Wall clock time and date at job start Mon Mar 30 2020 02:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09006 * 110.36134 * 300.70372 * 5 2 1 7 7 O 1.44401 * 110.40117 * 63.02546 * 5 2 1 8 8 C 1.44293 * 104.61206 * 158.12698 * 7 5 2 9 9 C 1.54169 * 104.94140 * 336.36414 * 8 7 5 10 10 H 1.09000 * 110.34739 * 118.86323 * 9 8 7 11 11 C 1.53002 * 110.34910 * 241.02540 * 9 8 7 12 12 C 1.50693 * 109.47293 * 184.99972 * 11 9 8 13 13 H 1.08005 * 120.00253 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00121 * 179.97438 * 12 11 9 15 15 N 1.31509 * 119.99948 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00121 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47224 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47154 * 120.00279 * 16 14 12 19 19 H 1.48500 * 109.47353 * 240.00420 * 16 14 12 20 20 O 1.44399 * 104.99306 * 0.09469 * 9 8 7 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 30 30 H 1.09002 * 110.34184 * 95.23069 * 8 7 5 31 31 H 1.08997 * 110.34799 * 217.49482 * 8 7 5 32 32 H 1.08999 * 109.46782 * 304.99638 * 11 9 8 33 33 H 1.08995 * 109.46944 * 64.99818 * 11 9 8 34 34 H 0.97007 * 120.00422 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 1.6745 -1.7480 -1.2701 7 8 1.6290 -0.0163 -2.4405 8 6 2.5605 -0.4440 -3.4562 9 6 3.8111 -0.9034 -2.6804 10 1 4.0090 -1.9582 -2.8708 11 6 5.0227 -0.0563 -3.0747 12 6 6.2560 -0.5988 -2.3998 13 1 6.1830 -1.4613 -1.7539 14 6 7.4777 0.0059 -2.6069 15 7 7.5666 1.0564 -3.3931 16 14 9.0064 -0.6662 -1.7698 17 1 8.6407 -1.8445 -0.9433 18 1 9.9965 -1.0724 -2.7993 19 1 9.5974 0.3836 -0.9016 20 8 3.4833 -0.6998 -1.2890 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 -1.7489 1.2492 28 1 3.1300 -0.7217 1.2490 29 1 1.6767 -0.2075 2.1393 30 1 2.1434 -1.2730 -4.0280 31 1 2.8083 0.3866 -4.1171 32 1 5.1547 -0.0923 -4.1561 33 1 4.8618 0.9755 -2.7624 34 1 8.4261 1.4816 -3.5391 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260004033.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:28 Heat of formation + Delta-G solvation = -134.733427 kcal Electronic energy + Delta-G solvation = -15205.453757 eV Core-core repulsion = 12715.861027 eV Total energy + Delta-G solvation = -2489.592730 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.41564 -37.44697 -36.01851 -35.09578 -32.42522 -28.67544 -28.16287 -28.05417 -25.84698 -24.99913 -22.29541 -20.03678 -18.77362 -17.65355 -17.29361 -16.90273 -16.55785 -16.11094 -14.98252 -14.77466 -14.46911 -14.29303 -14.05746 -13.58400 -13.27709 -13.06745 -13.00693 -12.90971 -12.58433 -12.49302 -12.33485 -12.20736 -11.82265 -11.71463 -11.63391 -11.24088 -10.84548 -10.61175 -10.50325 -8.22338 -6.31643 1.37743 1.38795 1.52109 2.39539 2.71797 2.96865 3.13664 3.78141 3.79935 3.88167 4.01357 4.08205 4.23712 4.44644 4.57774 4.60332 4.78371 4.79508 4.89832 4.93064 4.99493 5.02691 5.14205 5.18491 5.27948 5.38033 5.45908 5.48956 5.55803 5.74667 6.09662 6.24592 6.80713 7.36127 8.89866 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.039681 B = 0.008232 C = 0.007510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.450649 B = 3400.380120 C = 3727.478566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.131 4.131 4 C -0.134 4.134 5 C 0.222 3.778 6 H 0.080 0.920 7 O -0.389 6.389 8 C 0.025 3.975 9 C 0.057 3.943 10 H 0.077 0.923 11 C 0.031 3.969 12 C -0.531 4.531 13 H 0.055 0.945 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.964 3.036 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.280 1.280 20 O -0.381 6.381 21 H 0.053 0.947 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.031 0.969 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.019 0.981 33 H -0.008 1.008 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.150 -4.033 5.731 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.065 4.065 3 C -0.188 4.188 4 C -0.191 4.191 5 C 0.127 3.873 6 H 0.097 0.903 7 O -0.310 6.310 8 C -0.052 4.052 9 C 0.000 4.000 10 H 0.095 0.905 11 C -0.006 4.006 12 C -0.569 4.569 13 H 0.073 0.927 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.788 3.212 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.206 1.206 20 O -0.302 6.302 21 H 0.072 0.928 22 H 0.097 0.903 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.037 0.963 33 H 0.011 0.989 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.068 -3.738 5.825 14.788 hybrid contribution 1.228 -0.143 -0.147 1.245 sum -11.841 -3.880 5.678 13.693 Atomic orbital electron populations 1.21744 0.91284 1.02833 1.02774 1.20737 0.97489 0.95796 0.92477 1.21678 1.00081 0.95269 1.01767 1.21764 1.00701 1.00594 0.96087 1.24815 0.79883 0.95243 0.87356 0.90307 1.89126 1.52639 1.68880 1.20336 1.24158 0.87866 1.01452 0.91724 1.23674 0.95827 0.99964 0.80551 0.90472 1.19116 0.91749 0.94021 0.95739 1.21514 0.93358 1.13911 1.28074 0.92698 1.25915 1.02582 0.95219 0.95969 1.70081 1.26037 1.22321 1.38895 0.85415 0.78805 0.78475 0.78464 1.18933 1.19865 1.20552 1.89363 1.21483 1.93626 1.25768 0.92779 0.90289 0.91368 0.90708 0.94950 0.93442 0.91358 0.94102 0.90152 0.88455 0.89230 0.96253 0.98913 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.36 71.98 0.60 -2.18 16 2 C -0.06 -1.84 0.71 -52.18 -0.04 -1.87 16 3 C -0.13 -4.13 8.16 71.98 0.59 -3.54 16 4 C -0.13 -3.41 8.35 71.98 0.60 -2.81 16 5 C 0.22 7.50 2.85 71.98 0.21 7.71 16 6 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 7 O -0.39 -13.80 10.25 -125.86 -1.29 -15.09 16 8 C 0.02 0.86 7.55 72.38 0.55 1.41 16 9 C 0.06 2.46 3.47 30.99 0.11 2.57 16 10 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 11 C 0.03 1.66 4.51 29.85 0.13 1.79 16 12 C -0.53 -31.07 9.00 25.60 0.23 -30.84 16 13 H 0.05 3.17 7.74 -2.91 -0.02 3.15 16 14 C 0.00 0.04 5.46 84.65 0.46 0.50 16 15 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 16 Si 0.96 45.41 29.54 68.60 2.03 47.44 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 20 O -0.38 -16.57 9.84 -125.86 -1.24 -17.81 16 21 H 0.05 1.27 7.81 -2.39 -0.02 1.25 16 22 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.03 1.23 7.68 -2.39 -0.02 1.21 16 26 H 0.05 1.58 7.65 -2.39 -0.02 1.56 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.04 1.27 7.77 -2.39 -0.02 1.25 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.09 3.22 7.71 -2.39 -0.02 3.20 16 32 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 33 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -66.94 278.76 4.26 -62.67 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.04 Total: 7.18 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 3.44 Total: -27.27 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.28 Total: -57.12 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -2.53 Total: -32.90 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -66.94 4.26 -62.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004033.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.062 kcal (2) G-P(sol) polarization free energy of solvation -66.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds