Wall clock time and date at job start Mon Mar 30 2020 02:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52989 * 109.47607 * 2 1 4 4 C 1.53007 * 109.46814 * 120.00230 * 2 1 3 5 5 C 1.53001 * 109.62928 * 63.93590 * 4 2 1 6 6 O 1.43369 * 109.63037 * 303.54382 * 4 2 1 7 7 C 1.44195 * 107.28813 * 239.60188 * 6 4 2 8 8 C 1.54913 * 103.07437 * 338.56587 * 7 6 4 9 9 H 1.09002 * 110.97297 * 277.41410 * 8 7 6 10 10 C 1.53002 * 110.97810 * 153.66967 * 8 7 6 11 11 C 1.50703 * 109.47207 * 174.99586 * 10 8 7 12 12 H 1.07994 * 119.99603 * 359.97438 * 11 10 8 13 13 C 1.37875 * 119.99838 * 180.02562 * 11 10 8 14 14 N 1.31513 * 120.00380 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99848 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47261 * 239.99776 * 15 13 11 18 18 H 1.48500 * 109.47454 * 119.99769 * 15 13 11 19 19 O 1.43748 * 109.50857 * 184.25598 * 4 2 1 20 20 H 1.09002 * 109.46931 * 300.00605 * 1 2 3 21 21 H 1.08999 * 109.46741 * 59.99642 * 1 2 3 22 22 H 1.08998 * 109.47663 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46931 * 239.99394 * 2 1 3 24 24 H 1.08994 * 109.47643 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47362 * 299.99977 * 3 2 1 26 26 H 1.09002 * 109.47469 * 59.99724 * 3 2 1 27 27 H 1.08999 * 109.46825 * 300.30552 * 5 4 2 28 28 H 1.08998 * 109.47292 * 60.30620 * 5 4 2 29 29 H 1.08996 * 109.46854 * 180.30918 * 5 4 2 30 30 H 1.08998 * 110.69763 * 220.16121 * 7 6 4 31 31 H 1.09005 * 110.69457 * 96.95661 * 7 6 4 32 32 H 1.09005 * 109.47493 * 54.99586 * 10 8 7 33 33 H 1.08998 * 109.47006 * 294.99549 * 10 8 7 34 34 H 0.97001 * 119.99667 * 0.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6143 -2.1903 1.2044 6 8 1.4969 -0.0981 2.4207 7 6 2.6085 0.3647 3.2142 8 6 3.7860 -0.5061 2.7093 9 1 3.7897 -1.4796 3.1998 10 6 5.1228 0.2105 2.9105 11 6 6.2503 -0.7116 2.5236 12 1 6.0349 -1.7091 2.1701 13 6 7.5567 -0.2821 2.6220 14 7 7.8190 0.9324 3.0530 15 14 8.9542 -1.4248 2.1419 16 1 8.3975 -2.7260 1.6920 17 1 9.8392 -1.6443 3.3140 18 1 9.7372 -0.8129 1.0383 19 8 3.4739 -0.6354 1.3015 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6768 1.9562 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 0.5268 -2.2523 1.1637 28 1 2.0386 -2.6646 0.3195 29 1 1.9741 -2.7002 2.0980 30 1 2.4252 0.1879 4.2740 31 1 2.8024 1.4208 3.0266 32 1 5.2288 0.4947 3.9575 33 1 5.1536 1.1037 2.2866 34 1 7.0933 1.5259 3.3020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260001055.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:18 Heat of formation + Delta-G solvation = -135.536660 kcal Electronic energy + Delta-G solvation = -15341.518221 eV Core-core repulsion = 12851.890661 eV Total energy + Delta-G solvation = -2489.627560 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.73115 -36.85687 -35.90788 -35.36737 -32.45403 -30.65487 -28.05978 -27.80423 -25.11875 -24.20376 -22.66811 -20.81136 -19.14966 -18.29020 -17.31154 -16.47260 -15.73946 -15.68455 -15.49872 -15.07051 -14.78901 -14.32497 -14.08243 -13.58812 -13.31512 -13.23788 -13.10466 -12.93295 -12.88061 -12.54854 -12.44834 -12.04582 -11.94722 -11.87401 -11.67023 -11.05101 -10.71714 -10.59777 -10.42990 -8.72103 -6.41605 1.50357 1.59867 1.77061 2.45402 2.53647 2.97850 3.15027 3.60804 3.72627 3.82940 3.96158 4.13729 4.17090 4.39763 4.45910 4.50231 4.58480 4.68001 4.75858 4.78503 4.92281 4.95035 4.98818 5.03923 5.08254 5.18796 5.31362 5.38464 5.42982 5.91143 6.13126 6.23405 6.53564 7.37064 8.69398 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.044773 B = 0.007896 C = 0.007744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.222903 B = 3545.170421 C = 3614.997300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 C -0.140 4.140 4 C 0.239 3.761 5 C -0.167 4.167 6 O -0.381 6.381 7 C 0.030 3.970 8 C 0.069 3.931 9 H 0.069 0.931 10 C 0.019 3.981 11 C -0.610 4.610 12 H 0.045 0.955 13 C -0.036 4.036 14 N -0.936 5.936 15 Si 1.121 2.879 16 H -0.274 1.274 17 H -0.273 1.273 18 H -0.279 1.279 19 O -0.382 6.382 20 H 0.055 0.945 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.032 0.968 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.019 0.981 33 H -0.004 1.004 34 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.033 -3.272 -4.062 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.117 4.117 3 C -0.197 4.197 4 C 0.162 3.838 5 C -0.224 4.224 6 O -0.303 6.303 7 C -0.047 4.047 8 C 0.012 3.988 9 H 0.087 0.913 10 C -0.018 4.018 11 C -0.647 4.647 12 H 0.063 0.937 13 C -0.234 4.234 14 N -0.574 5.574 15 Si 0.943 3.057 16 H -0.199 1.199 17 H -0.199 1.199 18 H -0.205 1.205 19 O -0.303 6.303 20 H 0.074 0.926 21 H 0.093 0.907 22 H 0.087 0.913 23 H 0.102 0.898 24 H 0.051 0.949 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.114 0.886 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.134 0.866 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.014 0.986 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.490 -3.369 -4.312 13.637 hybrid contribution -1.288 0.383 0.411 1.405 sum -13.778 -2.986 -3.901 14.628 Atomic orbital electron populations 1.21738 0.91793 1.02869 1.02611 1.21468 0.98111 0.96474 0.95614 1.21691 1.00048 0.95873 1.02113 1.23729 0.78748 0.93700 0.87610 1.22384 1.03538 0.93522 1.02955 1.88744 1.30336 1.77137 1.34044 1.24251 0.84640 0.98480 0.97286 1.23783 0.95824 0.98249 0.80907 0.91296 1.19126 0.91752 0.95293 0.95652 1.22342 0.93583 1.01172 1.47638 0.93700 1.27377 1.02936 0.99194 0.93863 1.70870 1.35802 1.07680 1.43038 0.82880 0.72465 0.73368 0.77036 1.19870 1.19871 1.20456 1.89329 1.21273 1.94378 1.25295 0.92612 0.90697 0.91260 0.89779 0.94910 0.90589 0.93209 0.88647 0.90392 0.92868 0.86601 0.91410 0.96260 0.98572 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.75 71.98 0.63 -2.24 16 2 C -0.10 -2.79 2.55 -10.80 -0.03 -2.81 16 3 C -0.14 -4.23 8.89 71.98 0.64 -3.59 16 4 C 0.24 8.02 0.73 30.60 0.02 8.05 16 5 C -0.17 -4.68 8.94 71.98 0.64 -4.04 16 6 O -0.38 -12.84 9.54 -126.22 -1.20 -14.04 16 7 C 0.03 1.05 7.54 72.64 0.55 1.60 16 8 C 0.07 3.02 3.37 31.25 0.11 3.12 16 9 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 10 C 0.02 0.99 4.06 29.85 0.12 1.11 16 11 C -0.61 -35.79 9.07 25.60 0.23 -35.56 16 12 H 0.04 2.64 7.74 -2.91 -0.02 2.62 16 13 C -0.04 -2.14 5.46 84.65 0.46 -1.68 16 14 N -0.94 -58.40 13.65 21.45 0.29 -58.11 16 15 Si 1.12 51.57 29.90 68.60 2.05 53.62 16 16 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 O -0.38 -16.63 9.83 -126.22 -1.24 -17.87 16 20 H 0.05 1.30 7.60 -2.39 -0.02 1.28 16 21 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.07 1.30 6.54 -2.39 -0.02 1.28 16 23 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.03 1.19 7.57 -2.39 -0.02 1.17 16 25 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 1.52 7.79 -2.39 -0.02 1.50 16 27 H 0.09 2.15 6.53 -2.39 -0.02 2.14 16 28 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 31 H 0.07 2.42 8.04 -2.38 -0.02 2.40 16 32 H 0.02 1.02 8.01 -2.38 -0.02 1.00 16 33 H 0.00 -0.23 8.01 -2.39 -0.02 -0.25 16 34 H 0.26 16.08 7.22 -92.71 -0.67 15.41 16 Total: -1.00 -66.88 275.65 4.43 -62.46 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.15 Total: 9.99 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 3.38 Total: -36.05 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.29 Total: -58.11 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -2.44 Total: -31.91 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 2.05 Total: 53.62 kcal Total: -66.88 4.43 -62.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001055.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.078 kcal (2) G-P(sol) polarization free energy of solvation -66.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds