Wall clock time and date at job start Mon Mar 30 2020 02:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 C 1.53001 * 109.46945 * 239.99684 * 2 1 3 5 5 C 1.53005 * 109.46834 * 119.99784 * 2 1 3 6 6 H 1.09001 * 110.35404 * 180.87609 * 5 2 1 7 7 O 1.44395 * 110.39975 * 58.54488 * 5 2 1 8 8 C 1.44295 * 104.60751 * 201.86769 * 7 5 2 9 9 C 1.54171 * 104.93871 * 23.64746 * 8 7 5 10 10 H 1.09004 * 110.34314 * 241.13203 * 9 8 7 11 11 C 1.52995 * 110.35049 * 118.86403 * 9 8 7 12 12 C 1.50705 * 109.47538 * 174.99674 * 11 9 8 13 13 H 1.08001 * 119.99606 * 359.97438 * 12 11 9 14 14 C 1.37878 * 120.00171 * 179.97438 * 12 11 9 15 15 N 1.31513 * 120.00053 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00002 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46875 * 60.00162 * 16 14 12 18 18 H 1.48492 * 109.47291 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47314 * 300.00608 * 16 14 12 20 20 O 1.44297 * 104.94299 * 359.97438 * 9 8 7 21 21 H 1.09003 * 109.46807 * 300.00606 * 1 2 3 22 22 H 1.09002 * 109.46863 * 59.99972 * 1 2 3 23 23 H 1.08991 * 109.47510 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46771 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46936 * 299.99468 * 3 2 1 26 26 H 1.08996 * 109.47513 * 60.00154 * 3 2 1 27 27 H 1.08994 * 109.46910 * 300.00152 * 4 2 1 28 28 H 1.09002 * 109.47059 * 60.00464 * 4 2 1 29 29 H 1.09005 * 109.46263 * 180.02562 * 4 2 1 30 30 H 1.08999 * 110.34291 * 142.50923 * 8 7 5 31 31 H 1.08998 * 110.34835 * 264.77779 * 8 7 5 32 32 H 1.09000 * 109.47205 * 294.99782 * 11 9 8 33 33 H 1.09004 * 109.47347 * 54.99798 * 11 9 8 34 34 H 0.96996 * 120.00301 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1298 -0.7161 1.2718 7 8 1.5419 -2.0760 1.2869 8 6 1.6251 -2.4559 2.6765 9 6 1.6013 -1.1251 3.4544 10 1 2.5200 -1.0053 4.0287 11 6 0.3837 -1.0711 4.3793 12 6 0.4450 0.1794 5.2182 13 1 1.2701 0.8667 5.1034 14 6 -0.5524 0.4460 6.1321 15 7 -1.5569 -0.3912 6.2722 16 14 -0.4760 1.9957 7.1723 17 1 -0.4737 3.1872 6.2860 18 1 -1.6578 2.0481 8.0699 19 1 0.7646 1.9835 7.9884 20 8 1.5072 -0.1029 2.4403 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6766 -1.7489 -1.2491 28 1 1.6767 -0.2075 -2.1392 29 1 3.1301 -0.7217 -1.2489 30 1 0.7693 -3.0718 2.9529 31 1 2.5554 -2.9905 2.8682 32 1 -0.5272 -1.0628 3.7807 33 1 0.3828 -1.9455 5.0302 34 1 -2.2583 -0.2038 6.9154 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260004036.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:30 Heat of formation + Delta-G solvation = -115.591259 kcal Electronic energy + Delta-G solvation = -15205.932407 eV Core-core repulsion = 12717.169744 eV Total energy + Delta-G solvation = -2488.762663 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.94421 -36.17901 -34.42021 -33.02869 -30.54106 -27.11701 -26.95951 -26.69907 -24.43514 -23.07229 -20.53530 -18.77650 -16.86678 -15.91808 -15.75199 -15.37620 -14.86168 -14.41086 -13.66157 -13.51451 -13.19080 -12.49298 -12.18247 -12.12567 -11.89892 -11.73104 -11.38071 -11.33885 -11.11704 -10.79052 -10.66253 -10.54381 -10.52988 -10.44569 -9.89358 -9.38016 -9.06171 -8.91433 -8.36740 -5.99468 -4.00573 3.35480 3.39299 3.42759 4.14510 4.36217 4.47723 5.00860 5.14029 5.25005 5.35515 5.37882 5.46334 5.59520 5.72443 5.74899 5.88244 5.94529 5.96432 6.12645 6.18754 6.26752 6.28135 6.37638 6.56387 6.64747 6.76590 6.82934 7.35937 7.59547 7.84019 7.97398 8.39013 9.03244 9.62330 11.12114 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.039671 B = 0.008236 C = 0.007513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.638514 B = 3398.905691 C = 3725.737398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.061 4.061 3 C -0.139 4.139 4 C -0.137 4.137 5 C 0.230 3.770 6 H 0.059 0.941 7 O -0.383 6.383 8 C 0.018 3.982 9 C 0.055 3.945 10 H 0.068 0.932 11 C 0.025 3.975 12 C -0.512 4.512 13 H 0.057 0.943 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.894 3.106 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.277 1.277 20 O -0.354 6.354 21 H 0.069 0.931 22 H 0.047 0.953 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.029 0.971 33 H 0.031 0.969 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.850 -0.917 -11.287 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.061 4.061 3 C -0.196 4.196 4 C -0.194 4.194 5 C 0.134 3.866 6 H 0.076 0.924 7 O -0.304 6.304 8 C -0.059 4.059 9 C -0.002 4.002 10 H 0.086 0.914 11 C -0.012 4.012 12 C -0.550 4.550 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.537 5.537 16 Si 0.722 3.278 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 O -0.274 6.274 21 H 0.088 0.912 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.522 -0.850 -11.340 13.110 hybrid contribution 0.211 0.686 0.829 1.097 sum 6.734 -0.163 -10.511 12.484 Atomic orbital electron populations 1.21728 0.93177 1.02425 1.01844 1.20594 0.97554 0.95272 0.92706 1.21797 1.00431 0.94787 1.02586 1.21792 1.00470 1.00875 0.96265 1.24377 0.94888 0.79076 0.88234 0.92397 1.89138 1.86054 1.29606 1.25600 1.24194 1.02073 0.98695 0.80944 1.23869 1.02438 0.83821 0.90058 0.91404 1.19288 0.91011 0.97946 0.92914 1.21090 1.07885 1.06436 1.19604 0.92488 1.24991 0.95386 0.96785 0.97284 1.69941 1.11281 1.36457 1.36052 0.86623 0.77327 0.83734 0.80122 1.20199 1.21320 1.20291 1.89371 1.83825 1.35671 1.18527 0.91206 0.93392 0.92219 0.93017 0.92455 0.91222 0.91884 0.92421 0.93007 0.88679 0.92171 0.95308 0.95078 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.16 37.16 0.30 -1.85 16 2 C -0.06 -0.92 0.71 -154.50 -0.11 -1.03 16 3 C -0.14 -1.90 8.37 37.16 0.31 -1.59 16 4 C -0.14 -1.70 8.35 37.16 0.31 -1.39 16 5 C 0.23 4.03 2.86 37.16 0.11 4.14 16 6 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 7 O -0.38 -7.01 10.25 -59.42 -0.61 -7.62 16 8 C 0.02 0.32 7.56 37.77 0.29 0.60 16 9 C 0.06 1.19 3.47 -26.12 -0.09 1.09 16 10 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 11 C 0.03 0.66 4.51 -27.88 -0.13 0.53 16 12 C -0.51 -14.67 9.00 -34.44 -0.31 -14.98 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 16 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 O -0.35 -7.62 9.82 -59.42 -0.58 -8.20 16 21 H 0.07 1.30 7.64 -51.93 -0.40 0.90 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.99 7.69 -51.93 -0.40 0.60 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.09 7.82 -51.93 -0.41 0.69 16 27 H 0.06 0.83 7.76 -51.93 -0.40 0.42 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 1.70 7.71 -51.93 -0.40 1.30 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 278.75 15.07 4.20 4.20 Total: -1.00 -30.55 278.75 -6.47 -37.02 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.77 Total: -3.14 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 0.58 Total: -12.93 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.74 Total: -26.32 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -1.19 Total: -15.82 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.55 -6.47 -37.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004036.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.568 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds