Wall clock time and date at job start Mon Mar 30 2020 02:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34643 * 116.99674 * 2 1 4 4 O 1.21510 * 120.00150 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99803 * 179.72042 * 3 2 1 6 6 C 1.47064 * 136.05469 * 359.90110 * 5 3 2 7 7 C 1.53763 * 87.88318 * 152.96318 * 6 5 3 8 8 N 1.46504 * 114.26254 * 139.79180 * 7 6 5 9 9 C 1.46502 * 120.00227 * 326.47585 * 8 7 6 10 10 C 1.36938 * 119.99762 * 146.47908 * 8 7 6 11 11 H 1.07995 * 120.00332 * 23.09449 * 10 8 7 12 12 C 1.38811 * 120.00051 * 203.09168 * 10 8 7 13 13 N 1.31622 * 119.99876 * 11.91311 * 12 10 8 14 14 Si 1.86793 * 120.00233 * 191.91465 * 12 10 8 15 15 H 1.48502 * 109.47277 * 59.99790 * 14 12 10 16 16 H 1.48503 * 109.47501 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47245 * 299.99811 * 14 12 10 18 18 C 1.47062 * 136.05598 * 180.27652 * 5 3 2 19 19 H 1.09000 * 109.47569 * 300.00322 * 1 2 3 20 20 H 1.09003 * 109.47056 * 60.00345 * 1 2 3 21 21 H 1.09001 * 109.47369 * 179.97438 * 1 2 3 22 22 H 1.08992 * 113.47100 * 267.69507 * 6 5 3 23 23 H 1.08994 * 113.46982 * 38.14259 * 6 5 3 24 24 H 1.08996 * 114.39888 * 272.67316 * 7 6 5 25 25 H 1.08998 * 109.46860 * 94.20440 * 9 8 7 26 26 H 1.09004 * 109.47153 * 214.20489 * 9 8 7 27 27 H 1.08997 * 109.47039 * 334.20309 * 9 8 7 28 28 H 0.97001 * 120.00102 * 180.02562 * 13 12 10 29 29 H 1.09003 * 113.47054 * 321.86598 * 18 5 3 30 30 H 1.08999 * 113.46793 * 92.30336 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4091 1.2703 0.0057 6 6 4.5199 0.3066 0.0144 7 6 5.3770 1.3748 -0.6845 8 7 6.7580 1.4495 -0.2012 9 6 7.0574 1.1757 1.2065 10 6 7.7691 1.7752 -1.0654 11 1 7.5513 2.3264 -1.9682 12 6 9.0741 1.3971 -0.7809 13 7 9.3138 0.5337 0.1832 14 14 10.4900 2.1134 -1.7664 15 1 10.5029 3.5904 -1.6125 16 1 11.7725 1.5533 -1.2694 17 1 10.3206 1.7666 -3.2003 18 6 4.4130 2.3449 0.0126 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 4.8697 0.0564 1.0159 23 1 4.3353 -0.5743 -0.6004 24 1 5.3006 1.3729 -1.7717 25 1 7.3356 0.1281 1.3217 26 1 7.8827 1.8088 1.5323 27 1 6.1765 1.3865 1.8129 28 1 10.2257 0.2697 0.3823 29 1 4.1373 3.2006 -0.6037 30 1 4.7346 2.6320 1.0137 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260078874.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:30 Heat of formation + Delta-G solvation = -27.726232 kcal Electronic energy + Delta-G solvation = -14464.574380 eV Core-core repulsion = 11876.081487 eV Total energy + Delta-G solvation = -2588.492893 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.72208 -40.12682 -37.33909 -36.42536 -33.02951 -30.38055 -28.08188 -27.98029 -26.85937 -25.12528 -22.20565 -20.52789 -19.17089 -18.74961 -18.14627 -17.75545 -17.03456 -16.03027 -15.54722 -15.18561 -15.01397 -14.37583 -14.07756 -13.93196 -13.52846 -13.01957 -12.89468 -12.70902 -12.65436 -12.38389 -12.02928 -11.94525 -11.83005 -11.80020 -11.61272 -10.59157 -9.84477 -8.79784 -7.82268 -5.32932 0.97393 1.53472 1.55184 1.61216 1.65653 2.53580 2.89254 3.28325 3.69521 3.79218 4.05802 4.27977 4.32877 4.35634 4.37752 4.55543 4.64988 4.69421 4.75088 4.88266 5.19832 5.23944 5.40085 5.68177 5.75832 6.32628 6.62114 7.11279 7.15216 7.82821 8.26621 9.20356 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.075156 B = 0.006330 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.468560 B = 4422.378107 C = 4529.999913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.375 6.375 3 C 0.673 3.327 4 O -0.611 6.611 5 N -0.630 5.630 6 C 0.090 3.910 7 C 0.154 3.846 8 N -0.591 5.591 9 C 0.172 3.828 10 C -0.272 4.272 11 H 0.077 0.923 12 C -0.044 4.044 13 N -0.934 5.934 14 Si 0.970 3.030 15 H -0.279 1.279 16 H -0.296 1.296 17 H -0.275 1.275 18 C 0.103 3.897 19 H 0.061 0.939 20 H 0.062 0.938 21 H 0.138 0.862 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.014 0.986 26 H 0.020 0.980 27 H 0.033 0.967 28 H 0.250 0.750 29 H 0.077 0.923 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.549 -1.709 -0.064 11.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.288 6.288 3 C 0.429 3.571 4 O -0.504 6.504 5 N -0.371 5.371 6 C -0.035 4.035 7 C 0.044 3.956 8 N -0.311 5.311 9 C 0.027 3.973 10 C -0.402 4.402 11 H 0.095 0.905 12 C -0.240 4.240 13 N -0.580 5.580 14 Si 0.798 3.202 15 H -0.205 1.205 16 H -0.223 1.223 17 H -0.201 1.201 18 C -0.021 4.021 19 H 0.080 0.920 20 H 0.081 0.919 21 H 0.156 0.844 22 H 0.106 0.894 23 H 0.104 0.896 24 H 0.123 0.877 25 H 0.032 0.968 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.864 -1.531 0.001 11.963 hybrid contribution 0.707 0.302 -0.164 0.786 sum -11.157 -1.229 -0.163 11.226 Atomic orbital electron populations 1.23534 0.72573 1.05717 1.02637 1.86280 1.25931 1.29790 1.86839 1.17429 0.81349 0.82273 0.76033 1.90934 1.64321 1.36287 1.58839 1.48013 1.00287 1.14564 1.74223 1.23885 0.82313 0.95189 1.02069 1.22108 0.82609 0.93206 0.97709 1.43982 1.01492 1.79641 1.06027 1.20629 0.95605 0.98345 0.82699 1.19543 0.87327 1.28946 1.04412 0.90495 1.25777 1.00476 0.97938 0.99774 1.70205 1.19500 1.34113 1.34142 0.85313 0.78394 0.78022 0.78485 1.20524 1.22262 1.20063 1.23963 0.83464 0.92639 1.02030 0.91999 0.91936 0.84376 0.89377 0.89597 0.87652 0.96812 0.96081 0.94872 0.94083 0.90436 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.98 10.56 113.37 1.20 2.17 16 2 O -0.37 -11.05 10.59 -55.53 -0.59 -11.63 16 3 C 0.67 23.71 8.96 129.79 1.16 24.87 16 4 O -0.61 -24.46 16.91 19.81 0.33 -24.12 16 5 N -0.63 -21.54 3.69 -988.41 -3.64 -25.18 16 6 C 0.09 2.97 8.06 83.27 0.67 3.64 16 7 C 0.15 5.74 4.73 45.55 0.22 5.95 16 8 N -0.59 -27.17 3.16 -701.58 -2.22 -29.39 16 9 C 0.17 7.77 7.75 127.77 0.99 8.76 16 10 C -0.27 -13.93 9.68 84.03 0.81 -13.12 16 11 H 0.08 3.78 7.86 -2.91 -0.02 3.75 16 12 C -0.04 -2.31 5.12 84.86 0.43 -1.88 16 13 N -0.93 -52.27 10.66 21.65 0.23 -52.04 16 14 Si 0.97 42.86 29.57 68.60 2.03 44.88 16 15 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 16 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 C 0.10 3.51 8.16 83.18 0.68 4.19 16 19 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 20 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 21 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.09 2.92 6.47 -2.39 -0.02 2.90 16 23 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 24 H 0.11 3.85 8.07 -2.39 -0.02 3.83 16 25 H 0.01 0.67 7.40 -2.39 -0.02 0.65 16 26 H 0.02 1.04 7.26 -2.38 -0.02 1.02 16 27 H 0.03 1.26 6.01 -2.39 -0.01 1.25 16 28 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 29 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.09 2.90 7.03 -2.39 -0.02 2.89 16 Total: -1.00 -62.86 258.01 3.43 -59.43 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: 1.13 Total: 3.46 kcal Atomic # 6 Polarization: 28.43 SS G_CDS: 6.16 Total: 34.59 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -5.63 Total: -106.60 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.25 Total: -35.75 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -62.86 3.43 -59.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260078874.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.700 kcal (2) G-P(sol) polarization free energy of solvation -62.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds