.6920 17 1 9.8392 -1.6443 3.3140 18 1 9.7372 -0.8129 1.0383 19 8 3.4739 -0.6354 1.3015 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6768 1.9562 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 0.5268 -2.2523 1.1637 28 1 2.0386 -2.6646 0.3195 29 1 1.9741 -2.7002 2.0980 30 1 2.4252 0.1879 4.2740 31 1 2.8024 1.4208 3.0266 32 1 5.2288 0.4947 3.9575 33 1 5.1536 1.1037 2.2866 34 1 7.0933 1.5259 3.3020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260001055.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:19 Heat of formation + Delta-G solvation = -116.381918 kcal Electronic energy + Delta-G solvation = -15340.687609 eV Core-core repulsion = 12851.890661 eV Total energy + Delta-G solvation = -2488.796948 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.26161 -35.35406 -34.46170 -33.35078 -30.77765 -29.18035 -26.73116 -26.20578 -23.09792 -22.91950 -20.90848 -19.49454 -17.21738 -16.51715 -15.82109 -15.06242 -14.38838 -14.09503 -13.76078 -13.55798 -12.97223 -12.81948 -12.59438 -12.07953 -11.98514 -11.95348 -11.76955 -11.32570 -11.20125 -11.03872 -10.74460 -10.62645 -10.56205 -10.15920 -9.98847 -9.45838 -9.01996 -8.58875 -8.35518 -6.37826 -4.06373 3.44713 3.48744 3.62803 3.91356 4.37868 4.53925 4.95212 5.05472 5.26156 5.28774 5.39761 5.52466 5.58249 5.62437 5.72506 5.74212 5.82671 5.98641 6.03591 6.08031 6.12451 6.23385 6.33375 6.37221 6.49557 6.59703 6.65896 7.12378 7.31280 7.74631 8.14422 8.45634 8.85683 9.63785 11.02939 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.044773 B = 0.007896 C = 0.007744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.222903 B = 3545.170421 C = 3614.997300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 C -0.143 4.143 4 C 0.251 3.749 5 C -0.169 4.169 6 O -0.385 6.385 7 C 0.020 3.980 8 C 0.067 3.933 9 H 0.071 0.929 10 C 0.015 3.985 11 C -0.594 4.594 12 H 0.052 0.948 13 C 0.015 3.985 14 N -0.915 5.915 15 Si 1.075 2.925 16 H -0.289 1.289 17 H -0.287 1.287 18 H -0.287 1.287 19 O -0.352 6.352 20 H 0.062 0.938 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.025 0.975 33 H 0.020 0.980 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.803 -2.285 -3.461 13.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 C -0.201 4.201 4 C 0.174 3.826 5 C -0.227 4.227 6 O -0.306 6.306 7 C -0.057 4.057 8 C 0.010 3.990 9 H 0.089 0.911 10 C -0.022 4.022 11 C -0.632 4.632 12 H 0.071 0.929 13 C -0.189 4.189 14 N -0.551 5.551 15 Si 0.904 3.096 16 H -0.215 1.215 17 H -0.214 1.214 18 H -0.213 1.213 19 O -0.272 6.272 20 H 0.081 0.919 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.098 0.902 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.228 -2.386 -3.714 12.064 hybrid contribution -1.620 0.051 0.253 1.640 sum -12.848 -2.335 -3.462 13.509 Atomic orbital electron populations 1.21782 0.94416 1.01673 1.01930 1.21370 0.96036 0.97338 0.96676 1.21729 1.02314 0.94906 1.01104 1.23264 0.80755 0.91846 0.86764 1.22380 1.01827 0.95468 1.03032 1.88754 1.30895 1.76964 1.33989 1.24345 0.85999 0.99385 0.95939 1.24035 0.96622 0.98196 0.80113 0.91148 1.19277 0.89840 0.96339 0.96726 1.21988 0.92257 1.01026 1.47903 0.92948 1.25850 0.99834 0.98576 0.94619 1.70744 1.36198 1.06830 1.41335 0.83457 0.74962 0.74612 0.76609 1.21495 1.21352 1.21299 1.89369 1.18239 1.94089 1.25538 0.91896 0.92763 0.92708 0.90225 0.91501 0.93112 0.92695 0.91286 0.91015 0.92034 0.89236 0.91142 0.95744 0.96157 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.75 37.16 0.33 -1.42 16 2 C -0.10 -1.44 2.55 -90.62 -0.23 -1.67 16 3 C -0.14 -2.22 8.89 37.15 0.33 -1.89 16 4 C 0.25 4.38 0.73 -26.73 -0.02 4.36 16 5 C -0.17 -2.56 8.94 37.16 0.33 -2.23 16 6 O -0.38 -6.79 9.54 -59.04 -0.56 -7.35 16 7 C 0.02 0.35 7.54 38.17 0.29 0.64 16 8 C 0.07 1.45 3.37 -25.72 -0.09 1.36 16 9 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 10 C 0.02 0.38 4.06 -27.88 -0.11 0.27 16 11 C -0.59 -17.12 9.07 -34.44 -0.31 -17.44 16 12 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.01 0.42 5.46 -17.82 -0.10 0.33 16 14 N -0.91 -28.05 13.65 55.43 0.76 -27.29 16 15 Si 1.08 25.80 29.90 -169.99 -5.08 20.72 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 O -0.35 -7.62 9.83 -59.04 -0.58 -8.20 16 20 H 0.06 0.82 7.60 -51.93 -0.39 0.43 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.62 6.54 -51.93 -0.34 0.28 16 23 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.07 1.20 7.57 -51.93 -0.39 0.80 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.86 7.79 -51.93 -0.40 0.45 16 27 H 0.07 0.89 6.53 -51.93 -0.34 0.55 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 32 H 0.02 0.63 8.01 -51.93 -0.42 0.21 16 33 H 0.02 0.55 8.01 -51.93 -0.42 0.13 16 34 H 0.27 8.12 7.22 -40.82 -0.29 7.83 16 LS Contribution 275.65 15.07 4.15 4.15 Total: -1.00 -31.02 275.65 -6.48 -37.50 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -5.58 Total: -1.84 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 0.42 Total: -17.68 kcal Atomic # 7 Polarization: -28.05 SS G_CDS: 0.76 Total: -27.29 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -1.14 Total: -15.55 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.02 -6.48 -37.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001055.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.885 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds