Wall clock time and date at job start Mon Mar 30 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47192 * 2 1 4 4 C 1.53003 * 109.46930 * 119.99945 * 2 1 3 5 5 C 1.53004 * 109.62518 * 301.05673 * 4 2 1 6 6 O 1.43366 * 109.63163 * 61.44889 * 4 2 1 7 7 C 1.44199 * 107.28452 * 120.40038 * 6 4 2 8 8 C 1.54909 * 103.07987 * 21.43522 * 7 6 4 9 9 H 1.09004 * 110.97620 * 82.58138 * 8 7 6 10 10 C 1.52997 * 110.98023 * 206.33102 * 8 7 6 11 11 C 1.50701 * 109.47212 * 184.99855 * 10 8 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 8 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 O 1.43749 * 109.51057 * 180.74155 * 4 2 1 20 20 H 1.08999 * 109.46893 * 60.00018 * 1 2 3 21 21 H 1.08994 * 109.47615 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.46670 * 300.00592 * 1 2 3 23 23 H 1.08995 * 109.46798 * 239.99508 * 2 1 3 24 24 H 1.09005 * 109.46531 * 180.02562 * 3 2 1 25 25 H 1.08995 * 109.46785 * 299.99530 * 3 2 1 26 26 H 1.08995 * 109.47651 * 60.00030 * 3 2 1 27 27 H 1.09007 * 109.46579 * 179.69461 * 5 4 2 28 28 H 1.09000 * 109.47383 * 299.69060 * 5 4 2 29 29 H 1.08995 * 109.47175 * 59.69732 * 5 4 2 30 30 H 1.08996 * 110.69430 * 263.03415 * 7 6 4 31 31 H 1.09004 * 110.84125 * 139.90098 * 7 6 4 32 32 H 1.09002 * 109.47153 * 64.99856 * 10 8 7 33 33 H 1.09001 * 109.46832 * 305.00047 * 10 8 7 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5103 -0.0182 2.5008 6 8 1.5921 -2.0831 1.2358 7 6 2.7659 -2.9204 1.2532 8 6 3.8569 -1.9827 1.8279 9 1 3.8126 -1.9538 2.9167 10 6 5.2481 -2.4035 1.3501 11 6 6.2905 -1.5487 2.0238 12 1 5.9907 -0.7823 2.7231 13 6 7.6270 -1.7459 1.7481 14 7 7.9920 -2.6795 0.8969 15 14 8.9191 -0.6868 2.5836 16 1 8.2536 0.2829 3.4903 17 1 9.8346 -1.5516 3.3705 18 1 9.6962 0.0499 1.5547 19 8 3.4774 -0.7066 1.2590 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5140 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 3.1301 1.4424 -0.0005 25 1 1.6768 1.9562 -0.8900 26 1 1.6768 1.9564 0.8899 27 1 1.8707 -0.5373 3.3890 28 1 1.8626 1.0132 2.5147 29 1 0.4205 -0.0299 2.4902 30 1 3.0256 -3.2406 0.2443 31 1 2.6176 -3.7827 1.9034 32 1 5.3155 -2.2750 0.2698 33 1 5.4178 -3.4502 1.6027 34 1 8.9322 -2.8180 0.7026 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260001058.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:20 Heat of formation + Delta-G solvation = -111.652176 kcal Electronic energy + Delta-G solvation = -15229.369688 eV Core-core repulsion = 12740.777837 eV Total energy + Delta-G solvation = -2488.591851 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.13667 -35.53257 -34.48559 -33.03490 -30.64216 -28.75196 -26.98460 -26.48286 -23.39911 -23.11465 -20.57157 -19.08520 -16.86573 -16.09623 -16.01733 -15.06487 -14.81450 -14.34026 -13.60232 -13.35273 -12.91152 -12.80508 -12.33627 -12.11786 -11.98751 -11.78417 -11.53881 -11.36175 -11.16058 -11.10667 -10.76202 -10.63935 -10.53519 -10.40511 -9.65359 -9.36436 -9.11265 -8.91058 -8.40815 -6.03171 -4.04407 3.31156 3.38522 3.43728 3.98754 4.43184 4.45768 5.03789 5.07780 5.33749 5.37066 5.39611 5.56290 5.63427 5.65554 5.73922 5.80524 5.85282 6.00725 6.04766 6.16309 6.19810 6.27800 6.34467 6.44872 6.56223 6.63331 6.79267 7.43028 7.57715 7.87263 7.93911 8.34157 8.99701 9.58976 11.08486 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.042313 B = 0.007995 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.583912 B = 3501.536269 C = 3769.736318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C -0.144 4.144 4 C 0.252 3.748 5 C -0.171 4.171 6 O -0.389 6.389 7 C 0.020 3.980 8 C 0.059 3.941 9 H 0.070 0.930 10 C 0.028 3.972 11 C -0.512 4.512 12 H 0.058 0.942 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 O -0.353 6.353 20 H 0.053 0.947 21 H 0.060 0.940 22 H 0.055 0.945 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.029 0.971 33 H 0.035 0.965 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.624 3.832 0.078 13.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C -0.202 4.202 4 C 0.175 3.825 5 C -0.228 4.228 6 O -0.311 6.311 7 C -0.057 4.057 8 C 0.002 3.998 9 H 0.088 0.912 10 C -0.009 4.009 11 C -0.551 4.551 12 H 0.077 0.923 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 O -0.273 6.273 20 H 0.072 0.928 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.544 3.869 -0.076 13.128 hybrid contribution 0.888 0.379 0.480 1.078 sum -11.657 4.248 0.404 12.413 Atomic orbital electron populations 1.21817 0.94553 1.02181 1.01363 1.21349 0.95923 0.96755 0.97421 1.21816 1.02565 0.94634 1.01137 1.23227 0.81750 0.83291 0.94282 1.22427 1.01464 1.01358 0.97586 1.88753 1.30535 1.16291 1.95500 1.24340 0.84716 0.94773 1.01827 1.24242 0.97745 0.80354 0.97436 0.91243 1.19168 0.86990 0.96939 0.97789 1.21153 0.90830 1.17870 1.25209 0.92337 1.24996 0.98716 0.95460 0.95293 1.69961 1.16571 1.32510 1.34618 0.86493 0.81502 0.80399 0.79388 1.19694 1.21026 1.20971 1.89371 1.17262 1.37352 1.83337 0.92787 0.92069 0.92555 0.90527 0.91266 0.92899 0.92638 0.92149 0.90761 0.91353 0.91017 0.89186 0.95247 0.94713 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.69 37.16 0.32 -1.44 16 2 C -0.10 -1.46 2.71 -90.62 -0.25 -1.70 16 3 C -0.14 -2.03 8.72 37.16 0.32 -1.70 16 4 C 0.25 4.42 0.81 -26.73 -0.02 4.40 16 5 C -0.17 -2.59 8.49 37.16 0.32 -2.27 16 6 O -0.39 -7.01 10.26 -59.04 -0.61 -7.62 16 7 C 0.02 0.36 7.54 38.16 0.29 0.65 16 8 C 0.06 1.27 3.37 -25.73 -0.09 1.18 16 9 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 10 C 0.03 0.72 4.75 -27.88 -0.13 0.59 16 11 C -0.51 -14.59 9.07 -34.44 -0.31 -14.90 16 12 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 15 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 O -0.35 -7.61 9.98 -59.04 -0.59 -8.20 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.79 7.73 -51.93 -0.40 0.39 16 22 H 0.06 0.64 6.41 -51.92 -0.33 0.31 16 23 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.07 1.12 7.66 -51.93 -0.40 0.73 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.71 6.47 -51.93 -0.34 0.37 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.06 6.49 -51.93 -0.34 0.73 16 29 H 0.07 0.89 6.41 -51.93 -0.33 0.56 16 30 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 274.38 15.07 4.13 4.13 Total: -1.00 -30.32 274.38 -6.47 -36.79 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -5.48 Total: -2.18 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 0.35 Total: -13.68 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.74 Total: -26.09 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -1.19 Total: -15.82 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.32 -6.47 -36.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001058.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.860 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds