Wall clock time and date at job start Mon Mar 30 2020 02:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09006 * 110.36134 * 300.70372 * 5 2 1 7 7 O 1.44401 * 110.40117 * 63.02546 * 5 2 1 8 8 C 1.44293 * 104.61206 * 158.12698 * 7 5 2 9 9 C 1.54169 * 104.94140 * 336.36414 * 8 7 5 10 10 H 1.09000 * 110.34739 * 118.86323 * 9 8 7 11 11 C 1.53002 * 110.34910 * 241.02540 * 9 8 7 12 12 C 1.50693 * 109.47293 * 184.99972 * 11 9 8 13 13 H 1.08005 * 120.00253 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00121 * 179.97438 * 12 11 9 15 15 N 1.31509 * 119.99948 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00121 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47224 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47154 * 120.00279 * 16 14 12 19 19 H 1.48500 * 109.47353 * 240.00420 * 16 14 12 20 20 O 1.44399 * 104.99306 * 0.09469 * 9 8 7 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 30 30 H 1.09002 * 110.34184 * 95.23069 * 8 7 5 31 31 H 1.08997 * 110.34799 * 217.49482 * 8 7 5 32 32 H 1.08999 * 109.46782 * 304.99638 * 11 9 8 33 33 H 1.08995 * 109.46944 * 64.99818 * 11 9 8 34 34 H 0.97007 * 120.00422 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 1.6745 -1.7480 -1.2701 7 8 1.6290 -0.0163 -2.4405 8 6 2.5605 -0.4440 -3.4562 9 6 3.8111 -0.9034 -2.6804 10 1 4.0090 -1.9582 -2.8708 11 6 5.0227 -0.0563 -3.0747 12 6 6.2560 -0.5988 -2.3998 13 1 6.1830 -1.4613 -1.7539 14 6 7.4777 0.0059 -2.6069 15 7 7.5666 1.0564 -3.3931 16 14 9.0064 -0.6662 -1.7698 17 1 8.6407 -1.8445 -0.9433 18 1 9.9965 -1.0724 -2.7993 19 1 9.5974 0.3836 -0.9016 20 8 3.4833 -0.6998 -1.2890 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 -1.7489 1.2492 28 1 3.1300 -0.7217 1.2490 29 1 1.6767 -0.2075 2.1393 30 1 2.1434 -1.2730 -4.0280 31 1 2.8083 0.3866 -4.1171 32 1 5.1547 -0.0923 -4.1561 33 1 4.8618 0.9755 -2.7624 34 1 8.4261 1.4816 -3.5391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260004033.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:28 Heat of formation + Delta-G solvation = -115.669048 kcal Electronic energy + Delta-G solvation = -15204.627063 eV Core-core repulsion = 12715.861027 eV Total energy + Delta-G solvation = -2488.766036 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.93769 -36.17844 -34.41831 -33.03294 -30.54418 -27.11381 -26.96633 -26.70053 -24.43566 -23.07490 -20.53657 -18.77691 -16.86640 -15.92126 -15.75473 -15.37361 -14.86211 -14.40490 -13.66562 -13.51528 -13.18213 -12.49942 -12.18962 -12.12859 -11.90103 -11.74222 -11.37397 -11.34293 -11.13234 -10.79614 -10.64599 -10.56578 -10.53457 -10.41758 -9.89996 -9.37380 -9.04859 -8.91338 -8.37789 -6.00036 -4.00949 3.32588 3.39942 3.45157 4.14452 4.36127 4.47537 5.00792 5.13938 5.24853 5.35251 5.37669 5.46278 5.59380 5.72168 5.75131 5.88036 5.94532 5.96367 6.12218 6.18304 6.26769 6.28367 6.37560 6.56434 6.64643 6.76015 6.82559 7.35592 7.59568 7.83559 7.97229 8.38759 9.03449 9.62144 11.11611 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.039681 B = 0.008232 C = 0.007510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.450649 B = 3400.380120 C = 3727.478566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.061 4.061 3 C -0.134 4.134 4 C -0.139 4.139 5 C 0.230 3.770 6 H 0.059 0.941 7 O -0.383 6.383 8 C 0.018 3.982 9 C 0.055 3.945 10 H 0.068 0.932 11 C 0.024 3.976 12 C -0.510 4.510 13 H 0.058 0.942 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 O -0.354 6.354 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.089 -2.830 4.683 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.061 4.061 3 C -0.192 4.192 4 C -0.196 4.196 5 C 0.134 3.866 6 H 0.076 0.924 7 O -0.304 6.304 8 C -0.059 4.059 9 C -0.002 4.002 10 H 0.086 0.914 11 C -0.012 4.012 12 C -0.548 4.548 13 H 0.076 0.924 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 O -0.274 6.274 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.990 -2.529 4.778 13.153 hybrid contribution 0.926 -0.551 0.173 1.091 sum -11.065 -3.081 4.951 12.507 Atomic orbital electron populations 1.21798 0.93968 1.01534 1.02128 1.20590 0.95455 0.96984 0.93092 1.21725 1.02551 0.93834 1.01062 1.21793 1.02595 0.99359 0.95838 1.24376 0.81866 0.93767 0.86568 0.92406 1.89139 1.52944 1.68315 1.19989 1.24192 0.89227 1.00398 0.92068 1.23882 0.96158 1.00550 0.79603 0.91405 1.19297 0.89942 0.95230 0.96770 1.21164 0.91987 1.13818 1.27878 0.92374 1.24996 0.99117 0.95011 0.95384 1.69963 1.24973 1.21121 1.37666 0.86510 0.83002 0.79002 0.79355 1.19720 1.21077 1.21012 1.89394 1.18626 1.93426 1.25966 0.91914 0.92404 0.92994 0.93384 0.91249 0.92198 0.93021 0.91182 0.92471 0.92166 0.88676 0.95053 0.95308 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.36 37.16 0.31 -1.38 16 2 C -0.06 -0.92 0.71 -154.51 -0.11 -1.03 16 3 C -0.13 -2.14 8.16 37.15 0.30 -1.84 16 4 C -0.14 -1.90 8.35 37.16 0.31 -1.59 16 5 C 0.23 4.03 2.85 37.16 0.11 4.14 16 6 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 7 O -0.38 -7.01 10.25 -59.41 -0.61 -7.62 16 8 C 0.02 0.32 7.55 37.77 0.29 0.61 16 9 C 0.06 1.18 3.47 -26.12 -0.09 1.09 16 10 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 11 C 0.02 0.63 4.51 -27.89 -0.13 0.51 16 12 C -0.51 -14.61 9.00 -34.44 -0.31 -14.92 16 13 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 16 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 O -0.35 -7.62 9.84 -59.41 -0.58 -8.20 16 21 H 0.06 0.82 7.81 -51.93 -0.41 0.41 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 1.29 7.68 -51.93 -0.40 0.89 16 26 H 0.06 0.99 7.65 -51.93 -0.40 0.59 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.10 7.77 -51.93 -0.40 0.70 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.70 7.71 -51.93 -0.40 1.30 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 278.76 15.07 4.20 4.20 Total: -1.00 -30.60 278.76 -6.47 -37.07 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -5.77 Total: -3.21 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 0.58 Total: -12.91 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -1.19 Total: -15.82 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.60 -6.47 -37.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004033.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.601 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds