Wall clock time and date at job start Mon Mar 30 2020 02:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 C 1.53001 * 109.46945 * 239.99684 * 2 1 3 5 5 C 1.53005 * 109.46834 * 119.99784 * 2 1 3 6 6 H 1.09001 * 110.35404 * 180.87609 * 5 2 1 7 7 O 1.44395 * 110.39975 * 58.54488 * 5 2 1 8 8 C 1.44295 * 104.60751 * 201.86769 * 7 5 2 9 9 C 1.54171 * 104.93871 * 23.64746 * 8 7 5 10 10 H 1.09004 * 110.34314 * 241.13203 * 9 8 7 11 11 C 1.52995 * 110.35049 * 118.86403 * 9 8 7 12 12 C 1.50705 * 109.47538 * 174.99674 * 11 9 8 13 13 H 1.08001 * 119.99606 * 359.97438 * 12 11 9 14 14 C 1.37878 * 120.00171 * 179.97438 * 12 11 9 15 15 N 1.31513 * 120.00053 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00002 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46875 * 60.00162 * 16 14 12 18 18 H 1.48492 * 109.47291 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47314 * 300.00608 * 16 14 12 20 20 O 1.44297 * 104.94299 * 359.97438 * 9 8 7 21 21 H 1.09003 * 109.46807 * 300.00606 * 1 2 3 22 22 H 1.09002 * 109.46863 * 59.99972 * 1 2 3 23 23 H 1.08991 * 109.47510 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46771 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46936 * 299.99468 * 3 2 1 26 26 H 1.08996 * 109.47513 * 60.00154 * 3 2 1 27 27 H 1.08994 * 109.46910 * 300.00152 * 4 2 1 28 28 H 1.09002 * 109.47059 * 60.00464 * 4 2 1 29 29 H 1.09005 * 109.46263 * 180.02562 * 4 2 1 30 30 H 1.08999 * 110.34291 * 142.50923 * 8 7 5 31 31 H 1.08998 * 110.34835 * 264.77779 * 8 7 5 32 32 H 1.09000 * 109.47205 * 294.99782 * 11 9 8 33 33 H 1.09004 * 109.47347 * 54.99798 * 11 9 8 34 34 H 0.96996 * 120.00301 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1298 -0.7161 1.2718 7 8 1.5419 -2.0760 1.2869 8 6 1.6251 -2.4559 2.6765 9 6 1.6013 -1.1251 3.4544 10 1 2.5200 -1.0053 4.0287 11 6 0.3837 -1.0711 4.3793 12 6 0.4450 0.1794 5.2182 13 1 1.2701 0.8667 5.1034 14 6 -0.5524 0.4460 6.1321 15 7 -1.5569 -0.3912 6.2722 16 14 -0.4760 1.9957 7.1723 17 1 -0.4737 3.1872 6.2860 18 1 -1.6578 2.0481 8.0699 19 1 0.7646 1.9835 7.9884 20 8 1.5072 -0.1029 2.4403 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6766 -1.7489 -1.2491 28 1 1.6767 -0.2075 -2.1392 29 1 3.1301 -0.7217 -1.2489 30 1 0.7693 -3.0718 2.9529 31 1 2.5554 -2.9905 2.8682 32 1 -0.5272 -1.0628 3.7807 33 1 0.3828 -1.9455 5.0302 34 1 -2.2583 -0.2038 6.9154 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260004036.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:30 Heat of formation + Delta-G solvation = -134.620523 kcal Electronic energy + Delta-G solvation = -15206.757578 eV Core-core repulsion = 12717.169744 eV Total energy + Delta-G solvation = -2489.587834 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.42341 -37.44871 -36.01981 -35.09285 -32.42231 -28.67371 -28.16399 -28.05352 -25.84633 -24.99760 -22.29501 -20.03764 -18.77028 -17.65102 -17.29328 -16.90666 -16.56245 -16.11249 -14.97736 -14.77753 -14.47467 -14.28312 -14.05538 -13.57728 -13.27162 -13.05733 -13.00535 -12.91940 -12.55768 -12.49030 -12.36024 -12.20821 -11.82092 -11.71570 -11.63725 -11.26079 -10.84372 -10.59978 -10.50397 -8.21800 -6.31335 1.38132 1.41574 1.49468 2.39831 2.71777 2.96993 3.13977 3.78250 3.79898 3.88137 4.01398 4.08197 4.23874 4.44663 4.57728 4.60320 4.78284 4.79469 4.89817 4.93023 4.99644 5.02533 5.14122 5.18691 5.27936 5.38100 5.45888 5.48984 5.55757 5.74629 6.09928 6.24832 6.80565 7.36272 8.90005 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.039671 B = 0.008236 C = 0.007513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.638514 B = 3398.905691 C = 3725.737398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.065 4.065 3 C -0.134 4.134 4 C -0.129 4.129 5 C 0.222 3.778 6 H 0.080 0.920 7 O -0.389 6.389 8 C 0.024 3.976 9 C 0.057 3.943 10 H 0.078 0.922 11 C 0.031 3.969 12 C -0.533 4.533 13 H 0.055 0.945 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.963 3.037 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.264 1.264 20 O -0.381 6.381 21 H 0.032 0.968 22 H 0.074 0.926 23 H 0.046 0.954 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.097 0.903 32 H -0.008 1.008 33 H 0.019 0.981 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.379 -0.258 -12.302 14.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.065 4.065 3 C -0.192 4.192 4 C -0.186 4.186 5 C 0.127 3.873 6 H 0.097 0.903 7 O -0.310 6.310 8 C -0.052 4.052 9 C 0.000 4.000 10 H 0.096 0.904 11 C -0.006 4.006 12 C -0.571 4.571 13 H 0.073 0.927 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.788 3.212 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.189 1.189 20 O -0.302 6.302 21 H 0.051 0.949 22 H 0.093 0.907 23 H 0.065 0.935 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.011 0.989 33 H 0.037 0.963 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.065 -0.198 -12.366 14.765 hybrid contribution -0.286 0.467 1.106 1.234 sum 7.779 0.269 -11.260 13.689 Atomic orbital electron populations 1.21680 0.94483 1.01352 1.01284 1.20741 0.96555 0.96320 0.92888 1.21768 1.01487 0.93602 1.02299 1.21739 1.01467 1.00085 0.95321 1.24816 0.95974 0.78649 0.87852 0.90275 1.89126 1.86450 1.30017 1.25407 1.24161 1.03789 0.96920 0.80356 1.23660 1.00207 0.85967 0.90167 0.90444 1.19107 0.91836 0.96641 0.92973 1.21464 1.08034 1.07368 1.20228 0.92674 1.25915 0.94891 1.00226 0.98603 1.70067 1.11996 1.38411 1.36828 0.85526 0.77979 0.79310 0.78400 1.19777 1.20557 1.18860 1.89340 1.84540 1.36444 1.19905 0.94908 0.90711 0.93532 0.91297 0.90157 0.94087 0.92810 0.90302 0.91364 0.89247 0.88456 0.98935 0.96295 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 8.16 71.98 0.59 -3.57 16 2 C -0.06 -1.84 0.71 -52.18 -0.04 -1.88 16 3 C -0.13 -3.39 8.37 71.98 0.60 -2.79 16 4 C -0.13 -2.79 8.35 71.98 0.60 -2.19 16 5 C 0.22 7.50 2.86 71.98 0.21 7.71 16 6 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 7 O -0.39 -13.82 10.25 -125.85 -1.29 -15.11 16 8 C 0.02 0.86 7.56 72.38 0.55 1.40 16 9 C 0.06 2.47 3.47 30.99 0.11 2.57 16 10 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 11 C 0.03 1.69 4.51 29.85 0.13 1.83 16 12 C -0.53 -31.22 9.00 25.60 0.23 -30.99 16 13 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 14 C 0.00 0.08 5.46 84.65 0.46 0.54 16 15 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 16 Si 0.96 45.36 29.54 68.60 2.03 47.38 16 17 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 20 O -0.38 -16.57 9.82 -125.85 -1.24 -17.81 16 21 H 0.03 1.25 7.64 -2.39 -0.02 1.23 16 22 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.05 1.56 7.69 -2.39 -0.02 1.54 16 24 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.04 1.26 7.82 -2.39 -0.02 1.24 16 27 H 0.05 1.27 7.76 -2.39 -0.02 1.25 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.09 3.21 7.71 -2.39 -0.02 3.20 16 31 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 32 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -66.89 278.75 4.27 -62.63 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 1.04 Total: 7.42 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 3.44 Total: -27.35 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.28 Total: -57.16 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -2.53 Total: -32.92 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -66.89 4.27 -62.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004036.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.993 kcal (2) G-P(sol) polarization free energy of solvation -66.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds