Wall clock time and date at job start Mon Mar 30 2020 03:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47224 * 2 1 4 4 O 1.42895 * 109.47358 * 240.00493 * 2 1 3 5 5 C 1.42907 * 113.99794 * 239.59273 * 4 2 1 6 6 C 1.50701 * 109.52338 * 303.28430 * 5 4 2 7 7 H 1.07999 * 120.00000 * 119.97011 * 6 5 4 8 8 C 1.37874 * 119.99949 * 299.97606 * 6 5 4 9 9 N 1.31521 * 119.99955 * 6.14911 * 8 6 5 10 10 Si 1.86798 * 120.00156 * 186.15827 * 8 6 5 11 11 H 1.48502 * 109.47112 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47511 * 119.99725 * 10 8 6 13 13 H 1.48507 * 109.46846 * 239.99671 * 10 8 6 14 14 C 1.53175 * 109.52284 * 63.41100 * 5 4 2 15 15 C 1.53316 * 108.96695 * 62.98290 * 14 5 4 16 16 C 1.53088 * 109.19174 * 56.94688 * 15 14 5 17 17 O 1.42904 * 109.41322 * 302.38458 * 16 15 14 18 18 C 1.42907 * 114.09398 * 61.16713 * 17 16 15 19 19 H 1.08999 * 109.47154 * 296.82291 * 1 2 3 20 20 H 1.08991 * 109.47205 * 176.82340 * 1 2 3 21 21 H 1.09004 * 109.46954 * 56.81835 * 1 2 3 22 22 H 1.09001 * 109.47106 * 119.99904 * 2 1 3 23 23 H 1.09006 * 109.46864 * 60.00301 * 3 2 1 24 24 H 1.09000 * 109.46998 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47351 * 300.00324 * 3 2 1 26 26 H 0.96998 * 119.99550 * 180.02562 * 9 8 6 27 27 H 1.08999 * 109.54561 * 182.79638 * 14 5 4 28 28 H 1.09004 * 109.54465 * 303.05653 * 14 5 4 29 29 H 1.08994 * 109.50265 * 297.02581 * 15 14 5 30 30 H 1.09004 * 109.55578 * 176.89078 * 15 14 5 31 31 H 1.09005 * 109.47736 * 182.41361 * 16 15 14 32 32 H 1.08998 * 109.48855 * 62.37282 * 16 15 14 33 33 H 1.09008 * 109.47874 * 178.85510 * 18 17 16 34 34 H 1.08994 * 109.48519 * 58.82138 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.8231 -1.8125 -0.8877 6 6 3.9902 -1.3971 -0.0296 7 1 4.1271 -1.8388 0.9464 8 6 4.8833 -0.4532 -0.4905 9 7 4.6521 0.1726 -1.6240 10 14 6.4218 -0.0634 0.4946 11 1 6.4478 -0.8978 1.7228 12 1 7.6233 -0.3549 -0.3278 13 1 6.4170 1.3728 0.8723 14 6 1.9945 -2.8678 -0.1488 15 6 0.8567 -3.3377 -1.0627 16 6 1.4490 -3.8724 -2.3692 17 8 2.2328 -2.8507 -2.9886 18 6 3.3393 -2.4061 -2.2010 19 1 -0.3633 0.4637 0.9171 20 1 -0.3633 -1.0260 -0.0569 21 1 -0.3633 0.5625 -0.8601 22 1 1.8933 -0.5138 0.8900 23 1 1.6767 1.9564 0.8901 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 5.2806 0.8364 -1.9484 27 1 2.6294 -3.7157 0.1081 28 1 1.5783 -2.4338 0.7604 29 1 0.1941 -2.4998 -1.2790 30 1 0.2938 -4.1288 -0.5673 31 1 0.6421 -4.1682 -3.0398 32 1 2.0796 -4.7355 -2.1562 33 1 3.8942 -1.6455 -2.7504 34 1 3.9946 -3.2499 -1.9857 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260088469.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:11 Heat of formation + Delta-G solvation = -103.235617 kcal Electronic energy + Delta-G solvation = -16058.058364 eV Core-core repulsion = 13569.831482 eV Total energy + Delta-G solvation = -2488.226882 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.73411 -36.18924 -32.96519 -32.08714 -31.09707 -28.78652 -26.23057 -25.13212 -23.99586 -21.72188 -20.21808 -18.67140 -16.67289 -15.67701 -15.08593 -14.57586 -14.25016 -14.11092 -13.64487 -13.12089 -12.48538 -12.26855 -12.05596 -11.73222 -11.50700 -11.36691 -11.10073 -10.87132 -10.79142 -10.57791 -10.38132 -10.10010 -9.99198 -9.58655 -9.49346 -8.98944 -8.57104 -8.11616 -7.76043 -6.03411 -4.22043 3.22412 3.32457 3.35297 4.33255 4.87642 5.17298 5.38122 5.64931 5.74101 5.83690 5.99009 6.11653 6.15123 6.25798 6.34510 6.46211 6.48731 6.59713 6.67588 6.68050 6.73986 6.81734 6.90231 7.06497 7.21544 7.33135 7.51256 7.65199 7.84925 8.08754 8.36545 8.78106 9.16629 9.51478 10.95901 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.027878 B = 0.014957 C = 0.011615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.136630 B = 1871.550912 C = 2410.080410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 C -0.147 4.147 4 O -0.351 6.351 5 C 0.214 3.786 6 C -0.558 4.558 7 H 0.057 0.943 8 C 0.085 3.915 9 N -0.848 5.848 10 Si 0.880 3.120 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.283 1.283 14 C -0.140 4.140 15 C -0.152 4.152 16 C 0.065 3.935 17 O -0.390 6.390 18 C 0.081 3.919 19 H 0.046 0.954 20 H 0.049 0.951 21 H 0.050 0.950 22 H 0.058 0.942 23 H 0.032 0.968 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.261 0.739 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.120 0.880 34 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.786 -3.109 1.975 6.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 C -0.204 4.204 4 O -0.270 6.270 5 C 0.175 3.825 6 C -0.596 4.596 7 H 0.075 0.925 8 C -0.122 4.122 9 N -0.483 5.483 10 Si 0.707 3.293 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.209 1.209 14 C -0.178 4.178 15 C -0.190 4.190 16 C -0.012 4.012 17 O -0.309 6.309 18 C 0.006 3.994 19 H 0.065 0.935 20 H 0.068 0.932 21 H 0.069 0.931 22 H 0.076 0.924 23 H 0.051 0.949 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.138 0.862 34 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.797 -2.836 1.463 5.762 hybrid contribution 1.002 0.078 1.226 1.585 sum -3.795 -2.758 2.689 5.407 Atomic orbital electron populations 1.22235 0.98293 1.01002 1.00352 1.21399 0.90245 0.92963 0.91284 1.21967 1.03405 0.96410 0.98643 1.87950 1.67643 1.42886 1.28521 1.19583 0.87866 0.82850 0.92185 1.21445 1.10216 1.24765 1.03144 0.92522 1.24976 0.97225 0.95069 0.94887 1.70065 1.34748 1.23751 1.19735 0.86743 0.83726 0.78268 0.80525 1.19762 1.20784 1.20882 1.22273 0.97001 1.00141 0.98417 1.22186 0.99180 1.00596 0.97018 1.22343 0.94332 0.90374 0.94163 1.87893 1.43146 1.55577 1.44314 1.22801 0.86383 0.97056 0.93196 0.93500 0.93194 0.93118 0.92390 0.94934 0.90795 0.93847 0.92905 0.92805 0.92740 0.90961 0.93167 0.90760 0.94773 0.86186 0.94614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.56 37.15 0.36 -2.61 16 2 C 0.10 2.20 2.24 -26.73 -0.06 2.14 16 3 C -0.15 -3.18 9.56 37.16 0.36 -2.82 16 4 O -0.35 -8.81 8.30 -42.72 -0.35 -9.16 16 5 C 0.21 5.19 0.30 -91.63 -0.03 5.16 16 6 C -0.56 -14.45 6.68 -34.44 -0.23 -14.68 16 7 H 0.06 1.48 7.75 -52.49 -0.41 1.07 16 8 C 0.08 2.20 4.19 -17.82 -0.07 2.13 16 9 N -0.85 -22.82 10.49 55.43 0.58 -22.24 16 10 Si 0.88 20.26 29.54 -169.99 -5.02 15.24 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 C -0.14 -2.95 4.61 -26.48 -0.12 -3.07 16 15 C -0.15 -2.82 5.96 -26.52 -0.16 -2.98 16 16 C 0.07 1.22 6.84 37.20 0.25 1.47 16 17 O -0.39 -9.01 10.70 -42.72 -0.46 -9.46 16 18 C 0.08 1.99 5.55 37.21 0.21 2.20 16 19 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 20 H 0.05 0.89 6.60 -51.93 -0.34 0.55 16 21 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.06 1.33 5.75 -51.93 -0.30 1.03 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.80 6.47 -51.93 -0.34 1.46 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.26 6.75 8.31 -40.82 -0.34 6.42 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 1.13 6.66 -51.93 -0.35 0.78 16 29 H 0.07 1.42 6.31 -51.93 -0.33 1.09 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.12 3.24 6.40 -51.92 -0.33 2.91 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 263.37 15.07 3.97 3.97 Total: -1.00 -27.48 263.37 -6.11 -33.59 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.33 Total: 1.14 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 0.50 Total: -13.06 kcal Atomic # 7 Polarization: -22.82 SS G_CDS: 0.58 Total: -22.24 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.81 Total: -18.63 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.48 -6.11 -33.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088469.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.643 kcal (2) G-P(sol) polarization free energy of solvation -27.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds