Wall clock time and date at job start Mon Mar 30 2020 03:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47326 * 2 1 4 4 O 1.42900 * 109.47366 * 120.00146 * 2 1 3 5 5 C 1.42904 * 113.99961 * 111.37166 * 4 2 1 6 6 C 1.50699 * 109.57598 * 56.46393 * 5 4 2 7 7 H 1.07999 * 120.00257 * 235.29395 * 6 5 4 8 8 C 1.37873 * 119.99777 * 55.28920 * 6 5 4 9 9 N 1.31518 * 119.99961 * 187.07636 * 8 6 5 10 10 Si 1.86803 * 120.00114 * 7.07665 * 8 6 5 11 11 H 1.48501 * 109.46960 * 84.80949 * 10 8 6 12 12 H 1.48500 * 109.46842 * 204.80656 * 10 8 6 13 13 H 1.48495 * 109.47127 * 324.80869 * 10 8 6 14 14 C 1.53186 * 109.51958 * 296.30790 * 5 4 2 15 15 C 1.53171 * 109.03473 * 297.07364 * 14 5 4 16 16 C 1.53087 * 109.21898 * 302.98911 * 15 14 5 17 17 O 1.43036 * 109.34463 * 57.57952 * 16 15 14 18 18 C 1.42909 * 114.13030 * 298.88631 * 17 16 15 19 19 H 1.08997 * 109.47133 * 60.21086 * 1 2 3 20 20 H 1.08995 * 109.46941 * 180.20988 * 1 2 3 21 21 H 1.08996 * 109.47073 * 300.21479 * 1 2 3 22 22 H 1.09004 * 109.47212 * 240.00748 * 2 1 3 23 23 H 1.09003 * 109.47268 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.47260 * 300.00431 * 3 2 1 25 25 H 1.08997 * 109.46691 * 59.99976 * 3 2 1 26 26 H 0.96995 * 120.00196 * 180.02562 * 9 8 6 27 27 H 1.08999 * 109.54090 * 177.20661 * 14 5 4 28 28 H 1.09001 * 109.54454 * 56.94457 * 14 5 4 29 29 H 1.09003 * 109.52281 * 62.92933 * 15 14 5 30 30 H 1.08999 * 109.52043 * 183.05025 * 15 14 5 31 31 H 1.09000 * 109.48835 * 177.62530 * 16 15 14 32 32 H 1.09001 * 109.48453 * 297.66215 * 16 15 14 33 33 H 1.09007 * 109.47725 * 301.17029 * 18 17 16 34 34 H 1.09007 * 109.48882 * 181.15074 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.6486 -1.9212 0.8961 6 6 3.7854 -1.7049 -0.0693 7 1 3.8254 -2.2663 -0.9911 8 6 4.7743 -0.7901 0.2241 9 7 5.6886 -0.4989 -0.6753 10 14 4.8156 0.0357 1.8992 11 1 5.5297 -0.8382 2.8644 12 1 5.5233 1.3369 1.7922 13 1 3.4269 0.2649 2.3724 14 6 1.6369 -2.8959 0.2854 15 6 0.5272 -3.1682 1.3055 16 6 1.1497 -3.7109 2.5945 17 8 2.1043 -2.7694 3.0926 18 6 3.1906 -2.5112 2.2005 19 1 -0.3633 0.5105 -0.8918 20 1 -0.3633 -1.0276 0.0038 21 1 -0.3633 0.5171 0.8880 22 1 1.8933 -0.5137 -0.8901 23 1 3.1301 1.4425 -0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 6.3846 0.1443 -0.4688 27 1 2.1377 -3.8306 0.0330 28 1 1.2055 -2.4574 -0.6145 29 1 -0.0056 -2.2418 1.5202 30 1 -0.1684 -3.9027 0.8995 31 1 0.3682 -3.8666 3.3382 32 1 1.6480 -4.6579 2.3869 33 1 3.7155 -3.4426 1.9879 34 1 3.8792 -1.8030 2.6614 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260088466.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:09 Heat of formation + Delta-G solvation = -113.046165 kcal Electronic energy + Delta-G solvation = -16180.748744 eV Core-core repulsion = 13692.096444 eV Total energy + Delta-G solvation = -2488.652299 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.82721 -38.19884 -34.94964 -33.93625 -33.23936 -31.10195 -28.06703 -27.05528 -26.00423 -23.44252 -22.18021 -20.46484 -18.88747 -17.70184 -17.47980 -16.37313 -16.19740 -16.05266 -15.30482 -15.06118 -14.61746 -14.26801 -14.01559 -13.76930 -13.45452 -13.03012 -13.01369 -12.66904 -12.51644 -12.43396 -12.20923 -11.79470 -11.63111 -11.38964 -11.36050 -10.85451 -10.75804 -10.09702 -9.72011 -8.39151 -6.48534 1.27496 1.37047 1.64019 2.33905 2.87892 3.07743 3.32550 4.06393 4.14185 4.17057 4.27301 4.40691 4.43859 4.50514 4.61564 4.66928 4.71129 4.83011 4.85648 4.99283 5.00017 5.08391 5.11730 5.19233 5.34156 5.44309 5.49213 5.56935 5.63989 6.04636 6.34755 6.62120 6.94022 7.29479 8.74932 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.026784 B = 0.017745 C = 0.013762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.165980 B = 1577.532011 C = 2034.099916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.082 3.918 3 C -0.151 4.151 4 O -0.384 6.384 5 C 0.176 3.824 6 C -0.543 4.543 7 H 0.043 0.957 8 C 0.055 3.945 9 N -0.928 5.928 10 Si 0.904 3.096 11 H -0.284 1.284 12 H -0.306 1.306 13 H -0.207 1.207 14 C -0.127 4.127 15 C -0.147 4.147 16 C 0.055 3.945 17 O -0.402 6.402 18 C 0.074 3.926 19 H 0.074 0.926 20 H 0.061 0.939 21 H 0.057 0.943 22 H 0.051 0.949 23 H 0.027 0.973 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.266 0.734 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.068 -2.496 3.915 12.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.024 3.976 3 C -0.208 4.208 4 O -0.305 6.305 5 C 0.137 3.863 6 C -0.580 4.580 7 H 0.061 0.939 8 C -0.146 4.146 9 N -0.566 5.566 10 Si 0.733 3.267 11 H -0.211 1.211 12 H -0.235 1.235 13 H -0.129 1.129 14 C -0.165 4.165 15 C -0.184 4.184 16 C -0.021 4.021 17 O -0.321 6.321 18 C -0.002 4.002 19 H 0.092 0.908 20 H 0.080 0.920 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.046 0.954 24 H 0.096 0.904 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.988 -2.247 4.232 11.987 hybrid contribution 1.064 0.312 -0.231 1.133 sum -9.924 -1.934 4.001 10.873 Atomic orbital electron populations 1.22184 0.94280 1.02385 1.02226 1.21792 0.93693 0.92380 0.89743 1.21995 0.99972 0.96812 1.02036 1.87972 1.76115 1.34807 1.31597 1.19974 0.90559 0.83390 0.92342 1.21454 1.07783 1.23264 1.05497 0.93920 1.25457 0.94311 0.95818 0.99019 1.70037 1.16363 1.34510 1.35726 0.86736 0.81088 0.77062 0.81858 1.21136 1.23481 1.12937 1.21990 0.96800 0.99096 0.98586 1.22168 0.98031 1.02407 0.95822 1.22806 0.91783 0.90936 0.96595 1.87853 1.36356 1.64312 1.43563 1.22878 0.88534 0.98891 0.89933 0.90755 0.92043 0.92355 0.93099 0.95403 0.90420 0.92288 0.92502 0.92275 0.92197 0.91175 0.88963 0.86864 0.92744 0.91968 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.18 71.98 0.66 -4.07 16 2 C 0.08 3.29 2.23 30.59 0.07 3.36 16 3 C -0.15 -5.86 9.23 71.98 0.66 -5.19 16 4 O -0.38 -17.37 5.90 -141.82 -0.84 -18.20 16 5 C 0.18 8.03 0.27 -11.45 0.00 8.02 16 6 C -0.54 -29.59 7.11 25.60 0.18 -29.41 16 7 H 0.04 2.56 7.99 -2.91 -0.02 2.54 16 8 C 0.06 3.13 5.13 84.65 0.43 3.56 16 9 N -0.93 -56.44 13.96 21.45 0.30 -56.14 16 10 Si 0.90 45.69 21.91 68.60 1.50 47.20 16 11 H -0.28 -14.03 6.88 99.48 0.68 -13.35 16 12 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 13 H -0.21 -10.21 5.41 99.48 0.54 -9.67 16 14 C -0.13 -4.80 4.28 30.71 0.13 -4.67 16 15 C -0.15 -4.42 5.62 30.68 0.17 -4.24 16 16 C 0.05 1.65 6.86 72.01 0.49 2.14 16 17 O -0.40 -16.02 10.70 -141.82 -1.52 -17.54 16 18 C 0.07 3.29 5.33 72.01 0.38 3.67 16 19 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 20 H 0.06 1.80 5.56 -2.39 -0.01 1.79 16 21 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.05 2.31 5.93 -2.39 -0.01 2.29 16 23 H 0.03 1.24 6.03 -2.39 -0.01 1.23 16 24 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 27 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.06 2.26 6.30 -2.39 -0.02 2.25 16 29 H 0.07 2.21 6.27 -2.39 -0.01 2.20 16 30 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 34 H 0.06 3.02 3.46 -2.38 -0.01 3.01 16 Total: -1.00 -63.67 250.22 3.52 -60.15 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.88 Total: 11.36 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 3.19 Total: -26.82 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.30 Total: -56.14 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -2.35 Total: -35.74 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.50 Total: 47.20 kcal Total: -63.67 3.52 -60.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088466.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.896 kcal (2) G-P(sol) polarization free energy of solvation -63.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds