Wall clock time and date at job start Mon Mar 30 2020 02:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34785 * 120.00192 * 2 1 4 4 O 1.21582 * 119.99473 * 0.02562 * 3 2 1 5 5 N 1.34771 * 120.00055 * 180.02562 * 3 2 1 6 6 C 1.47809 * 134.58376 * 359.95283 * 5 3 2 7 7 C 1.53945 * 86.16372 * 204.57517 * 6 5 3 8 8 C 1.47583 * 134.49250 * 179.97438 * 5 3 2 9 9 H 1.08993 * 113.76807 * 269.78520 * 8 5 3 10 10 C 1.53000 * 113.76545 * 41.07478 * 8 5 3 11 11 O 1.42903 * 109.46726 * 273.65041 * 10 8 5 12 12 C 1.34928 * 116.99484 * 180.02562 * 11 10 8 13 13 H 1.07994 * 120.00342 * 0.02562 * 12 11 10 14 14 C 1.38636 * 119.99689 * 180.02562 * 12 11 10 15 15 N 1.31586 * 120.00188 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00177 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46850 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47566 * 119.99872 * 16 14 12 19 19 H 1.48500 * 109.47143 * 240.00117 * 16 14 12 20 20 H 1.09002 * 109.46902 * 299.99580 * 1 2 3 21 21 H 1.08997 * 109.47118 * 59.99293 * 1 2 3 22 22 H 1.08995 * 109.46955 * 180.02562 * 1 2 3 23 23 H 0.97005 * 120.00335 * 180.02562 * 2 1 3 24 24 H 1.09003 * 113.66707 * 90.26990 * 6 5 3 25 25 H 1.08997 * 113.93884 * 318.92272 * 6 5 3 26 26 H 1.08998 * 113.74489 * 222.14352 * 7 6 5 27 27 H 1.08997 * 113.83939 * 90.84066 * 7 6 5 28 28 H 1.09002 * 109.47398 * 33.65285 * 10 8 5 29 29 H 1.09001 * 109.47194 * 153.65466 * 10 8 5 30 30 H 0.96996 * 120.00124 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.5242 0.1145 -0.0003 7 6 5.4470 1.1687 0.6375 8 6 4.5210 2.2200 -0.0012 9 1 4.8311 2.5305 -0.9988 10 6 4.2005 3.3998 0.9187 11 8 3.3965 4.3482 0.2143 12 6 3.0244 5.4562 0.8884 13 1 3.3348 5.5945 1.9135 14 6 2.2434 6.4172 0.2650 15 7 1.8646 6.2485 -0.9838 16 14 1.7287 7.9515 1.1979 17 1 2.2798 7.9011 2.5759 18 1 2.2500 9.1539 0.4994 19 1 0.2465 8.0191 1.2603 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.9501 -0.8401 -0.0004 24 1 4.8343 -0.1945 -0.9986 25 1 4.3000 -0.7273 0.6549 26 1 6.4584 1.1702 0.2310 27 1 5.4271 1.1702 1.7273 28 1 3.6574 3.0416 1.7934 29 1 5.1284 3.8751 1.2367 30 1 1.3185 6.9211 -1.4200 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260103199.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:52 Heat of formation + Delta-G solvation = -49.046828 kcal Electronic energy + Delta-G solvation = -14690.102428 eV Core-core repulsion = 12100.685005 eV Total energy + Delta-G solvation = -2589.417423 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.31275 -39.10149 -37.79093 -35.41699 -33.86576 -31.07175 -29.49306 -27.03441 -26.50192 -23.88161 -22.79155 -20.60481 -19.69166 -18.73177 -17.56675 -17.30211 -16.60640 -15.85822 -15.76873 -15.60585 -15.31927 -14.39350 -14.09280 -13.93611 -13.48580 -13.16035 -13.02819 -12.97700 -12.83081 -12.28755 -12.15220 -11.69777 -11.51195 -11.22159 -10.95595 -10.15556 -10.09421 -9.42536 -8.12167 -5.80459 1.33305 1.42077 1.51776 1.60610 2.31908 2.35881 3.08252 3.19709 3.47177 3.84125 4.12160 4.29569 4.36610 4.46597 4.50752 4.62352 4.64658 4.78591 4.80914 4.92799 4.99473 5.09887 5.20829 5.38676 5.60429 6.23352 6.32905 7.25522 7.29099 7.80166 8.15098 9.13663 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.032428 B = 0.009284 C = 0.007668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.234812 B = 3015.175800 C = 3650.754228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.737 5.737 3 C 0.693 3.307 4 O -0.617 6.617 5 N -0.670 5.670 6 C 0.110 3.890 7 C -0.117 4.117 8 C 0.145 3.855 9 H 0.080 0.920 10 C 0.068 3.932 11 O -0.320 6.320 12 C -0.372 4.372 13 H 0.065 0.935 14 C -0.049 4.049 15 N -0.938 5.938 16 Si 1.006 2.994 17 H -0.256 1.256 18 H -0.268 1.268 19 H -0.281 1.281 20 H 0.035 0.965 21 H 0.033 0.967 22 H 0.124 0.876 23 H 0.412 0.588 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.123 0.877 27 H 0.098 0.902 28 H 0.007 0.993 29 H 0.046 0.954 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.198 -17.413 3.718 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.395 5.395 3 C 0.396 3.604 4 O -0.496 6.496 5 N -0.411 5.411 6 C -0.011 4.011 7 C -0.154 4.154 8 C 0.041 3.959 9 H 0.098 0.902 10 C -0.010 4.010 11 O -0.235 6.235 12 C -0.451 4.451 13 H 0.082 0.918 14 C -0.241 4.241 15 N -0.583 5.583 16 Si 0.828 3.172 17 H -0.180 1.180 18 H -0.193 1.193 19 H -0.207 1.207 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.143 0.857 23 H 0.248 0.752 24 H 0.123 0.877 25 H 0.128 0.872 26 H 0.141 0.859 27 H 0.116 0.884 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.377 -16.627 3.424 17.807 hybrid contribution -0.427 0.677 0.319 0.862 sum 4.949 -15.949 3.743 17.114 Atomic orbital electron populations 1.21439 0.77846 1.03887 1.00329 1.44710 1.07672 1.06324 1.80779 1.16189 0.81445 0.84518 0.78296 1.91158 1.67825 1.32578 1.57991 1.49580 1.01760 1.11947 1.77781 1.23442 0.82939 0.92327 1.02372 1.23507 0.98796 0.91379 1.01760 1.22910 0.85187 0.88946 0.98891 0.90233 1.22504 0.93621 0.90681 0.94166 1.85680 1.68862 1.30292 1.38687 1.21307 1.30950 0.96764 0.96055 0.91759 1.26278 0.97828 1.02663 0.97331 1.70275 1.38762 1.36027 1.13262 0.84701 0.77768 0.76675 0.78027 1.17978 1.19342 1.20718 0.94629 0.94825 0.85740 0.75248 0.87749 0.87224 0.85889 0.88360 0.97495 0.93573 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.95 10.70 127.77 1.37 4.32 16 2 N -0.74 -21.84 5.72 -500.20 -2.86 -24.70 16 3 C 0.69 29.91 8.66 179.05 1.55 31.46 16 4 O -0.62 -36.96 15.73 4.08 0.06 -36.90 16 5 N -0.67 -23.74 3.50 -828.56 -2.90 -26.64 16 6 C 0.11 2.04 8.45 86.44 0.73 2.77 16 7 C -0.12 -2.41 7.86 31.26 0.25 -2.16 16 8 C 0.14 5.42 4.53 45.10 0.20 5.63 16 9 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 10 C 0.07 3.35 5.48 71.98 0.39 3.74 16 11 O -0.32 -21.10 8.91 -73.92 -0.66 -21.76 16 12 C -0.37 -24.81 9.89 67.91 0.67 -24.13 16 13 H 0.06 4.01 7.77 -2.91 -0.02 3.99 16 14 C -0.05 -3.22 5.49 84.82 0.47 -2.75 16 15 N -0.94 -66.82 13.67 21.61 0.30 -66.52 16 16 Si 1.01 50.20 29.55 68.60 2.03 52.23 16 17 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 20 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.41 8.09 8.45 -92.70 -0.78 7.31 16 24 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.10 1.94 8.10 -2.39 -0.02 1.92 16 28 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.26 16.87 8.31 -92.71 -0.77 16.10 16 Total: -1.00 -100.13 265.38 1.95 -98.18 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.35 Total: 7.24 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 5.63 Total: 18.88 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -5.46 Total: -117.87 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -0.59 Total: -58.66 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.03 Total: 52.23 kcal Total: -100.13 1.95 -98.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103199.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.130 kcal (2) G-P(sol) polarization free energy of solvation -100.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds