Wall clock time and date at job start Mon Mar 30 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47192 * 2 1 4 4 C 1.53003 * 109.46930 * 119.99945 * 2 1 3 5 5 C 1.53004 * 109.62518 * 301.05673 * 4 2 1 6 6 O 1.43366 * 109.63163 * 61.44889 * 4 2 1 7 7 C 1.44199 * 107.28452 * 120.40038 * 6 4 2 8 8 C 1.54909 * 103.07987 * 21.43522 * 7 6 4 9 9 H 1.09004 * 110.97620 * 82.58138 * 8 7 6 10 10 C 1.52997 * 110.98023 * 206.33102 * 8 7 6 11 11 C 1.50701 * 109.47212 * 184.99855 * 10 8 7 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 8 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 O 1.43749 * 109.51057 * 180.74155 * 4 2 1 20 20 H 1.08999 * 109.46893 * 60.00018 * 1 2 3 21 21 H 1.08994 * 109.47615 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.46670 * 300.00592 * 1 2 3 23 23 H 1.08995 * 109.46798 * 239.99508 * 2 1 3 24 24 H 1.09005 * 109.46531 * 180.02562 * 3 2 1 25 25 H 1.08995 * 109.46785 * 299.99530 * 3 2 1 26 26 H 1.08995 * 109.47651 * 60.00030 * 3 2 1 27 27 H 1.09007 * 109.46579 * 179.69461 * 5 4 2 28 28 H 1.09000 * 109.47383 * 299.69060 * 5 4 2 29 29 H 1.08995 * 109.47175 * 59.69732 * 5 4 2 30 30 H 1.08996 * 110.69430 * 263.03415 * 7 6 4 31 31 H 1.09004 * 110.84125 * 139.90098 * 7 6 4 32 32 H 1.09002 * 109.47153 * 64.99856 * 10 8 7 33 33 H 1.09001 * 109.46832 * 305.00047 * 10 8 7 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5103 -0.0182 2.5008 6 8 1.5921 -2.0831 1.2358 7 6 2.7659 -2.9204 1.2532 8 6 3.8569 -1.9827 1.8279 9 1 3.8126 -1.9538 2.9167 10 6 5.2481 -2.4035 1.3501 11 6 6.2905 -1.5487 2.0238 12 1 5.9907 -0.7823 2.7231 13 6 7.6270 -1.7459 1.7481 14 7 7.9920 -2.6795 0.8969 15 14 8.9191 -0.6868 2.5836 16 1 8.2536 0.2829 3.4903 17 1 9.8346 -1.5516 3.3705 18 1 9.6962 0.0499 1.5547 19 8 3.4774 -0.7066 1.2590 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5140 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 3.1301 1.4424 -0.0005 25 1 1.6768 1.9562 -0.8900 26 1 1.6768 1.9564 0.8899 27 1 1.8707 -0.5373 3.3890 28 1 1.8626 1.0132 2.5147 29 1 0.4205 -0.0299 2.4902 30 1 3.0256 -3.2406 0.2443 31 1 2.6176 -3.7827 1.9034 32 1 5.3155 -2.2750 0.2698 33 1 5.4178 -3.4502 1.6027 34 1 8.9322 -2.8180 0.7026 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260001058.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:20 Heat of formation + Delta-G solvation = -130.377608 kcal Electronic energy + Delta-G solvation = -15230.181684 eV Core-core repulsion = 12740.777837 eV Total energy + Delta-G solvation = -2489.403847 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.61105 -36.88902 -36.02774 -35.07498 -32.43076 -30.14132 -28.34051 -27.98425 -25.15626 -24.55311 -22.35585 -20.39086 -18.74350 -17.90516 -17.49587 -16.62780 -16.37852 -15.99517 -15.06199 -14.70708 -14.52610 -14.02359 -13.98355 -13.71522 -13.32582 -13.22808 -13.10449 -13.06321 -12.62724 -12.51709 -12.37985 -12.35021 -11.91575 -11.74307 -11.58445 -11.16595 -10.92404 -10.62520 -10.35700 -8.23572 -6.33046 1.38273 1.39151 1.52456 2.39203 2.53118 3.02627 3.13783 3.71341 3.83619 3.86670 4.06001 4.26171 4.27125 4.39616 4.50875 4.55578 4.70797 4.74292 4.82553 4.87931 4.99639 5.01992 5.07762 5.13830 5.21188 5.31897 5.45358 5.48914 5.55590 5.72889 6.15342 6.31644 6.78527 7.34881 8.88636 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.042313 B = 0.007995 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.583912 B = 3501.536269 C = 3769.736318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 C -0.140 4.140 4 C 0.239 3.761 5 C -0.167 4.167 6 O -0.389 6.389 7 C 0.028 3.972 8 C 0.062 3.938 9 H 0.072 0.928 10 C 0.034 3.966 11 C -0.533 4.533 12 H 0.054 0.946 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.964 3.036 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.279 1.279 19 O -0.381 6.381 20 H 0.073 0.927 21 H 0.054 0.946 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.038 0.962 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.118 0.882 32 H -0.002 1.002 33 H 0.024 0.976 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.768 4.914 0.819 14.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.118 4.118 3 C -0.197 4.197 4 C 0.162 3.838 5 C -0.224 4.224 6 O -0.310 6.310 7 C -0.048 4.048 8 C 0.005 3.995 9 H 0.090 0.910 10 C -0.003 4.003 11 C -0.571 4.571 12 H 0.073 0.927 13 C -0.195 4.195 14 N -0.572 5.572 15 Si 0.789 3.211 16 H -0.190 1.190 17 H -0.199 1.199 18 H -0.204 1.204 19 O -0.302 6.302 20 H 0.092 0.908 21 H 0.073 0.927 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.135 0.865 32 H 0.017 0.983 33 H 0.042 0.958 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.707 4.951 0.667 14.589 hybrid contribution 1.217 0.043 0.206 1.235 sum -12.490 4.994 0.873 13.480 Atomic orbital electron populations 1.21773 0.91891 1.02320 1.03144 1.21424 0.98051 0.96859 0.95433 1.21787 1.00564 0.94310 1.03058 1.23705 0.79856 0.83475 0.96718 1.22422 1.02976 1.01246 0.95786 1.88741 1.30053 1.16564 1.95667 1.24264 0.83707 0.94871 1.01975 1.23974 0.96362 0.81655 0.97494 0.90973 1.18971 0.89535 0.96135 0.95622 1.21494 0.91986 1.18204 1.25459 0.92734 1.25899 1.01021 0.96731 0.95868 1.70072 1.17320 1.33963 1.35812 0.85410 0.78563 0.78718 0.78444 1.18985 1.19866 1.20447 1.89335 1.20154 1.37232 1.83515 0.90775 0.92731 0.91032 0.92471 0.94320 0.90640 0.91078 0.92872 0.90000 0.88810 0.91484 0.86453 0.98344 0.95786 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.69 71.98 0.63 -2.33 16 2 C -0.10 -2.88 2.71 -10.79 -0.03 -2.91 16 3 C -0.14 -3.72 8.72 71.98 0.63 -3.09 16 4 C 0.24 8.15 0.81 30.60 0.02 8.17 16 5 C -0.17 -4.70 8.49 71.98 0.61 -4.09 16 6 O -0.39 -13.51 10.26 -126.22 -1.30 -14.80 16 7 C 0.03 1.01 7.54 72.63 0.55 1.56 16 8 C 0.06 2.70 3.37 31.25 0.11 2.81 16 9 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 10 C 0.03 1.83 4.75 29.85 0.14 1.97 16 11 C -0.53 -30.97 9.07 25.60 0.23 -30.74 16 12 H 0.05 3.13 7.74 -2.91 -0.02 3.11 16 13 C 0.00 0.15 5.46 84.66 0.46 0.62 16 14 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 15 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 O -0.38 -16.63 9.98 -126.22 -1.26 -17.89 16 20 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 21 H 0.05 1.28 7.73 -2.39 -0.02 1.26 16 22 H 0.07 1.36 6.41 -2.38 -0.02 1.34 16 23 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.04 1.25 7.66 -2.38 -0.02 1.23 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 1.64 6.47 -2.39 -0.02 1.63 16 27 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.08 2.16 6.49 -2.39 -0.02 2.15 16 29 H 0.09 2.14 6.41 -2.39 -0.02 2.12 16 30 H 0.07 2.46 8.03 -2.39 -0.02 2.44 16 31 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 32 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -65.37 274.38 4.16 -61.21 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.05 Total: 8.84 kcal Atomic # 6 Polarization: -31.38 SS G_CDS: 3.35 Total: -28.03 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.28 Total: -56.31 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -2.55 Total: -32.69 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -65.37 4.16 -61.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001058.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.165 kcal (2) G-P(sol) polarization free energy of solvation -65.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds