Wall clock time and date at job start Mon Mar 30 2020 02:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 119.99903 * 2 1 4 4 O 1.21579 * 119.99738 * 0.02562 * 3 2 1 5 5 N 1.34770 * 119.99906 * 179.97438 * 3 2 1 6 6 C 1.47070 * 136.06083 * 359.95681 * 5 3 2 7 7 C 1.53493 * 87.98728 * 152.90935 * 6 5 3 8 8 C 1.47067 * 136.05753 * 180.02562 * 5 3 2 9 9 H 1.08998 * 113.47240 * 92.24988 * 8 5 3 10 10 C 1.52999 * 113.46877 * 321.86385 * 8 5 3 11 11 O 1.42901 * 109.46672 * 84.50526 * 10 8 5 12 12 C 1.34934 * 116.99894 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99963 * 0.02562 * 12 11 10 14 14 C 1.38637 * 119.99727 * 179.97438 * 12 11 10 15 15 N 1.31581 * 120.00374 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99524 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47488 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46997 * 120.00520 * 16 14 12 19 19 H 1.48505 * 109.47163 * 239.99771 * 16 14 12 20 20 H 1.09002 * 109.47116 * 299.99504 * 1 2 3 21 21 H 1.08997 * 109.47349 * 59.99984 * 1 2 3 22 22 H 1.09001 * 109.47007 * 179.97438 * 1 2 3 23 23 H 0.97003 * 120.00224 * 180.02562 * 2 1 3 24 24 H 1.08996 * 113.46849 * 267.69390 * 6 5 3 25 25 H 1.08998 * 113.46552 * 38.13040 * 6 5 3 26 26 H 1.08995 * 114.20848 * 272.48106 * 7 6 5 27 27 H 1.09006 * 114.20583 * 139.65458 * 7 6 5 28 28 H 1.09006 * 109.47304 * 324.50976 * 10 8 5 29 29 H 1.08999 * 109.47592 * 204.50565 * 10 8 5 30 30 H 0.96996 * 119.99866 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2201 0.0005 5 7 3.4865 1.1672 0.0005 6 6 4.5456 0.1467 0.0019 7 6 5.4547 1.1669 -0.6973 8 6 4.5455 2.1878 0.0012 9 1 4.8849 2.4606 1.0004 10 6 4.2185 3.4056 -0.8654 11 8 3.4284 4.3278 -0.1121 12 6 3.0517 5.4636 -0.7356 13 1 3.3480 5.6417 -1.7587 14 6 2.2835 6.4015 -0.0630 15 7 1.9221 6.1842 1.1834 16 14 1.7627 7.9742 -0.9260 17 1 2.2946 7.9776 -2.3124 18 1 0.2801 8.0498 -0.9649 19 1 2.2987 9.1453 -0.1867 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.9500 -0.8401 -0.0004 24 1 4.8857 -0.1245 1.0013 25 1 4.3126 -0.7214 -0.6147 26 1 5.3740 1.1662 -1.7842 27 1 6.4843 1.1671 -0.3394 28 1 3.6623 3.0858 -1.7466 29 1 5.1444 3.8897 -1.1760 30 1 1.3849 6.8406 1.6540 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260103201.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:55 Heat of formation + Delta-G solvation = -45.189899 kcal Electronic energy + Delta-G solvation = -14701.017313 eV Core-core repulsion = 12111.767139 eV Total energy + Delta-G solvation = -2589.250174 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.43747 -39.21088 -37.81427 -35.42375 -33.86543 -31.12931 -29.46127 -27.06878 -26.48277 -23.74930 -22.93038 -20.65900 -19.69613 -18.74801 -17.55270 -17.30031 -16.59489 -15.86086 -15.78014 -15.61917 -15.33078 -14.36199 -14.08704 -13.97581 -13.50170 -13.28458 -13.02766 -12.95306 -12.82736 -12.33307 -12.13474 -11.59416 -11.45701 -11.20902 -11.00930 -10.16718 -10.09291 -9.43902 -8.12317 -5.80376 1.33094 1.41842 1.51546 1.60471 2.31158 2.35229 3.11495 3.19826 3.42699 3.84737 4.10415 4.29081 4.36102 4.46860 4.51206 4.62368 4.65050 4.78587 4.81567 4.92697 4.99774 5.08543 5.20730 5.38475 5.59302 6.23344 6.33948 7.26576 7.29117 7.78883 8.15042 9.13547 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.032212 B = 0.009349 C = 0.007701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.036535 B = 2994.329949 C = 3635.097227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.736 5.736 3 C 0.701 3.299 4 O -0.616 6.616 5 N -0.672 5.672 6 C 0.108 3.892 7 C -0.117 4.117 8 C 0.142 3.858 9 H 0.081 0.919 10 C 0.066 3.934 11 O -0.320 6.320 12 C -0.371 4.371 13 H 0.064 0.936 14 C -0.049 4.049 15 N -0.938 5.938 16 Si 1.006 2.994 17 H -0.256 1.256 18 H -0.281 1.281 19 H -0.268 1.268 20 H 0.033 0.967 21 H 0.036 0.964 22 H 0.125 0.875 23 H 0.412 0.588 24 H 0.103 0.897 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.128 0.872 28 H 0.006 0.994 29 H 0.045 0.955 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.047 -17.230 -4.158 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.394 5.394 3 C 0.403 3.597 4 O -0.494 6.494 5 N -0.413 5.413 6 C -0.013 4.013 7 C -0.155 4.155 8 C 0.038 3.962 9 H 0.099 0.901 10 C -0.012 4.012 11 O -0.235 6.235 12 C -0.450 4.450 13 H 0.082 0.918 14 C -0.241 4.241 15 N -0.583 5.583 16 Si 0.828 3.172 17 H -0.180 1.180 18 H -0.207 1.207 19 H -0.193 1.193 20 H 0.052 0.948 21 H 0.055 0.945 22 H 0.143 0.857 23 H 0.248 0.752 24 H 0.121 0.879 25 H 0.124 0.876 26 H 0.117 0.883 27 H 0.146 0.854 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.203 -16.454 -3.859 17.683 hybrid contribution -0.415 0.704 -0.285 0.866 sum 4.787 -15.750 -4.143 16.975 Atomic orbital electron populations 1.21450 0.77715 1.03940 1.00380 1.44693 1.07697 1.06253 1.80765 1.15966 0.80878 0.84542 0.78293 1.91154 1.67635 1.32600 1.58015 1.49045 1.01762 1.12774 1.77709 1.23158 0.83134 0.92960 1.02066 1.23441 0.99176 0.91891 1.01010 1.22839 0.85125 0.89009 0.99254 0.90114 1.22566 0.93672 0.91081 0.93874 1.85675 1.69576 1.29499 1.38776 1.21303 1.31494 0.95548 0.96669 0.91832 1.26268 0.97900 1.02945 0.96969 1.70269 1.39458 1.36566 1.12043 0.84705 0.77760 0.76594 0.78142 1.18009 1.20716 1.19328 0.94816 0.94522 0.85701 0.75232 0.87930 0.87607 0.88257 0.85364 0.97604 0.93718 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.94 10.70 127.77 1.37 4.31 16 2 N -0.74 -21.84 5.72 -500.21 -2.86 -24.70 16 3 C 0.70 30.30 8.70 179.06 1.56 31.86 16 4 O -0.62 -36.87 15.76 4.07 0.06 -36.80 16 5 N -0.67 -24.00 3.57 -851.81 -3.04 -27.04 16 6 C 0.11 2.06 8.28 83.17 0.69 2.74 16 7 C -0.12 -2.41 8.03 30.93 0.25 -2.16 16 8 C 0.14 5.29 4.33 41.79 0.18 5.47 16 9 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 10 C 0.07 3.24 5.47 71.98 0.39 3.64 16 11 O -0.32 -21.11 8.91 -74.00 -0.66 -21.77 16 12 C -0.37 -24.81 9.89 67.92 0.67 -24.13 16 13 H 0.06 3.98 7.77 -2.91 -0.02 3.96 16 14 C -0.05 -3.21 5.49 84.83 0.47 -2.75 16 15 N -0.94 -66.82 13.68 21.61 0.30 -66.52 16 16 Si 1.01 50.28 29.55 68.60 2.03 52.31 16 17 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 20 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 21 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.41 8.14 8.55 -92.71 -0.79 7.35 16 24 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.10 1.97 8.12 -2.39 -0.02 1.95 16 27 H 0.13 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 29 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.26 16.87 8.31 -92.71 -0.77 16.10 16 Total: -1.00 -100.11 265.41 1.75 -98.37 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 0.34 Total: 7.17 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: 5.57 Total: 18.98 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -5.60 Total: -118.25 kcal Atomic # 8 Polarization: -57.98 SS G_CDS: -0.59 Total: -58.57 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.03 Total: 52.31 kcal Total: -100.11 1.75 -98.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103201.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.176 kcal (2) G-P(sol) polarization free energy of solvation -100.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds