Wall clock time and date at job start Mon Mar 30 2020 02:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81399 * 109.47331 * 2 1 4 4 C 1.81406 * 102.99931 * 185.33645 * 3 2 1 5 5 C 1.50696 * 109.47315 * 57.82238 * 4 3 2 6 6 H 1.07999 * 120.00489 * 243.82429 * 5 4 3 7 7 C 1.37879 * 119.99559 * 63.82570 * 5 4 3 8 8 N 1.31520 * 119.99745 * 185.20157 * 7 5 4 9 9 Si 1.86794 * 120.00142 * 5.20013 * 7 5 4 10 10 H 1.48500 * 109.47151 * 88.39682 * 9 7 5 11 11 H 1.48502 * 109.47214 * 208.39513 * 9 7 5 12 12 H 1.48496 * 109.47235 * 328.39520 * 9 7 5 13 13 C 1.53002 * 109.46794 * 297.82554 * 4 3 2 14 14 C 1.53003 * 109.46917 * 179.97438 * 13 4 3 15 15 C 1.53001 * 109.46924 * 59.99865 * 14 13 4 16 16 C 1.52994 * 109.47563 * 299.99995 * 15 14 13 17 17 C 1.53001 * 109.47039 * 177.82835 * 4 3 2 18 18 H 1.08994 * 109.47145 * 180.02562 * 1 2 3 19 19 H 1.09006 * 109.46281 * 299.99794 * 1 2 3 20 20 H 1.08992 * 109.47151 * 59.99689 * 1 2 3 21 21 H 1.09007 * 109.47435 * 120.00596 * 2 1 3 22 22 H 1.09004 * 109.46965 * 239.99930 * 2 1 3 23 23 H 0.97002 * 119.99943 * 180.02562 * 8 7 5 24 24 H 1.09000 * 109.47155 * 299.99837 * 13 4 3 25 25 H 1.09000 * 109.47201 * 60.00232 * 13 4 3 26 26 H 1.08996 * 109.47193 * 300.00395 * 14 13 4 27 27 H 1.08999 * 109.47438 * 180.02562 * 14 13 4 28 28 H 1.09003 * 109.47456 * 180.02562 * 15 14 13 29 29 H 1.09000 * 109.47198 * 60.00096 * 15 14 13 30 30 H 1.09000 * 109.46946 * 300.00256 * 16 15 14 31 31 H 1.08999 * 109.47801 * 180.02562 * 16 15 14 32 32 H 1.09008 * 109.46668 * 299.99771 * 17 4 3 33 33 H 1.08996 * 109.47065 * 59.99960 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9300 1.5082 -0.1644 5 6 4.2357 0.7380 -1.4231 6 1 4.7072 -0.2317 -1.3618 7 6 3.9135 1.2714 -2.6530 8 7 4.0857 0.5582 -3.7445 9 14 3.2324 3.0069 -2.7690 10 1 4.3548 3.9725 -2.8837 11 1 2.3602 3.1174 -3.9657 12 1 2.4409 3.3106 -1.5498 13 6 4.4700 0.7431 1.0455 14 6 5.9841 0.5721 0.9066 15 6 6.6483 1.9486 0.8357 16 6 6.1083 2.7138 -0.3742 17 6 4.5938 2.8850 -0.2349 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3632 0.5139 0.8901 20 1 -0.3633 0.5138 -0.8899 21 1 1.8934 -0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 3.8594 0.9336 -4.6099 24 1 4.2489 1.3001 1.9560 25 1 3.9971 -0.2377 1.0958 26 1 6.2048 0.0149 -0.0038 27 1 6.3688 0.0266 1.7683 28 1 7.7269 1.8269 0.7362 29 1 6.4276 2.5059 1.7461 30 1 6.3290 2.1565 -1.2846 31 1 6.5818 3.6943 -0.4250 32 1 4.2090 3.4301 -1.0969 33 1 4.3727 3.4419 0.6756 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260069010.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:46 Heat of formation + Delta-G solvation = -21.124460 kcal Electronic energy + Delta-G solvation = -13441.480343 eV Core-core repulsion = 11399.566939 eV Total energy + Delta-G solvation = -2041.913404 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.92167 -32.68256 -32.02612 -30.24266 -30.06235 -24.99597 -23.00245 -21.67988 -21.25617 -18.74223 -16.46398 -15.40243 -15.02303 -14.36644 -14.00997 -13.67346 -13.38514 -12.78277 -12.46071 -12.31272 -12.12832 -11.51825 -11.45790 -11.09696 -10.88496 -10.60555 -10.39126 -10.27737 -10.00993 -9.76378 -9.58887 -9.26001 -9.08795 -8.58632 -8.21070 -6.22574 -6.20656 -4.17184 2.95771 3.34177 3.50787 3.70277 3.92622 4.49501 5.28455 5.51700 5.57443 5.67608 5.69070 5.80833 5.99581 6.12704 6.16031 6.27135 6.32523 6.34300 6.36003 6.38096 6.50815 6.56457 6.66627 6.79896 6.86049 6.98758 7.05132 7.13697 7.21581 7.58106 8.33262 8.77119 9.42627 10.86813 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.023787 B = 0.018581 C = 0.013558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.843819 B = 1506.557069 C = 2064.639065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.068 4.068 3 S -0.372 6.372 4 C 0.106 3.894 5 C -0.493 4.493 6 H 0.080 0.920 7 C 0.093 3.907 8 N -0.879 5.879 9 Si 0.847 3.153 10 H -0.289 1.289 11 H -0.302 1.302 12 H -0.196 1.196 13 C -0.089 4.089 14 C -0.109 4.109 15 C -0.109 4.109 16 C -0.106 4.106 17 C -0.097 4.097 18 H 0.055 0.945 19 H 0.051 0.949 20 H 0.057 0.943 21 H 0.060 0.940 22 H 0.088 0.912 23 H 0.267 0.733 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.028 1.391 7.463 7.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.216 4.216 3 S -0.139 6.139 4 C 0.000 4.000 5 C -0.535 4.535 6 H 0.097 0.903 7 C -0.115 4.115 8 N -0.515 5.515 9 Si 0.679 3.321 10 H -0.217 1.217 11 H -0.230 1.230 12 H -0.121 1.121 13 C -0.129 4.129 14 C -0.148 4.148 15 C -0.147 4.147 16 C -0.145 4.145 17 C -0.137 4.137 18 H 0.074 0.926 19 H 0.070 0.930 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.106 0.894 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.756 2.309 7.403 7.792 hybrid contribution 0.342 -0.226 -0.465 0.620 sum -0.414 2.083 6.939 7.257 Atomic orbital electron populations 1.21509 0.94543 1.00857 1.01991 1.22909 0.97331 0.96978 1.04348 1.86408 1.17822 1.13090 1.96572 1.20498 0.86380 0.95521 0.97637 1.20833 1.40030 1.04776 0.87848 0.90250 1.24981 0.93219 0.97964 0.95305 1.69917 1.45830 1.37219 0.98510 0.87524 0.79764 0.84843 0.79968 1.21684 1.22981 1.12058 1.21605 0.95231 0.99343 0.96674 1.21499 0.95320 0.96719 1.01263 1.21432 0.98592 0.96697 0.97964 1.21465 0.94697 0.98703 0.99611 1.21711 0.95637 0.96612 0.99708 0.92627 0.92952 0.92371 0.92140 0.89377 0.92335 0.93491 0.93048 0.90602 0.93877 0.93090 0.93284 0.90041 0.93785 0.92989 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.92 37.16 0.37 -1.82 16 2 C -0.07 -1.35 5.89 37.16 0.22 -1.14 16 3 S -0.37 -8.35 16.85 -107.50 -1.81 -10.16 16 4 C 0.11 2.37 0.39 -91.77 -0.04 2.34 16 5 C -0.49 -12.72 5.69 -34.44 -0.20 -12.92 16 6 H 0.08 2.23 7.10 -52.49 -0.37 1.85 16 7 C 0.09 2.55 5.41 -17.82 -0.10 2.45 16 8 N -0.88 -25.66 13.96 55.43 0.77 -24.89 16 9 Si 0.85 21.23 23.26 -169.99 -3.95 17.28 16 10 H -0.29 -7.16 7.00 56.52 0.40 -6.77 16 11 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 12 H -0.20 -4.76 4.46 67.78 0.30 -4.45 16 13 C -0.09 -1.75 4.57 -26.73 -0.12 -1.88 16 14 C -0.11 -1.96 5.70 -26.73 -0.15 -2.12 16 15 C -0.11 -1.85 5.92 -26.73 -0.16 -2.01 16 16 C -0.11 -2.07 5.70 -26.71 -0.15 -2.22 16 17 C -0.10 -2.09 4.10 -26.70 -0.11 -2.20 16 18 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 19 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 20 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 21 H 0.06 1.13 7.32 -51.92 -0.38 0.75 16 22 H 0.09 1.98 7.56 -51.92 -0.39 1.58 16 23 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 1.02 6.92 -51.93 -0.36 0.66 16 26 H 0.08 1.52 6.69 -51.93 -0.35 1.17 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.79 7.22 -51.93 -0.37 1.41 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 1.21 2.47 -51.92 -0.13 1.08 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 252.82 15.07 3.81 3.81 Total: -1.00 -27.85 252.82 -7.02 -34.87 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.40 Total: 0.60 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -0.44 Total: -21.51 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 0.77 Total: -24.89 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -3.95 Total: 17.28 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.81 Total: -10.16 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.85 -7.02 -34.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260069010.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.746 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds