Wall clock time and date at job start Mon Mar 30 2020 02:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46942 * 2 1 4 4 C 1.52999 * 109.46708 * 240.00197 * 2 1 3 5 5 C 1.52998 * 109.47244 * 120.00294 * 2 1 3 6 6 H 1.08996 * 110.09279 * 299.85389 * 5 2 1 7 7 O 1.44384 * 110.11368 * 61.45273 * 5 2 1 8 8 C 1.44837 * 103.23276 * 158.46328 * 7 5 2 9 9 C 1.54449 * 102.89750 * 323.38695 * 8 7 5 10 10 H 1.08994 * 110.32412 * 262.79584 * 9 8 7 11 11 C 1.52996 * 110.32129 * 140.69635 * 9 8 7 12 12 C 1.50702 * 109.47159 * 174.99952 * 11 9 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 9 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 9 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 O 1.43777 * 110.16452 * 178.22957 * 5 2 1 21 21 H 1.09007 * 109.47252 * 299.99461 * 1 2 3 22 22 H 1.09002 * 109.47712 * 59.99558 * 1 2 3 23 23 H 1.08999 * 109.47076 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46521 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.46958 * 300.00365 * 3 2 1 26 26 H 1.08993 * 109.46687 * 60.00317 * 3 2 1 27 27 H 1.08999 * 109.47210 * 299.99745 * 4 2 1 28 28 H 1.09006 * 109.47137 * 60.00387 * 4 2 1 29 29 H 1.09000 * 109.46964 * 179.97438 * 4 2 1 30 30 H 1.09000 * 110.72821 * 205.03652 * 8 7 5 31 31 H 1.09005 * 110.88133 * 81.80854 * 8 7 5 32 32 H 1.09004 * 109.47066 * 55.00156 * 11 9 8 33 33 H 1.08994 * 109.47405 * 294.99986 * 11 9 8 34 34 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.6844 -0.2139 2.1459 7 8 1.5947 -2.0947 1.2461 8 6 2.5348 -2.7501 2.1318 9 6 3.8634 -2.0265 1.8208 10 1 4.4524 -2.6055 1.1096 11 6 4.6588 -1.7997 3.1079 12 6 6.0018 -1.2052 2.7703 13 1 6.2619 -1.0083 1.7407 14 6 6.8962 -0.9067 3.7764 15 7 8.0661 -0.3828 3.4822 16 14 6.4462 -1.2466 5.5572 17 1 6.8752 -2.6205 5.9226 18 1 7.1298 -0.2643 6.4366 19 1 4.9761 -1.1251 5.7282 20 8 3.4771 -0.7662 1.2435 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 -1.7489 -1.2493 28 1 1.6766 -0.2073 -2.1393 29 1 3.1299 -0.7208 -1.2496 30 1 2.6098 -3.8119 1.8973 31 1 2.2517 -2.6057 3.1745 32 1 4.8012 -2.7516 3.6195 33 1 4.1119 -1.1163 3.7574 34 1 8.6954 -0.1732 4.1899 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260004039.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:31 Heat of formation + Delta-G solvation = -131.547498 kcal Electronic energy + Delta-G solvation = -15212.887001 eV Core-core repulsion = 12723.432423 eV Total energy + Delta-G solvation = -2489.454577 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.48935 -37.45421 -36.06927 -35.01649 -32.74357 -28.99866 -28.17220 -28.07512 -25.86546 -24.68123 -22.15709 -20.21868 -18.93335 -18.09354 -17.36880 -16.78956 -16.50830 -15.53096 -15.07673 -14.96258 -14.57475 -14.54021 -14.13040 -13.67505 -13.40346 -13.31553 -13.02762 -12.92879 -12.52378 -12.45129 -12.20395 -11.96067 -11.80546 -11.71500 -11.63526 -11.35318 -11.06916 -10.78648 -10.37569 -8.28904 -6.33178 1.34362 1.37498 1.48433 2.35252 2.66805 2.95632 3.09278 3.70882 3.82624 3.87950 4.01783 4.07476 4.22494 4.41298 4.57876 4.60966 4.67818 4.78227 4.79494 4.92192 4.96830 5.02221 5.04280 5.13037 5.16470 5.29094 5.38710 5.46366 5.52292 5.60451 6.18086 6.28709 6.73394 7.29225 8.88594 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.042907 B = 0.008247 C = 0.007709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.414753 B = 3394.311981 C = 3631.449261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.069 4.069 3 C -0.136 4.136 4 C -0.129 4.129 5 C 0.227 3.773 6 H 0.065 0.935 7 O -0.380 6.380 8 C 0.023 3.977 9 C 0.064 3.936 10 H 0.073 0.927 11 C -0.018 4.018 12 C -0.522 4.522 13 H 0.024 0.976 14 C 0.000 4.000 15 N -0.953 5.953 16 Si 0.954 3.046 17 H -0.260 1.260 18 H -0.285 1.285 19 H -0.246 1.246 20 O -0.388 6.388 21 H 0.060 0.940 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.037 0.963 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.035 0.965 30 H 0.129 0.871 31 H 0.084 0.916 32 H 0.046 0.954 33 H 0.022 0.978 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.622 -1.884 -3.596 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.069 4.069 3 C -0.193 4.193 4 C -0.187 4.187 5 C 0.132 3.868 6 H 0.083 0.917 7 O -0.300 6.300 8 C -0.053 4.053 9 C 0.007 3.993 10 H 0.091 0.909 11 C -0.055 4.055 12 C -0.560 4.560 13 H 0.043 0.957 14 C -0.196 4.196 15 N -0.594 5.594 16 Si 0.777 3.223 17 H -0.184 1.184 18 H -0.211 1.211 19 H -0.169 1.169 20 O -0.310 6.310 21 H 0.079 0.921 22 H 0.097 0.903 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.147 0.853 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.522 -1.754 -3.729 17.029 hybrid contribution 0.813 0.067 0.861 1.186 sum -15.709 -1.687 -2.868 16.058 Atomic orbital electron populations 1.21742 0.91415 1.02525 1.02973 1.20803 0.97455 0.95508 0.93119 1.21769 1.00588 0.94116 1.02856 1.21681 1.00214 1.00287 0.96474 1.24547 0.79708 0.84195 0.98378 0.91743 1.89317 1.52115 1.21292 1.67313 1.24449 0.85700 0.99802 0.95384 1.23470 0.95946 0.84114 0.95796 0.90895 1.19860 0.94293 0.97356 0.93987 1.21281 0.99953 1.41174 0.93641 0.95724 1.26076 0.94511 0.94365 1.04629 1.70085 1.09057 1.45438 1.34849 0.85612 0.79832 0.78752 0.78141 1.18447 1.21134 1.16942 1.88998 1.21111 1.37971 1.82908 0.92051 0.90282 0.92283 0.94330 0.89999 0.92190 0.92599 0.90759 0.94535 0.85304 0.89786 0.93612 0.95934 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.35 71.98 0.60 -2.13 16 2 C -0.07 -1.89 0.71 -52.18 -0.04 -1.93 16 3 C -0.14 -3.66 8.35 71.98 0.60 -3.06 16 4 C -0.13 -3.58 8.17 71.98 0.59 -2.99 16 5 C 0.23 7.63 2.94 71.98 0.21 7.84 16 6 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 7 O -0.38 -12.10 10.26 -125.98 -1.29 -13.40 16 8 C 0.02 0.70 7.36 72.47 0.53 1.24 16 9 C 0.06 2.62 3.65 31.09 0.11 2.73 16 10 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 11 C -0.02 -0.82 3.65 29.85 0.11 -0.71 16 12 C -0.52 -31.06 9.55 25.60 0.24 -30.82 16 13 H 0.02 1.65 7.99 -2.91 -0.02 1.63 16 14 C 0.00 0.02 5.47 84.66 0.46 0.49 16 15 N -0.95 -61.23 13.96 21.45 0.30 -60.93 16 16 Si 0.95 44.17 27.47 68.60 1.88 46.06 16 17 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 19 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 20 O -0.39 -16.70 9.57 -125.98 -1.21 -17.91 16 21 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 22 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.06 1.29 7.75 -2.39 -0.02 1.27 16 24 H 0.04 1.27 7.76 -2.39 -0.02 1.25 16 25 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.05 1.54 7.67 -2.39 -0.02 1.53 16 28 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.04 1.20 7.67 -2.39 -0.02 1.18 16 30 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.08 2.35 7.86 -2.38 -0.02 2.33 16 32 H 0.05 1.95 7.58 -2.38 -0.02 1.94 16 33 H 0.02 1.05 7.19 -2.39 -0.02 1.03 16 34 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -69.48 275.13 4.10 -65.38 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.99 Total: 10.14 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 3.43 Total: -29.35 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.30 Total: -60.93 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -2.50 Total: -31.30 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.06 kcal Total: -69.48 4.10 -65.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004039.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.168 kcal (2) G-P(sol) polarization free energy of solvation -69.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds