Wall clock time and date at job start Mon Mar 30 2020 02:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81399 * 109.47331 * 2 1 4 4 C 1.81406 * 102.99931 * 185.33645 * 3 2 1 5 5 C 1.50696 * 109.47315 * 57.82238 * 4 3 2 6 6 H 1.07999 * 120.00489 * 243.82429 * 5 4 3 7 7 C 1.37879 * 119.99559 * 63.82570 * 5 4 3 8 8 N 1.31520 * 119.99745 * 185.20157 * 7 5 4 9 9 Si 1.86794 * 120.00142 * 5.20013 * 7 5 4 10 10 H 1.48500 * 109.47151 * 88.39682 * 9 7 5 11 11 H 1.48502 * 109.47214 * 208.39513 * 9 7 5 12 12 H 1.48496 * 109.47235 * 328.39520 * 9 7 5 13 13 C 1.53002 * 109.46794 * 297.82554 * 4 3 2 14 14 C 1.53003 * 109.46917 * 179.97438 * 13 4 3 15 15 C 1.53001 * 109.46924 * 59.99865 * 14 13 4 16 16 C 1.52994 * 109.47563 * 299.99995 * 15 14 13 17 17 C 1.53001 * 109.47039 * 177.82835 * 4 3 2 18 18 H 1.08994 * 109.47145 * 180.02562 * 1 2 3 19 19 H 1.09006 * 109.46281 * 299.99794 * 1 2 3 20 20 H 1.08992 * 109.47151 * 59.99689 * 1 2 3 21 21 H 1.09007 * 109.47435 * 120.00596 * 2 1 3 22 22 H 1.09004 * 109.46965 * 239.99930 * 2 1 3 23 23 H 0.97002 * 119.99943 * 180.02562 * 8 7 5 24 24 H 1.09000 * 109.47155 * 299.99837 * 13 4 3 25 25 H 1.09000 * 109.47201 * 60.00232 * 13 4 3 26 26 H 1.08996 * 109.47193 * 300.00395 * 14 13 4 27 27 H 1.08999 * 109.47438 * 180.02562 * 14 13 4 28 28 H 1.09003 * 109.47456 * 180.02562 * 15 14 13 29 29 H 1.09000 * 109.47198 * 60.00096 * 15 14 13 30 30 H 1.09000 * 109.46946 * 300.00256 * 16 15 14 31 31 H 1.08999 * 109.47801 * 180.02562 * 16 15 14 32 32 H 1.09008 * 109.46668 * 299.99771 * 17 4 3 33 33 H 1.08996 * 109.47065 * 59.99960 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9300 1.5082 -0.1644 5 6 4.2357 0.7380 -1.4231 6 1 4.7072 -0.2317 -1.3618 7 6 3.9135 1.2714 -2.6530 8 7 4.0857 0.5582 -3.7445 9 14 3.2324 3.0069 -2.7690 10 1 4.3548 3.9725 -2.8837 11 1 2.3602 3.1174 -3.9657 12 1 2.4409 3.3106 -1.5498 13 6 4.4700 0.7431 1.0455 14 6 5.9841 0.5721 0.9066 15 6 6.6483 1.9486 0.8357 16 6 6.1083 2.7138 -0.3742 17 6 4.5938 2.8850 -0.2349 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3632 0.5139 0.8901 20 1 -0.3633 0.5138 -0.8899 21 1 1.8934 -0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 3.8594 0.9336 -4.6099 24 1 4.2489 1.3001 1.9560 25 1 3.9971 -0.2377 1.0958 26 1 6.2048 0.0149 -0.0038 27 1 6.3688 0.0266 1.7683 28 1 7.7269 1.8269 0.7362 29 1 6.4276 2.5059 1.7461 30 1 6.3290 2.1565 -1.2846 31 1 6.5818 3.6943 -0.4250 32 1 4.2090 3.4301 -1.0969 33 1 4.3727 3.4419 0.6756 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260069010.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:45 Heat of formation + Delta-G solvation = -37.026907 kcal Electronic energy + Delta-G solvation = -13442.169925 eV Core-core repulsion = 11399.566939 eV Total energy + Delta-G solvation = -2042.602986 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.55842 -34.66441 -33.53956 -31.95955 -31.63645 -26.94773 -24.53829 -23.25409 -22.84704 -20.52093 -18.36737 -17.19808 -16.83943 -16.00746 -15.59503 -15.34099 -15.05804 -14.54296 -14.23186 -13.87442 -13.77161 -13.19508 -13.01176 -12.84112 -12.46048 -12.19542 -12.09723 -11.96886 -11.78993 -11.51624 -11.21974 -10.95078 -10.82167 -10.56444 -10.06280 -8.35144 -8.03869 -6.29731 1.16712 1.31652 1.48337 1.72283 2.10610 2.42958 3.23050 3.95773 4.03195 4.18867 4.23177 4.31796 4.54362 4.60108 4.65198 4.70768 4.74700 4.79051 4.86206 4.93317 5.03962 5.08863 5.13335 5.27261 5.37811 5.43979 5.48853 5.53198 5.55852 5.77823 6.23486 6.64473 7.31596 8.77793 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.023787 B = 0.018581 C = 0.013558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.843819 B = 1506.557069 C = 2064.639065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.062 4.062 3 S -0.381 6.381 4 C 0.102 3.898 5 C -0.478 4.478 6 H 0.046 0.954 7 C 0.049 3.951 8 N -0.929 5.929 9 Si 0.888 3.112 10 H -0.286 1.286 11 H -0.318 1.318 12 H -0.179 1.179 13 C -0.086 4.086 14 C -0.107 4.107 15 C -0.104 4.104 16 C -0.107 4.107 17 C -0.102 4.102 18 H 0.083 0.917 19 H 0.067 0.933 20 H 0.047 0.953 21 H 0.076 0.924 22 H 0.055 0.945 23 H 0.264 0.736 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.215 2.255 10.135 10.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.210 4.210 3 S -0.149 6.149 4 C -0.005 4.005 5 C -0.519 4.519 6 H 0.064 0.936 7 C -0.154 4.154 8 N -0.568 5.568 9 Si 0.720 3.280 10 H -0.214 1.214 11 H -0.248 1.248 12 H -0.103 1.103 13 C -0.126 4.126 14 C -0.146 4.146 15 C -0.141 4.141 16 C -0.146 4.146 17 C -0.141 4.141 18 H 0.102 0.898 19 H 0.086 0.914 20 H 0.067 0.933 21 H 0.095 0.905 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.930 3.175 10.093 10.621 hybrid contribution 0.382 -0.579 -1.211 1.396 sum -0.547 2.596 8.881 9.269 Atomic orbital electron populations 1.21496 0.91737 1.02818 1.02237 1.22983 0.99709 0.94775 1.03515 1.86289 1.16866 1.15382 1.96323 1.20587 0.86407 0.96360 0.97154 1.20884 1.38316 1.03433 0.89232 0.93615 1.25534 0.94122 1.00412 0.95296 1.70023 1.49071 1.38755 0.98954 0.86942 0.79246 0.82119 0.79710 1.21449 1.24799 1.10283 1.21586 0.96302 0.98737 0.95931 1.21471 0.94338 0.97717 1.01120 1.21420 0.99618 0.95539 0.97524 1.21453 0.93722 0.99943 0.99471 1.21757 0.96802 0.95658 0.99862 0.89833 0.91410 0.93346 0.90545 0.92575 0.92725 0.91457 0.93785 0.93685 0.90772 0.90978 0.90843 0.93521 0.91497 0.94823 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.85 9.92 71.98 0.71 -3.14 16 2 C -0.06 -2.38 5.89 71.98 0.42 -1.96 16 3 S -0.38 -16.38 16.85 -56.49 -0.95 -17.34 16 4 C 0.10 4.45 0.39 -11.54 0.00 4.44 16 5 C -0.48 -25.15 5.69 25.60 0.15 -25.01 16 6 H 0.05 2.68 7.10 -2.91 -0.02 2.66 16 7 C 0.05 2.74 5.41 84.65 0.46 3.20 16 8 N -0.93 -56.64 13.96 21.45 0.30 -56.34 16 9 Si 0.89 44.40 23.26 68.60 1.60 45.99 16 10 H -0.29 -14.01 7.00 99.48 0.70 -13.31 16 11 H -0.32 -16.62 7.11 99.48 0.71 -15.91 16 12 H -0.18 -8.40 4.46 92.32 0.41 -7.99 16 13 C -0.09 -3.19 4.57 30.60 0.14 -3.05 16 14 C -0.11 -3.62 5.70 30.60 0.17 -3.44 16 15 C -0.10 -3.15 5.92 30.59 0.18 -2.97 16 16 C -0.11 -3.95 5.70 30.61 0.17 -3.78 16 17 C -0.10 -4.15 4.10 30.61 0.13 -4.03 16 18 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 19 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 20 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 21 H 0.08 2.69 7.32 -2.39 -0.02 2.67 16 22 H 0.06 2.52 7.56 -2.39 -0.02 2.50 16 23 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 24 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.04 1.67 6.92 -2.39 -0.02 1.66 16 26 H 0.04 1.79 6.69 -2.39 -0.02 1.77 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 2.04 7.22 -2.39 -0.02 2.02 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.03 1.51 2.47 -2.38 -0.01 1.50 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -61.17 252.82 4.23 -56.94 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.76 Total: 10.49 kcal Atomic # 6 Polarization: -42.27 SS G_CDS: 2.53 Total: -39.74 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.30 Total: -56.34 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.60 Total: 45.99 kcal Atomic # 16 Polarization: -16.38 SS G_CDS: -0.95 Total: -17.34 kcal Total: -61.17 4.23 -56.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260069010.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.912 kcal (2) G-P(sol) polarization free energy of solvation -61.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds