Wall clock time and date at job start Mon Mar 30 2020 03:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47224 * 2 1 4 4 O 1.42895 * 109.47358 * 240.00493 * 2 1 3 5 5 C 1.42907 * 113.99794 * 239.59273 * 4 2 1 6 6 C 1.50701 * 109.52338 * 303.28430 * 5 4 2 7 7 H 1.07999 * 120.00000 * 119.97011 * 6 5 4 8 8 C 1.37874 * 119.99949 * 299.97606 * 6 5 4 9 9 N 1.31521 * 119.99955 * 6.14911 * 8 6 5 10 10 Si 1.86798 * 120.00156 * 186.15827 * 8 6 5 11 11 H 1.48502 * 109.47112 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47511 * 119.99725 * 10 8 6 13 13 H 1.48507 * 109.46846 * 239.99671 * 10 8 6 14 14 C 1.53175 * 109.52284 * 63.41100 * 5 4 2 15 15 C 1.53316 * 108.96695 * 62.98290 * 14 5 4 16 16 C 1.53088 * 109.19174 * 56.94688 * 15 14 5 17 17 O 1.42904 * 109.41322 * 302.38458 * 16 15 14 18 18 C 1.42907 * 114.09398 * 61.16713 * 17 16 15 19 19 H 1.08999 * 109.47154 * 296.82291 * 1 2 3 20 20 H 1.08991 * 109.47205 * 176.82340 * 1 2 3 21 21 H 1.09004 * 109.46954 * 56.81835 * 1 2 3 22 22 H 1.09001 * 109.47106 * 119.99904 * 2 1 3 23 23 H 1.09006 * 109.46864 * 60.00301 * 3 2 1 24 24 H 1.09000 * 109.46998 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.47351 * 300.00324 * 3 2 1 26 26 H 0.96998 * 119.99550 * 180.02562 * 9 8 6 27 27 H 1.08999 * 109.54561 * 182.79638 * 14 5 4 28 28 H 1.09004 * 109.54465 * 303.05653 * 14 5 4 29 29 H 1.08994 * 109.50265 * 297.02581 * 15 14 5 30 30 H 1.09004 * 109.55578 * 176.89078 * 15 14 5 31 31 H 1.09005 * 109.47736 * 182.41361 * 16 15 14 32 32 H 1.08998 * 109.48855 * 62.37282 * 16 15 14 33 33 H 1.09008 * 109.47874 * 178.85510 * 18 17 16 34 34 H 1.08994 * 109.48519 * 58.82138 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.8231 -1.8125 -0.8877 6 6 3.9902 -1.3971 -0.0296 7 1 4.1271 -1.8388 0.9464 8 6 4.8833 -0.4532 -0.4905 9 7 4.6521 0.1726 -1.6240 10 14 6.4218 -0.0634 0.4946 11 1 6.4478 -0.8978 1.7228 12 1 7.6233 -0.3549 -0.3278 13 1 6.4170 1.3728 0.8723 14 6 1.9945 -2.8678 -0.1488 15 6 0.8567 -3.3377 -1.0627 16 6 1.4490 -3.8724 -2.3692 17 8 2.2328 -2.8507 -2.9886 18 6 3.3393 -2.4061 -2.2010 19 1 -0.3633 0.4637 0.9171 20 1 -0.3633 -1.0260 -0.0569 21 1 -0.3633 0.5625 -0.8601 22 1 1.8933 -0.5138 0.8900 23 1 1.6767 1.9564 0.8901 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 5.2806 0.8364 -1.9484 27 1 2.6294 -3.7157 0.1081 28 1 1.5783 -2.4338 0.7604 29 1 0.1941 -2.4998 -1.2790 30 1 0.2938 -4.1288 -0.5673 31 1 0.6421 -4.1682 -3.0398 32 1 2.0796 -4.7355 -2.1562 33 1 3.8942 -1.6455 -2.7504 34 1 3.9946 -3.2499 -1.9857 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260088469.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:11 Heat of formation + Delta-G solvation = -119.841689 kcal Electronic energy + Delta-G solvation = -16058.778458 eV Core-core repulsion = 13569.831482 eV Total energy + Delta-G solvation = -2488.946975 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.47507 -37.93500 -34.84424 -33.79582 -32.81996 -30.57115 -27.84923 -27.02780 -25.71822 -23.40788 -21.92832 -20.39401 -18.59214 -17.37103 -16.95158 -16.32665 -15.94600 -15.86631 -15.37599 -14.79459 -14.13911 -13.94594 -13.85558 -13.39442 -13.18622 -12.95628 -12.88932 -12.59583 -12.49380 -12.39946 -12.18956 -11.79161 -11.66944 -11.28464 -11.22408 -10.76074 -10.52987 -9.89895 -9.57755 -8.01224 -6.25493 1.37668 1.43198 1.50919 2.41549 3.07707 3.37075 3.60916 4.15264 4.23740 4.29563 4.41890 4.55970 4.61699 4.69367 4.71806 4.82611 4.88979 4.93911 5.04904 5.09301 5.13940 5.18444 5.22832 5.36243 5.53614 5.57576 5.68775 5.77498 5.92863 6.19636 6.57411 6.83013 7.31158 7.54667 8.96706 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.027878 B = 0.014957 C = 0.011615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.136630 B = 1871.550912 C = 2410.080410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.094 3.906 3 C -0.142 4.142 4 O -0.375 6.375 5 C 0.207 3.793 6 C -0.568 4.568 7 H 0.049 0.951 8 C 0.050 3.950 9 N -0.871 5.871 10 Si 0.932 3.068 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.283 1.283 14 C -0.137 4.137 15 C -0.144 4.144 16 C 0.056 3.944 17 O -0.410 6.410 18 C 0.088 3.912 19 H 0.074 0.926 20 H 0.055 0.945 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.259 0.741 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.957 -3.857 2.844 7.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.035 3.965 3 C -0.199 4.199 4 O -0.294 6.294 5 C 0.168 3.832 6 C -0.606 4.606 7 H 0.067 0.933 8 C -0.154 4.154 9 N -0.507 5.507 10 Si 0.758 3.242 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.209 1.209 14 C -0.175 4.175 15 C -0.182 4.182 16 C -0.021 4.021 17 O -0.330 6.330 18 C 0.012 3.988 19 H 0.093 0.907 20 H 0.074 0.926 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.123 0.877 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.976 -3.594 2.341 7.355 hybrid contribution 1.335 0.295 0.954 1.667 sum -4.641 -3.299 3.295 6.579 Atomic orbital electron populations 1.22118 0.95203 1.01751 1.01741 1.21585 0.92607 0.92417 0.89853 1.21910 1.01304 0.96876 0.99837 1.87897 1.67827 1.43539 1.30182 1.19614 0.87977 0.83626 0.91963 1.21656 1.11187 1.24726 1.03018 0.93316 1.25501 0.99310 0.95024 0.95549 1.70181 1.35425 1.24138 1.20913 0.85930 0.80965 0.77841 0.79414 1.19472 1.20640 1.20931 1.22174 0.97545 0.99172 0.98571 1.22134 0.98175 1.01309 0.96575 1.22685 0.94873 0.89599 0.94903 1.87840 1.43111 1.57077 1.44963 1.22520 0.86893 0.96308 0.93086 0.90727 0.92615 0.93240 0.93637 0.91877 0.93972 0.94400 0.93187 0.92576 0.92688 0.92017 0.89492 0.87722 0.93311 0.89578 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 9.56 71.98 0.69 -4.50 16 2 C 0.09 4.05 2.24 30.59 0.07 4.12 16 3 C -0.14 -6.06 9.56 71.98 0.69 -5.37 16 4 O -0.37 -18.80 8.30 -141.82 -1.18 -19.97 16 5 C 0.21 10.01 0.30 -11.45 0.00 10.01 16 6 C -0.57 -29.61 6.68 25.60 0.17 -29.44 16 7 H 0.05 2.55 7.75 -2.91 -0.02 2.53 16 8 C 0.05 2.64 4.19 84.65 0.35 3.00 16 9 N -0.87 -47.95 10.49 21.45 0.23 -47.73 16 10 Si 0.93 41.93 29.54 68.60 2.03 43.96 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 C -0.14 -5.53 4.61 30.76 0.14 -5.39 16 15 C -0.14 -4.94 5.96 30.73 0.18 -4.76 16 16 C 0.06 1.94 6.84 72.01 0.49 2.43 16 17 O -0.41 -18.66 10.70 -141.82 -1.52 -20.17 16 18 C 0.09 4.35 5.55 72.01 0.40 4.75 16 19 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 20 H 0.05 1.84 6.60 -2.39 -0.02 1.82 16 21 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 22 H 0.05 2.06 5.75 -2.39 -0.01 2.04 16 23 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 24 H 0.04 2.05 6.47 -2.39 -0.02 2.03 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 2.18 6.66 -2.38 -0.02 2.17 16 29 H 0.06 2.26 6.31 -2.39 -0.02 2.24 16 30 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 4.81 6.40 -2.38 -0.02 4.79 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -58.85 263.37 3.81 -55.04 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 1.06 Total: 14.01 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 3.19 Total: -25.14 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.23 Total: -47.73 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -2.69 Total: -40.15 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -58.85 3.81 -55.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088469.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.797 kcal (2) G-P(sol) polarization free energy of solvation -58.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds