Wall clock time and date at job start Mon Mar 30 2020 02:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 119.99903 * 2 1 4 4 O 1.21579 * 119.99738 * 0.02562 * 3 2 1 5 5 N 1.34770 * 119.99906 * 179.97438 * 3 2 1 6 6 C 1.47070 * 136.06083 * 359.95681 * 5 3 2 7 7 C 1.53493 * 87.98728 * 152.90935 * 6 5 3 8 8 C 1.47067 * 136.05753 * 180.02562 * 5 3 2 9 9 H 1.08998 * 113.47240 * 92.24988 * 8 5 3 10 10 C 1.52999 * 113.46877 * 321.86385 * 8 5 3 11 11 O 1.42901 * 109.46672 * 84.50526 * 10 8 5 12 12 C 1.34934 * 116.99894 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.38637 * 119.99727 * 179.97438 * 12 11 10 15 15 N 1.31581 * 120.00374 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99524 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47488 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46997 * 120.00520 * 16 14 12 19 19 H 1.48505 * 109.47163 * 239.99771 * 16 14 12 20 20 H 1.09002 * 109.47116 * 299.99504 * 1 2 3 21 21 H 1.08997 * 109.47349 * 59.99984 * 1 2 3 22 22 H 1.09001 * 109.47007 * 179.97438 * 1 2 3 23 23 H 0.97003 * 120.00224 * 180.02562 * 2 1 3 24 24 H 1.08996 * 113.46849 * 267.69390 * 6 5 3 25 25 H 1.08998 * 113.46552 * 38.13040 * 6 5 3 26 26 H 1.08995 * 114.20848 * 272.48106 * 7 6 5 27 27 H 1.09006 * 114.20583 * 139.65458 * 7 6 5 28 28 H 1.09006 * 109.47304 * 324.50976 * 10 8 5 29 29 H 1.08999 * 109.47592 * 204.50565 * 10 8 5 30 30 H 0.96996 * 119.99866 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2201 0.0005 5 7 3.4865 1.1672 0.0005 6 6 4.5456 0.1467 0.0019 7 6 5.4547 1.1669 -0.6973 8 6 4.5455 2.1878 0.0012 9 1 4.8849 2.4606 1.0004 10 6 4.2185 3.4056 -0.8654 11 8 3.4284 4.3278 -0.1121 12 6 3.0517 5.4636 -0.7356 13 1 3.3480 5.6417 -1.7587 14 6 2.2835 6.4015 -0.0630 15 7 1.9221 6.1842 1.1834 16 14 1.7627 7.9742 -0.9260 17 1 2.2946 7.9776 -2.3124 18 1 0.2801 8.0498 -0.9649 19 1 2.2987 9.1453 -0.1867 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.9500 -0.8401 -0.0004 24 1 4.8857 -0.1245 1.0013 25 1 4.3126 -0.7214 -0.6147 26 1 5.3740 1.1662 -1.7842 27 1 6.4843 1.1671 -0.3394 28 1 3.6623 3.0858 -1.7466 29 1 5.1444 3.8897 -1.1760 30 1 1.3849 6.8406 1.6540 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260103201.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:55 Heat of formation + Delta-G solvation = -10.360471 kcal Electronic energy + Delta-G solvation = -14699.506996 eV Core-core repulsion = 12111.767139 eV Total energy + Delta-G solvation = -2587.739857 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.04456 -37.69513 -35.64075 -33.90809 -31.48098 -29.70793 -27.83335 -25.85947 -24.18406 -22.27416 -21.57808 -19.24145 -17.74053 -17.01515 -15.79612 -15.66901 -14.81754 -14.32270 -14.19943 -13.84421 -13.64831 -12.69079 -12.58523 -12.36098 -12.04456 -11.92545 -11.52949 -11.21548 -11.05428 -10.79750 -10.34745 -9.86620 -9.40992 -9.23585 -8.93668 -8.67578 -8.08538 -7.70051 -5.69110 -3.30811 2.93961 3.43884 3.46656 3.51275 3.89670 4.28454 4.46414 4.60221 5.18262 5.23371 5.36926 5.46890 5.60831 5.65946 5.81057 5.82128 5.87621 6.02291 6.07879 6.24730 6.61128 6.80295 6.86172 6.88513 7.59771 7.67541 8.62275 8.66176 9.30171 9.73092 10.44264 11.52128 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.032212 B = 0.009349 C = 0.007701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.036535 B = 2994.329949 C = 3635.097227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.758 5.758 3 C 0.714 3.286 4 O -0.528 6.528 5 N -0.660 5.660 6 C 0.100 3.900 7 C -0.149 4.149 8 C 0.163 3.837 9 H 0.093 0.907 10 C 0.072 3.928 11 O -0.276 6.276 12 C -0.350 4.350 13 H 0.057 0.943 14 C 0.023 3.977 15 N -0.883 5.883 16 Si 0.920 3.080 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.285 1.285 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.067 0.933 23 H 0.388 0.612 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.025 0.975 29 H 0.029 0.971 30 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.700 -15.473 -3.093 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.416 5.416 3 C 0.416 3.584 4 O -0.399 6.399 5 N -0.402 5.402 6 C -0.024 4.024 7 C -0.187 4.187 8 C 0.059 3.941 9 H 0.110 0.890 10 C -0.007 4.007 11 O -0.190 6.190 12 C -0.430 4.430 13 H 0.075 0.925 14 C -0.175 4.175 15 N -0.527 5.527 16 Si 0.748 3.252 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.211 1.211 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.086 0.914 23 H 0.220 0.780 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.783 -14.583 -2.776 15.319 hybrid contribution -0.069 0.288 -0.606 0.674 sum 3.714 -14.295 -3.381 15.152 Atomic orbital electron populations 1.21287 0.78679 1.00952 1.02361 1.44919 1.07121 1.06971 1.82572 1.15464 0.79847 0.84295 0.78746 1.91218 1.65377 1.29224 1.54073 1.48839 1.01981 1.10436 1.78958 1.22800 0.86481 0.93209 0.99934 1.23458 0.98207 0.96054 1.01012 1.22528 0.82538 0.89394 0.99616 0.88966 1.22222 0.94579 0.90257 0.93629 1.85737 1.68123 1.28752 1.36421 1.20758 1.31241 0.94755 0.96220 0.92542 1.24882 0.98176 0.98420 0.96028 1.70062 1.38265 1.34608 1.09755 0.85977 0.78364 0.82306 0.78575 1.20135 1.21104 1.21108 0.92522 0.92659 0.91405 0.78043 0.90461 0.91347 0.88904 0.89353 0.95745 0.95316 0.93728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.53 10.70 59.85 0.64 2.17 16 2 N -0.76 -11.66 5.72 -72.07 -0.41 -12.07 16 3 C 0.71 15.13 8.70 -86.92 -0.76 14.38 16 4 O -0.53 -14.87 15.76 -3.11 -0.05 -14.92 16 5 N -0.66 -12.04 3.57 -183.21 -0.65 -12.69 16 6 C 0.10 1.16 8.28 -8.51 -0.07 1.09 16 7 C -0.15 -1.81 8.03 -26.21 -0.21 -2.02 16 8 C 0.16 3.06 4.33 -72.39 -0.31 2.74 16 9 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 10 C 0.07 1.71 5.47 37.16 0.20 1.92 16 11 O -0.28 -8.66 8.91 -24.93 -0.22 -8.88 16 12 C -0.35 -11.29 9.89 30.88 0.31 -10.98 16 13 H 0.06 1.72 7.77 -52.49 -0.41 1.31 16 14 C 0.02 0.73 5.49 -17.51 -0.10 0.63 16 15 N -0.88 -30.22 13.68 55.48 0.76 -29.46 16 16 Si 0.92 23.95 29.55 -169.99 -5.02 18.93 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -7.35 7.11 56.52 0.40 -6.94 16 19 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 20 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.39 4.45 8.55 -40.82 -0.35 4.10 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 1.10 8.12 -51.93 -0.42 0.67 16 27 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.25 8.04 8.31 -40.82 -0.34 7.70 16 LS Contribution 265.41 15.07 4.00 4.00 Total: -1.00 -41.83 265.41 -6.02 -47.85 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -4.12 Total: -2.68 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -0.30 Total: 9.93 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.31 Total: -54.23 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.27 Total: -23.80 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.02 Total: 18.93 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -41.83 -6.02 -47.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103201.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.488 kcal (2) G-P(sol) polarization free energy of solvation -41.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds