Wall clock time and date at job start Mon Mar 30 2020 02:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46942 * 2 1 4 4 C 1.52999 * 109.46708 * 240.00197 * 2 1 3 5 5 C 1.52998 * 109.47244 * 120.00294 * 2 1 3 6 6 H 1.08996 * 110.09279 * 299.85389 * 5 2 1 7 7 O 1.44384 * 110.11368 * 61.45273 * 5 2 1 8 8 C 1.44837 * 103.23276 * 158.46328 * 7 5 2 9 9 C 1.54449 * 102.89750 * 323.38695 * 8 7 5 10 10 H 1.08994 * 110.32412 * 262.79584 * 9 8 7 11 11 C 1.52996 * 110.32129 * 140.69635 * 9 8 7 12 12 C 1.50702 * 109.47159 * 174.99952 * 11 9 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 9 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 9 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 O 1.43777 * 110.16452 * 178.22957 * 5 2 1 21 21 H 1.09007 * 109.47252 * 299.99461 * 1 2 3 22 22 H 1.09002 * 109.47712 * 59.99558 * 1 2 3 23 23 H 1.08999 * 109.47076 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46521 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.46958 * 300.00365 * 3 2 1 26 26 H 1.08993 * 109.46687 * 60.00317 * 3 2 1 27 27 H 1.08999 * 109.47210 * 299.99745 * 4 2 1 28 28 H 1.09006 * 109.47137 * 60.00387 * 4 2 1 29 29 H 1.09000 * 109.46964 * 179.97438 * 4 2 1 30 30 H 1.09000 * 110.72821 * 205.03652 * 8 7 5 31 31 H 1.09005 * 110.88133 * 81.80854 * 8 7 5 32 32 H 1.09004 * 109.47066 * 55.00156 * 11 9 8 33 33 H 1.08994 * 109.47405 * 294.99986 * 11 9 8 34 34 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6844 -0.2139 2.1459 7 8 1.5947 -2.0947 1.2461 8 6 2.5348 -2.7501 2.1318 9 6 3.8634 -2.0265 1.8208 10 1 4.4524 -2.6055 1.1096 11 6 4.6588 -1.7997 3.1079 12 6 6.0018 -1.2052 2.7703 13 1 6.2619 -1.0083 1.7407 14 6 6.8962 -0.9067 3.7764 15 7 8.0661 -0.3828 3.4822 16 14 6.4462 -1.2466 5.5572 17 1 6.8752 -2.6205 5.9226 18 1 7.1298 -0.2643 6.4366 19 1 4.9761 -1.1251 5.7282 20 8 3.4771 -0.7662 1.2435 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 -1.7489 -1.2493 28 1 1.6766 -0.2073 -2.1393 29 1 3.1299 -0.7208 -1.2496 30 1 2.6098 -3.8119 1.8973 31 1 2.2517 -2.6057 3.1745 32 1 4.8012 -2.7516 3.6195 33 1 4.1119 -1.1163 3.7574 34 1 8.6954 -0.1732 4.1899 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260004039.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:31 Heat of formation + Delta-G solvation = -111.193239 kcal Electronic energy + Delta-G solvation = -15212.004374 eV Core-core repulsion = 12723.432423 eV Total energy + Delta-G solvation = -2488.571950 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.07841 -36.23192 -34.56060 -32.96482 -30.87299 -27.30148 -27.04976 -26.99476 -24.48683 -22.88678 -20.40274 -19.00034 -16.78353 -16.66631 -15.97504 -15.42090 -14.56807 -14.07702 -13.77728 -13.53694 -13.23699 -12.92875 -12.44436 -12.14961 -11.98916 -11.88412 -11.61698 -11.52953 -11.39970 -10.96825 -10.68290 -10.58908 -10.50491 -10.22885 -9.72002 -9.64548 -9.27748 -8.81551 -8.54896 -6.03264 -4.00746 3.28121 3.36328 3.38155 4.02051 4.30753 4.43734 4.98398 5.08008 5.17255 5.22715 5.31695 5.36715 5.59991 5.65665 5.73601 5.79773 5.82756 5.95309 6.03517 6.08964 6.22290 6.22481 6.28490 6.34972 6.58041 6.60615 6.68448 6.92071 7.22156 7.63283 7.78344 8.54069 9.03822 9.57544 11.10330 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.042907 B = 0.008247 C = 0.007709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.414753 B = 3394.311981 C = 3631.449261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.066 4.066 3 C -0.139 4.139 4 C -0.134 4.134 5 C 0.235 3.765 6 H 0.063 0.937 7 O -0.383 6.383 8 C 0.013 3.987 9 C 0.070 3.930 10 H 0.085 0.915 11 C -0.022 4.022 12 C -0.510 4.510 13 H 0.076 0.924 14 C 0.066 3.934 15 N -0.902 5.902 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.267 1.267 20 O -0.358 6.358 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.032 -1.182 -4.674 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.066 4.066 3 C -0.196 4.196 4 C -0.191 4.191 5 C 0.139 3.861 6 H 0.081 0.919 7 O -0.303 6.303 8 C -0.063 4.063 9 C 0.012 3.988 10 H 0.103 0.897 11 C -0.060 4.060 12 C -0.548 4.548 13 H 0.094 0.906 14 C -0.135 4.135 15 N -0.541 5.541 16 Si 0.704 3.296 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.192 1.192 20 O -0.278 6.278 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.908 -1.040 -4.790 14.747 hybrid contribution -0.040 -0.197 1.308 1.323 sum -13.948 -1.237 -3.482 14.430 Atomic orbital electron populations 1.21792 0.93948 1.02228 1.01459 1.20694 0.95558 0.95840 0.94529 1.21788 1.02709 0.93862 1.01257 1.21725 1.02097 0.99983 0.95304 1.24254 0.81441 0.83674 0.96715 0.91950 1.89319 1.52379 1.21527 1.67086 1.24432 0.88471 0.98841 0.94582 1.23562 0.93999 0.83614 0.97577 0.89683 1.19932 0.96840 0.97092 0.92111 1.20992 0.97185 1.40854 0.95751 0.90631 1.25014 0.94877 0.94765 0.98839 1.69909 1.07492 1.43776 1.32914 0.86829 0.79002 0.78254 0.85467 1.20262 1.21271 1.19208 1.89007 1.18500 1.37521 1.82821 0.92857 0.92446 0.92003 0.91073 0.92558 0.92810 0.92383 0.93214 0.91662 0.88305 0.91280 0.95717 0.95946 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.35 37.16 0.31 -1.34 16 2 C -0.07 -0.96 0.71 -154.51 -0.11 -1.07 16 3 C -0.14 -1.93 8.35 37.16 0.31 -1.62 16 4 C -0.13 -1.91 8.17 37.16 0.30 -1.61 16 5 C 0.23 4.07 2.94 37.16 0.11 4.18 16 6 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 7 O -0.38 -6.50 10.26 -59.28 -0.61 -7.11 16 8 C 0.01 0.22 7.36 37.92 0.28 0.50 16 9 C 0.07 1.43 3.65 -25.97 -0.09 1.33 16 10 H 0.09 1.75 8.14 -51.93 -0.42 1.32 16 11 C -0.02 -0.53 3.65 -27.88 -0.10 -0.63 16 12 C -0.51 -14.70 9.55 -34.44 -0.33 -15.03 16 13 H 0.08 2.39 7.99 -52.49 -0.42 1.97 16 14 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 16 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 20 O -0.36 -7.55 9.57 -59.28 -0.57 -8.11 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.77 7.75 -51.93 -0.40 0.37 16 24 H 0.07 1.15 7.76 -51.93 -0.40 0.74 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.84 7.67 -51.93 -0.40 0.44 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.05 7.67 -51.93 -0.40 0.65 16 30 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.07 1.09 7.86 -51.93 -0.41 0.68 16 32 H 0.02 0.56 7.58 -51.93 -0.39 0.16 16 33 H 0.02 0.54 7.19 -51.93 -0.37 0.17 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 275.13 15.07 4.15 4.15 Total: -1.00 -31.12 275.13 -6.09 -37.21 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -5.75 Total: -2.37 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 0.58 Total: -13.45 kcal Atomic # 7 Polarization: -28.06 SS G_CDS: 0.77 Total: -27.29 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -1.18 Total: -15.22 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.12 -6.09 -37.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004039.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.986 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds