Wall clock time and date at job start Mon Mar 30 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47353 * 2 1 4 4 S 1.81406 * 109.46931 * 239.99877 * 2 1 3 5 5 C 1.81395 * 103.00025 * 287.16700 * 4 2 1 6 6 C 1.50704 * 110.02002 * 305.86464 * 5 4 2 7 7 H 1.07996 * 119.99541 * 120.01944 * 6 5 4 8 8 C 1.37877 * 119.99963 * 300.02546 * 6 5 4 9 9 N 1.31518 * 119.99621 * 6.58558 * 8 6 5 10 10 Si 1.86795 * 119.99899 * 186.58970 * 8 6 5 11 11 H 1.48496 * 109.47091 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46888 * 120.00109 * 10 8 6 13 13 H 1.48507 * 109.47131 * 239.99696 * 10 8 6 14 14 C 1.54262 * 110.03113 * 184.47027 * 5 4 2 15 15 C 1.54963 * 104.16189 * 217.13675 * 14 5 4 16 16 C 1.54894 * 102.77766 * 37.89116 * 15 14 5 17 17 C 1.53876 * 110.02930 * 67.25706 * 5 4 2 18 18 H 1.09002 * 109.46746 * 188.02722 * 1 2 3 19 19 H 1.08996 * 109.47225 * 68.02341 * 1 2 3 20 20 H 1.08998 * 109.46969 * 308.02350 * 1 2 3 21 21 H 1.08994 * 109.47581 * 120.00109 * 2 1 3 22 22 H 1.08994 * 109.47329 * 59.99578 * 3 2 1 23 23 H 1.09000 * 109.47599 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.47179 * 300.00109 * 3 2 1 25 25 H 0.97003 * 119.99589 * 184.99965 * 9 8 6 26 26 H 1.08995 * 110.49172 * 335.78645 * 14 5 4 27 27 H 1.09010 * 110.48417 * 98.43261 * 14 5 4 28 28 H 1.09003 * 110.72392 * 279.57865 * 15 14 5 29 29 H 1.09004 * 110.92431 * 156.29777 * 15 14 5 30 30 H 1.08994 * 110.48967 * 203.40691 * 16 15 14 31 31 H 1.09001 * 110.48505 * 80.75544 * 16 15 14 32 32 H 1.09001 * 110.02897 * 238.56805 * 17 5 4 33 33 H 1.08995 * 110.03366 * 359.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8552 -1.4812 5 6 1.7788 -2.5970 -1.1205 6 6 2.3899 -2.9855 0.2011 7 1 1.7604 -3.3412 1.0033 8 6 3.7526 -2.8867 0.3861 9 7 4.5036 -2.3335 -0.5411 10 14 4.5321 -3.5388 1.9534 11 1 3.4782 -4.1101 2.8297 12 1 5.5186 -4.5953 1.6131 13 1 5.2193 -2.4299 2.6630 14 6 2.3366 -3.4940 -2.2448 15 6 1.2784 -4.6161 -2.3947 16 6 -0.0566 -3.8574 -2.1914 17 6 0.2578 -2.8280 -1.0862 18 1 -0.3633 -1.0176 0.1435 19 1 -0.3633 0.3846 -0.9529 20 1 -0.3633 0.6330 0.8095 21 1 1.8934 -0.5138 0.8899 22 1 1.6767 1.9563 0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9564 -0.8900 25 1 5.4688 -2.3289 -0.4444 26 1 2.4283 -2.9299 -3.1729 27 1 3.3002 -3.9135 -1.9554 28 1 1.4113 -5.3769 -1.6255 29 1 1.3218 -5.0619 -3.3885 30 1 -0.8386 -4.5422 -1.8635 31 1 -0.3519 -3.3517 -3.1108 32 1 -0.0381 -3.2219 -0.1139 33 1 -0.2664 -1.8935 -1.2858 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260119562.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:42 Heat of formation + Delta-G solvation = -23.591461 kcal Electronic energy + Delta-G solvation = -13309.444436 eV Core-core repulsion = 11267.424055 eV Total energy + Delta-G solvation = -2042.020381 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.06006 -33.82315 -32.55446 -28.41361 -27.62941 -26.30183 -24.12059 -20.92108 -19.75443 -18.82347 -16.54753 -15.22041 -14.79093 -14.65310 -14.01351 -13.30072 -12.81270 -12.50116 -12.34011 -11.86861 -11.61287 -11.50675 -11.08980 -10.70583 -10.65665 -10.49760 -10.40827 -10.01519 -9.96890 -9.82078 -9.46185 -9.32618 -9.11211 -8.51333 -7.98810 -6.34965 -5.44463 -4.11653 3.23370 3.34504 3.36915 3.44749 4.34714 4.37339 5.36414 5.69381 5.72854 5.75937 5.81365 5.87393 6.14681 6.19921 6.38808 6.43494 6.46018 6.47597 6.58509 6.68493 6.71871 6.86050 6.90192 6.96120 7.02828 7.07428 7.21290 7.30378 7.66964 7.81996 8.26273 8.80817 9.47983 10.97204 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.021403 B = 0.017903 C = 0.012017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.906244 B = 1563.577906 C = 2329.377098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.047 4.047 3 C -0.124 4.124 4 S -0.311 6.311 5 C 0.130 3.870 6 C -0.510 4.510 7 H 0.058 0.942 8 C 0.073 3.927 9 N -0.823 5.823 10 Si 0.879 3.121 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.284 1.284 14 C -0.077 4.077 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.119 4.119 18 H 0.065 0.935 19 H 0.052 0.948 20 H 0.040 0.960 21 H 0.087 0.913 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.258 0.742 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.588 0.903 -0.479 5.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C -0.183 4.183 4 S -0.076 6.076 5 C 0.023 3.977 6 C -0.551 4.551 7 H 0.076 0.924 8 C -0.136 4.136 9 N -0.457 5.457 10 Si 0.706 3.294 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.210 1.210 14 C -0.117 4.117 15 C -0.157 4.157 16 C -0.158 4.158 17 C -0.159 4.159 18 H 0.084 0.916 19 H 0.071 0.929 20 H 0.059 0.941 21 H 0.105 0.895 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.905 1.551 -1.454 5.345 hybrid contribution 0.093 -0.894 2.019 2.210 sum -4.812 0.656 0.565 4.889 Atomic orbital electron populations 1.22316 0.95768 1.01969 1.00464 1.22573 0.96258 0.97392 1.01402 1.21567 1.01501 0.94897 1.00291 1.85968 1.84773 1.11493 1.25414 1.20683 0.91453 0.88482 0.97131 1.21206 0.92328 1.44470 0.97139 0.92387 1.24970 0.97628 0.94521 0.96483 1.70274 1.04499 1.37458 1.33481 0.86739 0.79608 0.78879 0.84136 1.19780 1.20866 1.21022 1.22043 0.98644 0.94621 0.96428 1.22473 0.95684 0.98262 0.99318 1.22299 0.97012 0.97747 0.98697 1.22889 0.97645 0.97954 0.97422 0.91608 0.92875 0.94069 0.89469 0.93346 0.92271 0.93201 0.93161 0.94351 0.90466 0.92001 0.93505 0.93381 0.92816 0.92767 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 7.99 37.16 0.30 -2.34 16 2 C -0.05 -0.99 3.12 -26.73 -0.08 -1.08 16 3 C -0.12 -2.29 9.19 37.16 0.34 -1.95 16 4 S -0.31 -7.48 18.27 -107.50 -1.96 -9.45 16 5 C 0.13 3.08 0.51 -90.65 -0.05 3.04 16 6 C -0.51 -13.19 6.80 -34.44 -0.23 -13.42 16 7 H 0.06 1.52 7.34 -52.49 -0.39 1.14 16 8 C 0.07 1.92 4.83 -17.82 -0.09 1.84 16 9 N -0.82 -22.43 10.88 55.43 0.60 -21.82 16 10 Si 0.88 20.48 29.55 -169.99 -5.02 15.46 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C -0.08 -1.79 5.51 -25.03 -0.14 -1.93 16 15 C -0.12 -2.31 6.91 -24.70 -0.17 -2.48 16 16 C -0.12 -2.19 6.83 -25.07 -0.17 -2.36 16 17 C -0.12 -2.47 4.62 -25.61 -0.12 -2.59 16 18 H 0.07 1.22 5.31 -51.93 -0.28 0.95 16 19 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 20 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 21 H 0.09 2.05 7.22 -51.93 -0.37 1.68 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 26 H 0.04 0.90 7.81 -51.93 -0.41 0.50 16 27 H 0.08 1.98 6.64 -51.92 -0.34 1.64 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 1.13 7.35 -51.93 -0.38 0.75 16 33 H 0.06 1.26 5.11 -51.93 -0.27 0.99 16 LS Contribution 264.67 15.07 3.99 3.99 Total: -1.00 -26.94 264.67 -8.18 -35.12 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.37 Total: -0.02 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -0.41 Total: -23.28 kcal Atomic # 7 Polarization: -22.43 SS G_CDS: 0.60 Total: -21.82 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: -7.48 SS G_CDS: -1.96 Total: -9.45 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -26.94 -8.18 -35.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260119562.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.528 kcal (2) G-P(sol) polarization free energy of solvation -26.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds