Wall clock time and date at job start Mon Mar 30 2020 03:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47326 * 2 1 4 4 O 1.42900 * 109.47366 * 120.00146 * 2 1 3 5 5 C 1.42904 * 113.99961 * 111.37166 * 4 2 1 6 6 C 1.50699 * 109.57598 * 56.46393 * 5 4 2 7 7 H 1.07999 * 120.00257 * 235.29395 * 6 5 4 8 8 C 1.37873 * 119.99777 * 55.28920 * 6 5 4 9 9 N 1.31518 * 119.99961 * 187.07636 * 8 6 5 10 10 Si 1.86803 * 120.00114 * 7.07665 * 8 6 5 11 11 H 1.48501 * 109.46960 * 84.80949 * 10 8 6 12 12 H 1.48500 * 109.46842 * 204.80656 * 10 8 6 13 13 H 1.48495 * 109.47127 * 324.80869 * 10 8 6 14 14 C 1.53186 * 109.51958 * 296.30790 * 5 4 2 15 15 C 1.53171 * 109.03473 * 297.07364 * 14 5 4 16 16 C 1.53087 * 109.21898 * 302.98911 * 15 14 5 17 17 O 1.43036 * 109.34463 * 57.57952 * 16 15 14 18 18 C 1.42909 * 114.13030 * 298.88631 * 17 16 15 19 19 H 1.08997 * 109.47133 * 60.21086 * 1 2 3 20 20 H 1.08995 * 109.46941 * 180.20988 * 1 2 3 21 21 H 1.08996 * 109.47073 * 300.21479 * 1 2 3 22 22 H 1.09004 * 109.47212 * 240.00748 * 2 1 3 23 23 H 1.09003 * 109.47268 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.47260 * 300.00431 * 3 2 1 25 25 H 1.08997 * 109.46691 * 59.99976 * 3 2 1 26 26 H 0.96995 * 120.00196 * 180.02562 * 9 8 6 27 27 H 1.08999 * 109.54090 * 177.20661 * 14 5 4 28 28 H 1.09001 * 109.54454 * 56.94457 * 14 5 4 29 29 H 1.09003 * 109.52281 * 62.92933 * 15 14 5 30 30 H 1.08999 * 109.52043 * 183.05025 * 15 14 5 31 31 H 1.09000 * 109.48835 * 177.62530 * 16 15 14 32 32 H 1.09001 * 109.48453 * 297.66215 * 16 15 14 33 33 H 1.09007 * 109.47725 * 301.17029 * 18 17 16 34 34 H 1.09007 * 109.48882 * 181.15074 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.6486 -1.9212 0.8961 6 6 3.7854 -1.7049 -0.0693 7 1 3.8254 -2.2663 -0.9911 8 6 4.7743 -0.7901 0.2241 9 7 5.6886 -0.4989 -0.6753 10 14 4.8156 0.0357 1.8992 11 1 5.5297 -0.8382 2.8644 12 1 5.5233 1.3369 1.7922 13 1 3.4269 0.2649 2.3724 14 6 1.6369 -2.8959 0.2854 15 6 0.5272 -3.1682 1.3055 16 6 1.1497 -3.7109 2.5945 17 8 2.1043 -2.7694 3.0926 18 6 3.1906 -2.5112 2.2005 19 1 -0.3633 0.5105 -0.8918 20 1 -0.3633 -1.0276 0.0038 21 1 -0.3633 0.5171 0.8880 22 1 1.8933 -0.5137 -0.8901 23 1 3.1301 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 6.3846 0.1443 -0.4688 27 1 2.1377 -3.8306 0.0330 28 1 1.2055 -2.4574 -0.6145 29 1 -0.0056 -2.2418 1.5202 30 1 -0.1684 -3.9027 0.8995 31 1 0.3682 -3.8666 3.3382 32 1 1.6480 -4.6579 2.3869 33 1 3.7155 -3.4426 1.9879 34 1 3.8792 -1.8030 2.6614 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260088466.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:10 Heat of formation + Delta-G solvation = -92.736604 kcal Electronic energy + Delta-G solvation = -16179.868055 eV Core-core repulsion = 13692.096444 eV Total energy + Delta-G solvation = -2487.771611 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.16291 -36.56167 -33.03681 -32.24929 -31.57800 -29.36990 -26.56552 -25.19283 -24.36147 -21.80486 -20.56152 -18.80302 -16.86719 -16.02879 -15.75898 -14.73443 -14.50919 -14.39520 -13.53702 -13.38521 -12.76586 -12.58340 -12.38069 -12.20987 -11.86882 -11.61056 -11.31948 -11.11744 -10.75618 -10.66698 -10.36773 -10.15864 -9.88520 -9.79432 -9.68484 -9.04599 -8.75883 -8.32495 -7.94091 -6.20694 -4.29895 3.31587 3.44530 3.69530 4.41234 4.56417 4.92985 5.17249 5.46732 5.54778 5.64742 5.78414 5.90786 5.93621 6.07039 6.09888 6.22175 6.26792 6.28834 6.38905 6.44290 6.44812 6.55977 6.61130 6.74340 6.94373 7.00232 7.08867 7.21080 7.51595 7.93052 8.17824 8.70339 8.84352 9.44259 10.89520 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.026784 B = 0.017745 C = 0.013762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.165980 B = 1577.532011 C = 2034.099916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.089 3.911 3 C -0.151 4.151 4 O -0.373 6.373 5 C 0.178 3.822 6 C -0.551 4.551 7 H 0.076 0.924 8 C 0.093 3.907 9 N -0.885 5.885 10 Si 0.855 3.145 11 H -0.286 1.286 12 H -0.300 1.300 13 H -0.212 1.212 14 C -0.129 4.129 15 C -0.156 4.156 16 C 0.066 3.934 17 O -0.389 6.389 18 C 0.072 3.928 19 H 0.050 0.950 20 H 0.054 0.946 21 H 0.050 0.950 22 H 0.078 0.922 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.266 0.734 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.679 -2.052 2.895 9.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 C -0.208 4.208 4 O -0.293 6.293 5 C 0.140 3.860 6 C -0.588 4.588 7 H 0.094 0.906 8 C -0.112 4.112 9 N -0.521 5.521 10 Si 0.684 3.316 11 H -0.214 1.214 12 H -0.227 1.227 13 H -0.134 1.134 14 C -0.167 4.167 15 C -0.193 4.193 16 C -0.012 4.012 17 O -0.308 6.308 18 C -0.004 4.004 19 H 0.069 0.931 20 H 0.073 0.927 21 H 0.069 0.931 22 H 0.096 0.904 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.577 -1.789 3.206 9.329 hybrid contribution 0.381 0.223 0.158 0.469 sum -8.196 -1.566 3.364 8.997 Atomic orbital electron populations 1.22306 0.97805 1.01398 1.00691 1.21607 0.90968 0.92709 0.91676 1.21980 1.02142 0.96620 1.00086 1.88031 1.76044 1.34676 1.30535 1.20014 0.90895 0.82377 0.92759 1.21234 1.06802 1.24701 1.06093 0.90573 1.24922 0.94423 0.95067 0.96818 1.69936 1.15105 1.32999 1.34010 0.87500 0.81161 0.78247 0.84721 1.21405 1.22742 1.13422 1.22062 0.96530 1.00207 0.97857 1.22213 0.98819 1.01532 0.96763 1.22432 0.91772 0.91343 0.95612 1.87879 1.36182 1.62986 1.43730 1.23100 0.87985 0.99156 0.90114 0.93104 0.92709 0.93109 0.90420 0.92056 0.93079 0.93506 0.92428 0.92208 0.91960 0.90675 0.92557 0.90188 0.94176 0.92375 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.18 37.16 0.34 -2.45 16 2 C 0.09 1.84 2.23 -26.73 -0.06 1.78 16 3 C -0.15 -3.02 9.23 37.16 0.34 -2.68 16 4 O -0.37 -8.66 5.90 -42.72 -0.25 -8.91 16 5 C 0.18 4.12 0.27 -91.63 -0.02 4.10 16 6 C -0.55 -14.74 7.11 -34.44 -0.24 -14.99 16 7 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 8 C 0.09 2.59 5.13 -17.82 -0.09 2.50 16 9 N -0.88 -26.07 13.96 55.43 0.77 -25.30 16 10 Si 0.86 21.70 21.91 -169.99 -3.73 17.97 16 11 H -0.29 -7.19 6.88 56.52 0.39 -6.80 16 12 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 13 H -0.21 -5.33 5.41 56.52 0.31 -5.02 16 14 C -0.13 -2.55 4.28 -26.55 -0.11 -2.66 16 15 C -0.16 -2.64 5.62 -26.60 -0.15 -2.79 16 16 C 0.07 1.11 6.86 37.20 0.26 1.37 16 17 O -0.39 -8.25 10.70 -42.72 -0.46 -8.71 16 18 C 0.07 1.65 5.33 37.20 0.20 1.84 16 19 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 20 H 0.05 0.90 5.56 -51.93 -0.29 0.61 16 21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.08 1.76 5.93 -51.93 -0.31 1.45 16 23 H 0.06 1.39 6.03 -51.93 -0.31 1.07 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.22 6.30 -51.93 -0.33 0.89 16 29 H 0.07 1.33 6.27 -51.93 -0.33 1.01 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 34 H 0.08 2.00 3.46 -51.93 -0.18 1.82 16 LS Contribution 250.22 15.07 3.77 3.77 Total: -1.00 -29.29 250.22 -4.65 -33.94 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.21 Total: 1.21 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 0.45 Total: -13.97 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.77 Total: -25.30 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.71 Total: -17.62 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -3.73 Total: 17.97 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.29 -4.65 -33.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088466.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.798 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds